data_RV3 # _chem_comp.id RV3 _chem_comp.name "3-{[(1H-benzimidazole-5-carbonyl)amino]methyl}-1H-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H14 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-23 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.329 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RV3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SSQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RV3 C18 C1 C 0 1 Y N N -47.674 -28.997 5.031 -2.323 0.356 0.925 C18 RV3 1 RV3 C17 C2 C 0 1 Y N N -48.362 -29.042 3.822 -2.421 -0.010 -0.424 C17 RV3 2 RV3 C15 C3 C 0 1 N N N -47.660 -29.090 2.493 -1.196 -0.281 -1.204 C15 RV3 3 RV3 C13 C4 C 0 1 N N N -45.574 -29.988 1.382 1.228 -0.446 -1.390 C13 RV3 4 RV3 C12 C5 C 0 1 Y N N -44.483 -28.978 1.130 2.436 -0.260 -0.509 C12 RV3 5 RV3 C11 C6 C 0 1 Y N N -44.664 -27.757 0.478 3.153 0.945 -0.318 C11 RV3 6 RV3 C10 C7 C 0 1 Y N N -45.784 -27.119 -0.069 3.007 2.242 -0.827 C10 RV3 7 RV3 C20 C8 C 0 1 Y N N -49.780 -29.201 6.196 -4.702 0.510 1.064 C20 RV3 8 RV3 C19 C9 C 0 1 Y N N -48.382 -29.053 6.226 -3.447 0.609 1.656 C19 RV3 9 RV3 C02 C10 C 0 1 N N N -42.449 -30.223 2.165 2.594 -2.619 0.348 C02 RV3 10 RV3 C04 C11 C 0 1 Y N N -43.137 -29.077 1.445 3.029 -1.219 0.251 C04 RV3 11 RV3 C06 C12 C 0 1 Y N N -43.419 -27.170 0.444 4.200 0.663 0.582 C06 RV3 12 RV3 C07 C13 C 0 1 Y N N -43.269 -25.916 -0.146 5.076 1.679 0.952 C07 RV3 13 RV3 C08 C14 C 0 1 Y N N -44.372 -25.283 -0.691 4.912 2.946 0.438 C08 RV3 14 RV3 C09 C15 C 0 1 Y N N -45.627 -25.874 -0.653 3.879 3.222 -0.448 C09 RV3 15 RV3 C22 C16 C 0 1 Y N N -51.883 -29.433 6.551 -6.828 0.456 0.474 C22 RV3 16 RV3 C24 C17 C 0 1 Y N N -50.432 -29.284 4.988 -4.818 0.139 -0.288 C24 RV3 17 RV3 C25 C18 C 0 1 Y N N -49.723 -29.218 3.796 -3.668 -0.118 -1.032 C25 RV3 18 RV3 N05 N1 N 0 1 Y N N -42.532 -27.982 1.032 4.106 -0.667 0.918 N05 RV3 19 RV3 N14 N2 N 0 1 N N N -46.369 -29.736 2.559 0.013 -0.176 -0.617 N14 RV3 20 RV3 N21 N3 N 0 1 Y N N -50.714 -29.300 7.153 -5.990 0.697 1.518 N21 RV3 21 RV3 N23 N4 N 0 1 Y N N -51.726 -29.429 5.251 -6.145 0.128 -0.583 N23 RV3 22 RV3 O01 O1 O 0 1 N N N -43.098 -30.948 2.968 3.265 -3.480 1.138 O01 RV3 23 RV3 O03 O2 O 0 1 N N N -41.224 -30.405 1.957 1.629 -3.001 -0.285 O03 RV3 24 RV3 O16 O3 O 0 1 N N N -48.146 -28.785 1.463 -1.278 -0.598 -2.374 O16 RV3 25 RV3 H181 H1 H 0 0 N N N -46.597 -28.919 5.041 -1.352 0.434 1.391 H181 RV3 26 RV3 H131 H2 H 0 0 N N N -46.245 -29.993 0.510 1.283 0.245 -2.232 H131 RV3 27 RV3 H132 H3 H 0 0 N N N -45.106 -30.978 1.490 1.203 -1.470 -1.762 H132 RV3 28 RV3 H101 H4 H 0 0 N N N -46.755 -27.591 -0.036 2.207 2.466 -1.517 H101 RV3 29 RV3 H191 H5 H 0 0 N N N -47.862 -28.983 7.170 -3.363 0.886 2.696 H191 RV3 30 RV3 H071 H6 H 0 0 N N N -42.299 -25.442 -0.177 5.882 1.475 1.642 H071 RV3 31 RV3 H081 H7 H 0 0 N N N -44.254 -24.314 -1.153 5.592 3.733 0.728 H081 RV3 32 RV3 H091 H8 H 0 0 N N N -46.479 -25.364 -1.078 3.764 4.221 -0.842 H091 RV3 33 RV3 H221 H9 H 0 0 N N N -52.831 -29.531 7.058 -7.905 0.521 0.518 H221 RV3 34 RV3 H251 H10 H 0 0 N N N -50.240 -29.305 2.852 -3.743 -0.400 -2.072 H251 RV3 35 RV3 H051 H11 H 0 0 N N N -41.557 -27.787 1.141 4.698 -1.140 1.523 H051 RV3 36 RV3 H141 H12 H 0 0 N N N -46.015 -30.018 3.451 0.079 0.077 0.317 H141 RV3 37 RV3 H211 H13 H 0 0 N N N -50.555 -29.277 8.140 -6.250 0.952 2.417 H211 RV3 38 RV3 H2 H15 H 0 1 N N N -42.519 -31.599 3.346 2.942 -4.391 1.170 H2 RV3 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RV3 C08 C09 DOUB Y N 1 RV3 C08 C07 SING Y N 2 RV3 C09 C10 SING Y N 3 RV3 C07 C06 DOUB Y N 4 RV3 C10 C11 DOUB Y N 5 RV3 C06 C11 SING Y N 6 RV3 C06 N05 SING Y N 7 RV3 C11 C12 SING Y N 8 RV3 N05 C04 SING Y N 9 RV3 C12 C13 SING N N 10 RV3 C12 C04 DOUB Y N 11 RV3 C13 N14 SING N N 12 RV3 C04 C02 SING N N 13 RV3 O16 C15 DOUB N N 14 RV3 O03 C02 DOUB N N 15 RV3 C02 O01 SING N N 16 RV3 C15 N14 SING N N 17 RV3 C15 C17 SING N N 18 RV3 C25 C17 DOUB Y N 19 RV3 C25 C24 SING Y N 20 RV3 C17 C18 SING Y N 21 RV3 C24 N23 SING Y N 22 RV3 C24 C20 DOUB Y N 23 RV3 C18 C19 DOUB Y N 24 RV3 N23 C22 DOUB Y N 25 RV3 C20 C19 SING Y N 26 RV3 C20 N21 SING Y N 27 RV3 C22 N21 SING Y N 28 RV3 C18 H181 SING N N 29 RV3 C13 H131 SING N N 30 RV3 C13 H132 SING N N 31 RV3 C10 H101 SING N N 32 RV3 C19 H191 SING N N 33 RV3 C07 H071 SING N N 34 RV3 C08 H081 SING N N 35 RV3 C09 H091 SING N N 36 RV3 C22 H221 SING N N 37 RV3 C25 H251 SING N N 38 RV3 N05 H051 SING N N 39 RV3 N14 H141 SING N N 40 RV3 N21 H211 SING N N 41 RV3 O01 H2 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RV3 SMILES ACDLabs 12.01 "O=C(O)c1[NH]c2ccccc2c1CNC(=O)c1ccc2[NH]cnc2c1" RV3 InChI InChI 1.06 "InChI=1S/C18H14N4O3/c23-17(10-5-6-14-15(7-10)21-9-20-14)19-8-12-11-3-1-2-4-13(11)22-16(12)18(24)25/h1-7,9,22H,8H2,(H,19,23)(H,20,21)(H,24,25)" RV3 InChIKey InChI 1.06 ZBKHDPZXZUDEDP-UHFFFAOYSA-N RV3 SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1[nH]c2ccccc2c1CNC(=O)c3ccc4[nH]cnc4c3" RV3 SMILES CACTVS 3.385 "OC(=O)c1[nH]c2ccccc2c1CNC(=O)c3ccc4[nH]cnc4c3" RV3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c([nH]2)C(=O)O)CNC(=O)c3ccc4c(c3)nc[nH]4" RV3 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c([nH]2)C(=O)O)CNC(=O)c3ccc4c(c3)nc[nH]4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RV3 "SYSTEMATIC NAME" ACDLabs 12.01 "3-{[(1H-benzimidazole-5-carbonyl)amino]methyl}-1H-indole-2-carboxylic acid" RV3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(1~{H}-benzimidazol-5-ylcarbonylamino)methyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RV3 "Create component" 2022-06-23 RCSB RV3 "Initial release" 2022-07-06 RCSB #