data_RVG # _chem_comp.id RVG _chem_comp.name "6-deoxy-2,3-di-O-methyl-beta-D-glucopyranose" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H16 O5" _chem_comp.mon_nstd_parent_comp_id YYK _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-02-26 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 192.210 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RVG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1SR5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RVG O4 O4 O 0 1 N N N 29.621 4.514 41.063 2.683 -0.674 0.079 O4 RVG 1 RVG C4 C4 C 0 1 N N R 29.733 4.227 42.541 1.460 -0.049 -0.319 C4 RVG 2 RVG C5 C5 C 0 1 N N R 31.093 3.563 43.266 1.386 1.357 0.280 C5 RVG 3 RVG O5 O5 O 0 1 N N N 30.433 3.287 44.576 0.138 1.958 -0.070 O5 RVG 4 RVG C6 C6 C 0 1 N N N 32.082 4.772 43.219 2.534 2.207 -0.269 C6 RVG 5 RVG C3 C3 C 0 1 N N S 28.472 3.274 42.470 0.275 -0.875 0.189 C3 RVG 6 RVG O3 O3 O 0 1 N N N 27.331 3.937 41.851 0.295 -2.167 -0.423 O3 RVG 7 RVG C3O C3O C 0 1 N N N 26.603 3.208 40.532 1.038 -3.144 0.308 C3O RVG 8 RVG C2 C2 C 0 1 N N R 28.156 2.717 44.074 -1.028 -0.156 -0.175 C2 RVG 9 RVG O2 O2 O 0 1 N N N 27.026 1.834 43.923 -2.139 -0.881 0.357 O2 RVG 10 RVG C2O C2O C 0 1 N N N 25.829 1.898 45.031 -3.336 -0.757 -0.413 C2O RVG 11 RVG C1 C1 C 0 1 N N R 29.520 2.008 44.564 -1.006 1.255 0.419 C1 RVG 12 RVG H4 H4 H 0 1 N N N 29.460 5.127 43.112 1.421 0.015 -1.406 H4 RVG 13 RVG H5 H5 H 0 1 N N N 31.454 2.673 42.730 1.467 1.295 1.366 H5 RVG 14 RVG H61 H61 H 0 1 N N N 33.041 4.479 43.671 2.452 2.270 -1.354 H61 RVG 15 RVG H62 H62 H 0 1 N N N 32.245 5.071 42.173 2.481 3.209 0.158 H62 RVG 16 RVG H63 H63 H 0 1 N N N 31.655 5.617 43.780 3.486 1.748 -0.002 H63 RVG 17 RVG H3 H3 H 0 1 N N N 28.748 2.387 41.881 0.343 -0.984 1.271 H3 RVG 18 RVG H22 H22 H 0 1 N N N 25.765 3.830 40.185 0.602 -3.265 1.300 H22 RVG 19 RVG H23 H23 H 0 1 N N N 27.338 3.099 39.721 1.005 -4.096 -0.221 H23 RVG 20 RVG H24 H24 H 0 1 N N N 26.228 2.216 40.823 2.073 -2.817 0.403 H24 RVG 21 RVG H2 H4O H 0 1 N N N 27.932 3.585 44.711 -1.119 -0.094 -1.260 H2 RVG 22 RVG H26 H26 H 0 1 N N N 25.049 1.167 44.772 -3.630 0.292 -0.461 H26 RVG 23 RVG H27 H27 H 0 1 N N N 26.237 1.662 46.025 -3.161 -1.131 -1.421 H27 RVG 24 RVG H28 H28 H 0 1 N N N 25.394 2.908 45.043 -4.132 -1.335 0.057 H28 RVG 25 RVG H1 H1 H 0 1 N N N 29.860 1.084 44.073 -0.956 1.191 1.506 H1 RVG 26 RVG HO4 H6 H 0 1 N Y N 30.312 5.112 40.803 3.477 -0.203 -0.210 HO4 RVG 27 RVG O1 O1 O 0 1 N Y N 29.082 2.083 45.907 -2.193 1.952 0.036 O1 RVG 28 RVG HO1 H1O H 0 1 N Y N 28.495 1.359 46.090 -2.247 2.855 0.377 HO1 RVG 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RVG O4 C4 SING N N 1 RVG C4 C3 SING N N 2 RVG C4 C5 SING N N 3 RVG C5 C6 SING N N 4 RVG C5 O5 SING N N 5 RVG O5 C1 SING N N 6 RVG C3 O3 SING N N 7 RVG C3 C2 SING N N 8 RVG O3 C3O SING N N 9 RVG C2 O2 SING N N 10 RVG C2 C1 SING N N 11 RVG O2 C2O SING N N 12 RVG C4 H4 SING N N 13 RVG C5 H5 SING N N 14 RVG C6 H61 SING N N 15 RVG C6 H62 SING N N 16 RVG C6 H63 SING N N 17 RVG C3 H3 SING N N 18 RVG C3O H22 SING N N 19 RVG C3O H23 SING N N 20 RVG C3O H24 SING N N 21 RVG C2 H2 SING N N 22 RVG C2O H26 SING N N 23 RVG C2O H27 SING N N 24 RVG C2O H28 SING N N 25 RVG C1 H1 SING N N 26 RVG O4 HO4 SING N N 27 RVG C1 O1 SING N N 28 RVG O1 HO1 SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RVG SMILES ACDLabs 12.01 "OC1C(OC)C(OC)C(OC1C)O" RVG InChI InChI 1.03 "InChI=1S/C8H16O5/c1-4-5(9)6(11-2)7(12-3)8(10)13-4/h4-10H,1-3H3/t4-,5-,6+,7-,8-/m1/s1" RVG InChIKey InChI 1.03 SXWBIRCAXZNEGK-JAJWTYFOSA-N RVG SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1[C@H](O)O[C@H](C)[C@@H](O)[C@@H]1OC" RVG SMILES CACTVS 3.385 "CO[CH]1[CH](O)O[CH](C)[CH](O)[CH]1OC" RVG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)OC)OC)O" RVG SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)O)OC)OC)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RVG "SYSTEMATIC NAME" ACDLabs 12.01 "6-deoxy-2,3-di-O-methyl-beta-D-glucopyranose" RVG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{R},6~{R})-3,4-dimethoxy-6-methyl-oxane-2,5-diol" # _pdbx_chem_comp_related.comp_id RVG _pdbx_chem_comp_related.related_comp_id YYK _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 RVG C1 YYK C1 "Carbohydrate core" 2 RVG C2 YYK C2 "Carbohydrate core" 3 RVG C3 YYK C3 "Carbohydrate core" 4 RVG C4 YYK C4 "Carbohydrate core" 5 RVG C5 YYK C5 "Carbohydrate core" 6 RVG C6 YYK C6 "Carbohydrate core" 7 RVG O1 YYK O1 "Carbohydrate core" 8 RVG O2 YYK O2 "Carbohydrate core" 9 RVG O3 YYK O3 "Carbohydrate core" 10 RVG O4 YYK O4 "Carbohydrate core" 11 RVG O5 YYK O5 "Carbohydrate core" 12 RVG H1 YYK H1 "Carbohydrate core" 13 RVG HO1 YYK HO1 "Carbohydrate core" 14 RVG H3 YYK H3 "Carbohydrate core" 15 RVG H4 YYK H4 "Carbohydrate core" 16 RVG H2 YYK H2 "Carbohydrate core" 17 RVG H5 YYK H5 "Carbohydrate core" 18 RVG HO4 YYK HO4 "Carbohydrate core" 19 RVG H61 YYK H61 "Carbohydrate core" 20 RVG H62 YYK H62 "Carbohydrate core" 21 RVG H63 YYK H63 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support RVG "CARBOHYDRATE ISOMER" D PDB ? RVG "CARBOHYDRATE RING" pyranose PDB ? RVG "CARBOHYDRATE ANOMER" beta PDB ? RVG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RVG "Create component" 2020-02-26 RCSB RVG "Other modification" 2020-04-02 RCSB RVG "Modify atom id" 2020-07-17 RCSB RVG "Modify component atom id" 2020-07-17 RCSB RVG "Initial release" 2020-07-29 RCSB ##