data_RVH # _chem_comp.id RVH _chem_comp.name "(2~{R})-~{N}-(1~{H}-benzimidazol-2-yl)-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-06 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 320.345 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RVH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BUA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RVH C1 C1 C 0 1 Y N N -61.539 25.190 -9.888 5.914 2.173 -0.079 C1 RVH 1 RVH C2 C2 C 0 1 Y N N -61.445 25.277 -8.517 4.536 2.117 -0.095 C2 RVH 2 RVH C3 C3 C 0 1 Y N N -62.436 24.651 -7.784 3.895 0.888 -0.106 C3 RVH 3 RVH C4 C4 C 0 1 Y N N -63.483 23.957 -8.389 4.650 -0.297 -0.102 C4 RVH 4 RVH C5 C5 C 0 1 Y N N -63.562 23.877 -9.772 6.045 -0.223 -0.086 C5 RVH 5 RVH C6 C6 C 0 1 Y N N -62.581 24.499 -10.504 6.664 1.007 -0.081 C6 RVH 6 RVH C9 C7 C 0 1 N N R -64.702 23.307 -2.691 -1.059 -1.906 -0.175 C9 RVH 7 RVH C13 C8 C 0 1 N N N -65.375 24.757 -0.842 -2.556 -0.137 0.761 C13 RVH 8 RVH C14 C9 C 0 1 Y N N -62.687 25.031 1.589 -5.437 0.507 -1.364 C14 RVH 9 RVH C10 C10 C 0 1 N N N -63.235 23.776 -0.633 -3.269 -1.008 -1.230 C10 RVH 10 RVH C11 C11 C 0 1 Y N N -63.495 24.710 0.509 -4.272 0.036 -0.804 C11 RVH 11 RVH C12 C12 C 0 1 Y N N -64.744 25.279 0.376 -3.814 0.550 0.411 C12 RVH 12 RVH C15 C13 C 0 1 Y N N -63.173 25.937 2.517 -6.162 1.496 -0.721 C15 RVH 13 RVH C16 C14 C 0 1 Y N N -64.431 26.507 2.375 -5.718 2.013 0.483 C16 RVH 14 RVH C17 C15 C 0 1 Y N N -65.235 26.186 1.300 -4.551 1.548 1.053 C17 RVH 15 RVH C18 C16 C 0 1 N N N -64.323 21.824 -2.624 -1.090 -2.794 1.071 C18 RVH 16 RVH C7 C17 C 0 1 Y N N -63.804 23.825 -6.281 2.546 -0.868 -0.128 C7 RVH 17 RVH C8 C18 C 0 1 N N N -63.988 23.960 -3.861 0.188 -1.059 -0.156 C8 RVH 18 RVH N1 N1 N 0 1 Y N N -64.330 23.431 -7.420 3.770 -1.332 -0.116 N1 RVH 19 RVH N2 N2 N 0 1 Y N N -62.659 24.532 -6.427 2.567 0.497 -0.123 N2 RVH 20 RVH N3 N3 N 0 1 N N N -64.340 23.462 -5.073 1.401 -1.646 -0.145 N3 RVH 21 RVH N4 N4 N 0 1 N N N -64.452 23.957 -1.422 -2.239 -1.038 -0.185 N4 RVH 22 RVH O1 O1 O 0 1 N N N -66.510 24.966 -1.281 -1.899 0.083 1.759 O1 RVH 23 RVH O2 O2 O 0 1 N N N -63.147 24.829 -3.675 0.099 0.150 -0.153 O2 RVH 24 RVH H1 H1 H 0 1 N N N -60.788 25.668 -10.500 6.412 3.131 -0.071 H1 RVH 25 RVH H2 H2 H 0 1 N N N -60.636 25.809 -8.038 3.957 3.029 -0.097 H2 RVH 26 RVH H3 H3 H 0 1 N N N -64.367 23.344 -10.256 6.635 -1.127 -0.083 H3 RVH 27 RVH H4 H4 H 0 1 N N N -62.618 24.452 -11.582 7.743 1.063 -0.068 H4 RVH 28 RVH H7 H5 H 0 1 N N N -65.782 23.357 -2.896 -1.060 -2.531 -1.067 H7 RVH 29 RVH H10 H6 H 0 1 N N N -61.709 24.588 1.703 -5.785 0.105 -2.304 H10 RVH 30 RVH H8 H7 H 0 1 N N N -63.127 22.737 -0.289 -3.752 -1.982 -1.308 H8 RVH 31 RVH H9 H8 H 0 1 N N N -62.339 24.070 -1.199 -2.825 -0.732 -2.187 H9 RVH 32 RVH H11 H9 H 0 1 N N N -62.562 26.205 3.367 -7.076 1.865 -1.162 H11 RVH 33 RVH H12 H10 H 0 1 N N N -64.785 27.210 3.115 -6.288 2.785 0.979 H12 RVH 34 RVH H13 H11 H 0 1 N N N -66.214 26.627 1.183 -4.208 1.954 1.993 H13 RVH 35 RVH H16 H12 H 0 1 N N N -64.840 21.351 -1.776 -0.212 -3.440 1.079 H16 RVH 36 RVH H15 H13 H 0 1 N N N -64.621 21.327 -3.559 -1.089 -2.168 1.963 H15 RVH 37 RVH H14 H14 H 0 1 N N N -63.235 21.729 -2.489 -1.992 -3.406 1.058 H14 RVH 38 RVH H5 H16 H 0 1 N N N -62.086 24.897 -5.694 1.794 1.084 -0.129 H5 RVH 39 RVH H6 H17 H 0 1 N N N -65.057 22.765 -5.086 1.472 -2.613 -0.148 H6 RVH 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RVH C6 C1 DOUB Y N 1 RVH C6 C5 SING Y N 2 RVH C1 C2 SING Y N 3 RVH C5 C4 DOUB Y N 4 RVH C2 C3 DOUB Y N 5 RVH C4 C3 SING Y N 6 RVH C4 N1 SING Y N 7 RVH C3 N2 SING Y N 8 RVH N1 C7 DOUB Y N 9 RVH N2 C7 SING Y N 10 RVH C7 N3 SING N N 11 RVH N3 C8 SING N N 12 RVH C8 O2 DOUB N N 13 RVH C8 C9 SING N N 14 RVH C9 C18 SING N N 15 RVH C9 N4 SING N N 16 RVH N4 C13 SING N N 17 RVH N4 C10 SING N N 18 RVH O1 C13 DOUB N N 19 RVH C13 C12 SING N N 20 RVH C10 C11 SING N N 21 RVH C12 C11 DOUB Y N 22 RVH C12 C17 SING Y N 23 RVH C11 C14 SING Y N 24 RVH C17 C16 DOUB Y N 25 RVH C14 C15 DOUB Y N 26 RVH C16 C15 SING Y N 27 RVH C1 H1 SING N N 28 RVH C2 H2 SING N N 29 RVH C5 H3 SING N N 30 RVH C6 H4 SING N N 31 RVH C9 H7 SING N N 32 RVH C14 H10 SING N N 33 RVH C10 H8 SING N N 34 RVH C10 H9 SING N N 35 RVH C15 H11 SING N N 36 RVH C16 H12 SING N N 37 RVH C17 H13 SING N N 38 RVH C18 H16 SING N N 39 RVH C18 H15 SING N N 40 RVH C18 H14 SING N N 41 RVH N2 H5 SING N N 42 RVH N3 H6 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RVH InChI InChI 1.06 "InChI=1S/C18H16N4O2/c1-11(22-10-12-6-2-3-7-13(12)17(22)24)16(23)21-18-19-14-8-4-5-9-15(14)20-18/h2-9,11H,10H2,1H3,(H2,19,20,21,23)/t11-/m1/s1" RVH InChIKey InChI 1.06 PWSSISUOJZBZFT-LLVKDONJSA-N RVH SMILES_CANONICAL CACTVS 3.385 "C[C@@H](N1Cc2ccccc2C1=O)C(=O)Nc3[nH]c4ccccc4n3" RVH SMILES CACTVS 3.385 "C[CH](N1Cc2ccccc2C1=O)C(=O)Nc3[nH]c4ccccc4n3" RVH SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](C(=O)Nc1[nH]c2ccccc2n1)N3Cc4ccccc4C3=O" RVH SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C(=O)Nc1[nH]c2ccccc2n1)N3Cc4ccccc4C3=O" # _pdbx_chem_comp_identifier.comp_id RVH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(2~{R})-~{N}-(1~{H}-benzimidazol-2-yl)-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RVH "Create component" 2022-12-06 PDBE RVH "Initial release" 2023-09-13 RCSB #