data_RVU # _chem_comp.id RVU _chem_comp.name "~{N}-(1~{H}-benzimidazol-2-yl)-1-(2-methoxy-5-methyl-phenyl)-5-oxidanylidene-pyrrolidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-07 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.398 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RVU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BUE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RVU C8 C1 C 0 1 Y N N -66.351 25.519 0.636 2.993 -1.300 0.144 C8 RVU 1 RVU C9 C2 C 0 1 Y N N -66.329 26.603 1.506 3.956 -2.296 0.167 C9 RVU 2 RVU C1 C3 C 0 1 N N S -64.985 22.844 -2.763 0.465 2.260 -0.798 C1 RVU 3 RVU C2 C4 C 0 1 N N N -64.008 23.137 -3.872 -0.734 1.355 -0.688 C2 RVU 4 RVU C3 C5 C 0 1 Y N N -63.877 23.756 -6.227 -3.017 1.016 -0.164 C3 RVU 5 RVU C4 C6 C 0 1 N N N -65.525 24.053 -2.054 1.701 1.482 -1.301 C4 RVU 6 RVU C5 C7 C 0 1 N N N -64.641 22.628 -0.384 1.995 1.724 0.990 C5 RVU 7 RVU C6 C8 C 0 1 N N N -64.317 21.961 -1.693 0.934 2.729 0.599 C6 RVU 8 RVU C10 C9 C 0 1 Y N N -65.129 27.127 1.929 5.288 -1.974 -0.017 C10 RVU 9 RVU C11 C10 C 0 1 Y N N -63.905 26.599 1.511 5.664 -0.661 -0.225 C11 RVU 10 RVU C12 C11 C 0 1 Y N N -63.931 25.525 0.636 4.710 0.339 -0.250 C12 RVU 11 RVU C13 C12 C 0 1 N N N -62.599 27.193 1.972 7.118 -0.317 -0.426 C13 RVU 12 RVU C14 C13 C 0 1 N N N -68.737 25.532 0.422 1.368 -2.994 0.523 C14 RVU 13 RVU C15 C14 C 0 1 Y N N -62.316 24.373 -7.640 -4.307 -0.781 -0.235 C15 RVU 14 RVU C16 C15 C 0 1 Y N N -63.478 23.991 -8.311 -5.048 0.324 0.217 C16 RVU 15 RVU C17 C16 C 0 1 Y N N -61.184 24.807 -8.301 -4.917 -2.021 -0.356 C17 RVU 16 RVU C18 C17 C 0 1 Y N N -61.249 24.851 -9.674 -6.251 -2.164 -0.037 C18 RVU 17 RVU C19 C18 C 0 1 Y N N -62.400 24.474 -10.362 -6.989 -1.076 0.405 C19 RVU 18 RVU C20 C19 C 0 1 Y N N -63.523 24.042 -9.699 -6.399 0.161 0.536 C20 RVU 19 RVU C7 C20 C 0 1 Y N N -65.131 24.980 0.194 3.372 0.025 -0.066 C7 RVU 20 RVU N1 N1 N 0 1 N N N -64.551 23.457 -5.068 -1.915 1.848 -0.265 N1 RVU 21 RVU N2 N2 N 0 1 N N N -65.108 23.873 -0.681 2.402 1.036 -0.091 N2 RVU 22 RVU N3 N3 N 0 1 Y N N -62.602 24.209 -6.299 -3.024 -0.315 -0.466 N3 RVU 23 RVU N4 N4 N 0 1 Y N N -64.452 23.603 -7.398 -4.205 1.388 0.239 N4 RVU 24 RVU O1 O1 O 0 1 N N N -64.510 22.185 0.744 2.418 1.562 2.116 O1 RVU 25 RVU O2 O2 O 0 1 N N N -67.476 24.922 0.150 1.682 -1.615 0.319 O2 RVU 26 RVU O3 O3 O 0 1 N N N -62.801 23.080 -3.703 -0.637 0.182 -0.981 O3 RVU 27 RVU H91 H1 H 0 1 N N N -67.257 27.035 1.851 3.666 -3.323 0.330 H91 RVU 28 RVU H11 H2 H 0 1 N N N -65.831 22.282 -3.186 0.251 3.112 -1.443 H11 RVU 29 RVU H41 H3 H 0 1 N N N -65.097 24.975 -2.474 1.390 0.623 -1.895 H41 RVU 30 RVU H42 H4 H 0 1 N N N -66.622 24.091 -2.127 2.344 2.136 -1.890 H42 RVU 31 RVU H62 H5 H 0 1 N N N -64.729 20.941 -1.720 1.360 3.730 0.543 H62 RVU 32 RVU H61 H6 H 0 1 N N N -63.229 21.921 -1.848 0.106 2.705 1.308 H61 RVU 33 RVU H101 H7 H 0 0 N N N -65.134 27.971 2.603 6.037 -2.752 0.002 H101 RVU 34 RVU H121 H8 H 0 0 N N N -62.999 25.102 0.290 5.006 1.365 -0.412 H121 RVU 35 RVU H131 H9 H 0 0 N N N -62.289 27.985 1.274 7.359 -0.364 -1.488 H131 RVU 36 RVU H133 H10 H 0 0 N N N -62.725 27.619 2.978 7.308 0.690 -0.054 H133 RVU 37 RVU H132 H11 H 0 0 N N N -61.829 26.408 2.000 7.738 -1.029 0.119 H132 RVU 38 RVU H141 H12 H 0 0 N N N -69.540 24.934 -0.034 0.291 -3.106 0.649 H141 RVU 39 RVU H142 H13 H 0 0 N N N -68.892 25.584 1.510 1.695 -3.573 -0.340 H142 RVU 40 RVU H143 H14 H 0 0 N N N -68.751 26.548 0.000 1.878 -3.354 1.417 H143 RVU 41 RVU H171 H15 H 0 0 N N N -60.292 25.097 -7.766 -4.348 -2.872 -0.700 H171 RVU 42 RVU H181 H16 H 0 0 N N N -60.387 25.186 -10.232 -6.725 -3.130 -0.133 H181 RVU 43 RVU H191 H17 H 0 0 N N N -62.410 24.522 -11.441 -8.033 -1.201 0.652 H191 RVU 44 RVU H201 H18 H 0 0 N N N -64.412 23.751 -10.239 -6.979 1.004 0.881 H201 RVU 45 RVU H12 H19 H 0 1 N N N -65.550 23.478 -5.114 -1.992 2.786 -0.031 H12 RVU 46 RVU H31 H20 H 0 1 N N N -61.988 24.389 -5.531 -2.271 -0.837 -0.784 H31 RVU 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RVU C19 C20 DOUB Y N 1 RVU C19 C18 SING Y N 2 RVU C20 C16 SING Y N 3 RVU C18 C17 DOUB Y N 4 RVU C16 C15 DOUB Y N 5 RVU C16 N4 SING Y N 6 RVU C17 C15 SING Y N 7 RVU C15 N3 SING Y N 8 RVU N4 C3 DOUB Y N 9 RVU N3 C3 SING Y N 10 RVU C3 N1 SING N N 11 RVU N1 C2 SING N N 12 RVU C2 O3 DOUB N N 13 RVU C2 C1 SING N N 14 RVU C1 C4 SING N N 15 RVU C1 C6 SING N N 16 RVU C4 N2 SING N N 17 RVU C6 C5 SING N N 18 RVU N2 C5 SING N N 19 RVU N2 C7 SING N N 20 RVU C5 O1 DOUB N N 21 RVU O2 C14 SING N N 22 RVU O2 C8 SING N N 23 RVU C7 C12 DOUB Y N 24 RVU C7 C8 SING Y N 25 RVU C12 C11 SING Y N 26 RVU C8 C9 DOUB Y N 27 RVU C9 C10 SING Y N 28 RVU C11 C10 DOUB Y N 29 RVU C11 C13 SING N N 30 RVU C9 H91 SING N N 31 RVU C1 H11 SING N N 32 RVU C4 H41 SING N N 33 RVU C4 H42 SING N N 34 RVU C6 H62 SING N N 35 RVU C6 H61 SING N N 36 RVU C10 H101 SING N N 37 RVU C12 H121 SING N N 38 RVU C13 H131 SING N N 39 RVU C13 H133 SING N N 40 RVU C13 H132 SING N N 41 RVU C14 H141 SING N N 42 RVU C14 H142 SING N N 43 RVU C14 H143 SING N N 44 RVU C17 H171 SING N N 45 RVU C18 H181 SING N N 46 RVU C19 H191 SING N N 47 RVU C20 H201 SING N N 48 RVU N1 H12 SING N N 49 RVU N3 H31 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RVU InChI InChI 1.06 "InChI=1S/C20H20N4O3/c1-12-7-8-17(27-2)16(9-12)24-11-13(10-18(24)25)19(26)23-20-21-14-5-3-4-6-15(14)22-20/h3-9,13H,10-11H2,1-2H3,(H2,21,22,23,26)/t13-/m0/s1" RVU InChIKey InChI 1.06 XSNQFQPVHIAZMA-ZDUSSCGKSA-N RVU SMILES_CANONICAL CACTVS 3.385 "COc1ccc(C)cc1N2C[C@H](CC2=O)C(=O)Nc3[nH]c4ccccc4n3" RVU SMILES CACTVS 3.385 "COc1ccc(C)cc1N2C[CH](CC2=O)C(=O)Nc3[nH]c4ccccc4n3" RVU SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(c(c1)N2CC(CC2=O)C(=O)Nc3[nH]c4ccccc4n3)OC" RVU SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(c(c1)N2CC(CC2=O)C(=O)Nc3[nH]c4ccccc4n3)OC" # _pdbx_chem_comp_identifier.comp_id RVU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "~{N}-(1~{H}-benzimidazol-2-yl)-1-(2-methoxy-5-methyl-phenyl)-5-oxidanylidene-pyrrolidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RVU "Create component" 2022-12-07 PDBE RVU "Initial release" 2023-09-13 RCSB #