data_RVW # _chem_comp.id RVW _chem_comp.name "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H12 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms thioglucose _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 196.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RVW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ARF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RVW C4 C1 C 0 1 N N S N N N 18.566 -16.170 -3.887 -1.518 0.030 0.790 C4 RVW 1 RVW C5 C2 C 0 1 N N S N N N 17.795 -14.956 -4.369 -0.613 1.258 0.666 C5 RVW 2 RVW C6 C3 C 0 1 N N N N N N 16.741 -16.082 -7.743 2.710 -0.401 0.327 C6 RVW 3 RVW C1 C4 C 0 1 N N R N N N 17.670 -17.474 -5.862 0.420 -1.374 0.085 C1 RVW 4 RVW C2 C5 C 0 1 N N R N N N 17.903 -17.468 -4.348 -1.049 -1.044 -0.197 C2 RVW 5 RVW C3 C6 C 0 1 N N S N N N 16.932 -16.190 -6.236 1.251 -0.090 -0.012 C3 RVW 6 RVW O1 O1 O 0 1 N N N N N N 17.672 -15.034 -5.792 0.742 0.875 0.910 O1 RVW 7 RVW O2 O2 O 0 1 N N N N N N 16.923 -18.614 -6.229 0.889 -2.323 -0.875 O2 RVW 8 RVW O3 O3 O 0 1 N N N N N N 18.682 -18.590 -3.951 -1.843 -2.221 -0.036 O3 RVW 9 RVW O4 O4 O 0 1 N N N N N N 18.643 -16.170 -2.465 -2.866 0.398 0.490 O4 RVW 10 RVW O5 O5 O 0 1 N N N N N N 16.031 -14.900 -8.103 3.506 0.769 0.124 O5 RVW 11 RVW S1 S1 S 0 1 N N N N N N 16.173 -14.737 -3.592 -0.755 1.949 -1.005 S1 RVW 12 RVW H9 H1 H 0 1 N N N N N N 19.579 -16.130 -4.313 -1.465 -0.361 1.806 H9 RVW 13 RVW H10 H2 H 0 1 N N N N N N 18.367 -14.056 -4.101 -0.916 2.008 1.397 H10 RVW 14 RVW H11 H3 H 0 1 N N N N N N 16.176 -16.958 -8.094 2.783 -0.713 1.369 H11 RVW 15 RVW H12 H4 H 0 1 N N N N N N 17.729 -16.065 -8.227 3.071 -1.202 -0.318 H12 RVW 16 RVW H6 H5 H 0 1 N N N N N N 18.647 -17.479 -6.368 0.513 -1.793 1.087 H6 RVW 17 RVW H7 H6 H 0 1 N N N N N N 16.918 -17.528 -3.862 -1.150 -0.671 -1.216 H7 RVW 18 RVW H8 H7 H 0 1 N N N N N N 15.942 -16.203 -5.757 1.190 0.306 -1.026 H8 RVW 19 RVW H2 H8 H 0 1 N N N N N N 17.401 -19.398 -5.987 0.403 -3.159 -0.871 H2 RVW 20 RVW H3 H9 H 0 1 N N N N N N 18.815 -18.567 -3.011 -2.786 -2.085 -0.199 H3 RVW 21 RVW H4 H10 H 0 1 N N N N N N 19.127 -16.934 -2.174 -3.228 1.077 1.076 H4 RVW 22 RVW H5 H11 H 0 1 N N N N N N 15.930 -14.866 -9.047 4.444 0.646 0.320 H5 RVW 23 RVW H1 H12 H 0 1 N N N N N N 16.482 -14.689 -2.330 0.080 3.003 -0.969 H1 RVW 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RVW O5 C6 SING N N 1 RVW C6 C3 SING N N 2 RVW C3 C1 SING N N 3 RVW C3 O1 SING N N 4 RVW O2 C1 SING N N 5 RVW C1 C2 SING N N 6 RVW O1 C5 SING N N 7 RVW C5 C4 SING N N 8 RVW C5 S1 SING N N 9 RVW C2 O3 SING N N 10 RVW C2 C4 SING N N 11 RVW C4 O4 SING N N 12 RVW C4 H9 SING N N 13 RVW C5 H10 SING N N 14 RVW C6 H11 SING N N 15 RVW C6 H12 SING N N 16 RVW C1 H6 SING N N 17 RVW C2 H7 SING N N 18 RVW C3 H8 SING N N 19 RVW O2 H2 SING N N 20 RVW O3 H3 SING N N 21 RVW O4 H4 SING N N 22 RVW O5 H5 SING N N 23 RVW S1 H1 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RVW InChI InChI 1.03 "InChI=1S/C6H12O5S/c7-1-2-3(8)4(9)5(10)6(12)11-2/h2-10,12H,1H2/t2-,3-,4+,5-,6-/m0/s1" RVW InChIKey InChI 1.03 JUSMHIGDXPKSID-QYESYBIKSA-N RVW SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1O[C@@H](S)[C@@H](O)[C@H](O)[C@H]1O" RVW SMILES CACTVS 3.385 "OC[CH]1O[CH](S)[CH](O)[CH](O)[CH]1O" RVW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]([C@H]([C@@H]([C@@H](O1)S)O)O)O)O" RVW SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)S)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id RVW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RVW _pdbx_chem_comp_synonyms.name thioglucose _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RVW "Create component" 2020-10-25 PDBE RVW "Initial release" 2020-12-02 RCSB RVW "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id RVW _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom S1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #