data_RVX # _chem_comp.id RVX _chem_comp.name "O-[methyl(2-methylpropoxy)phosphoryl]-L-serine" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H18 N O5 P" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-02-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 239.206 _chem_comp.one_letter_code S _chem_comp.three_letter_code RVX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZLT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RVX N N N 0 1 N N N N N N 7.419 5.039 -37.275 2.330 -0.166 -1.878 N RVX 1 RVX CA CA C 0 1 N N S N N N 8.592 4.189 -36.999 2.527 0.298 -0.498 CA RVX 2 RVX C C C 0 1 N N N N N N 9.739 4.428 -38.037 3.453 -0.648 0.223 C RVX 3 RVX O O O 0 1 N N N N N N 10.256 5.521 -38.131 3.617 -1.769 -0.196 O RVX 4 RVX CB CB C 0 1 N N N N N N 8.122 2.703 -36.947 1.179 0.340 0.223 CB RVX 5 RVX OG OG O 0 1 N N N N N N 9.037 1.835 -36.333 0.341 1.322 -0.390 OG RVX 6 RVX P1 P1 P 0 1 N N R N N N 9.321 0.299 -36.841 -1.156 1.636 0.113 P1 RVX 7 RVX O1 O1 O 0 1 N N N N N N 9.655 0.357 -38.285 -1.131 1.972 1.555 O1 RVX 8 RVX C1 C1 C 0 1 N N N N N N 10.565 -0.348 -35.820 -1.830 3.045 -0.827 C1 RVX 9 RVX O2 O2 O 0 1 N N N N N N 7.988 -0.650 -36.646 -2.083 0.341 -0.120 O2 RVX 10 RVX C2 C2 C 0 1 N N N N N N 6.678 -0.369 -37.145 -1.878 -0.897 0.563 C2 RVX 11 RVX C3 C3 C 0 1 N N N N N N 5.824 -1.602 -37.600 -2.931 -1.911 0.109 C3 RVX 12 RVX C5 C5 C 0 1 N N N N N N 5.265 -1.384 -39.010 -2.726 -2.228 -1.373 C5 RVX 13 RVX C4 C4 C 0 1 N N N N N N 4.620 -1.772 -36.664 -2.790 -3.194 0.930 C4 RVX 14 RVX OXT OXT O 0 1 N Y N N N N 10.108 3.403 -38.804 4.096 -0.244 1.330 OXT RVX 15 RVX HN1 HN1 H 0 1 N N N N N N 6.709 4.860 -36.594 3.197 -0.141 -2.395 HN1 RVX 16 RVX HN2 HN2 H 0 1 N N N N N N 7.687 6.001 -37.231 1.926 -1.090 -1.894 HN2 RVX 17 RVX HA HA H 0 1 N N N N N N 8.986 4.447 -36.005 2.965 1.296 -0.509 HA RVX 18 RVX HB1C HB1C H 0 0 N N N N N N 7.176 2.659 -36.388 0.701 -0.637 0.157 HB1C RVX 19 RVX HB2C HB2C H 0 0 N N N N N N 7.955 2.357 -37.978 1.334 0.599 1.270 HB2C RVX 20 RVX HXT HXT H 0 1 N Y N N N N 10.802 3.680 -39.391 4.679 -0.886 1.758 HXT RVX 21 RVX H11C H11C H 0 0 N N N N N N 10.790 -1.381 -36.125 -1.848 2.798 -1.888 H11C RVX 22 RVX H12C H12C H 0 0 N N N N N N 11.472 0.267 -35.913 -2.843 3.257 -0.486 H12C RVX 23 RVX H13C H13C H 0 0 N N N N N N 10.222 -0.340 -34.775 -1.202 3.921 -0.669 H13C RVX 24 RVX H21C H21C H 0 0 N N N N N N 6.121 0.148 -36.350 -0.883 -1.278 0.334 H21C RVX 25 RVX H22C H22C H 0 0 N N N N N N 6.787 0.300 -38.011 -1.967 -0.738 1.638 H22C RVX 26 RVX H3 H3 H 0 1 N N N N N N 6.447 -2.508 -37.579 -3.926 -1.492 0.257 H3 RVX 27 RVX H51C H51C H 0 0 N N N N N N 4.670 -2.260 -39.309 -1.731 -2.647 -1.521 H51C RVX 28 RVX H52C H52C H 0 0 N N N N N N 4.627 -0.488 -39.017 -3.476 -2.951 -1.697 H52C RVX 29 RVX H53C H53C H 0 0 N N N N N N 6.097 -1.247 -39.717 -2.826 -1.314 -1.958 H53C RVX 30 RVX H41C H41C H 0 0 N N N N N N 4.023 -2.638 -36.987 -2.935 -2.968 1.986 H41C RVX 31 RVX H42C H42C H 0 0 N N N N N N 4.975 -1.934 -35.636 -3.539 -3.916 0.607 H42C RVX 32 RVX H43C H43C H 0 0 N N N N N N 3.998 -0.865 -36.698 -1.794 -3.613 0.782 H43C RVX 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RVX N CA SING N N 1 RVX CA C SING N N 2 RVX CA CB SING N N 3 RVX C O DOUB N N 4 RVX C OXT SING N N 5 RVX CB OG SING N N 6 RVX OG P1 SING N N 7 RVX P1 O1 DOUB N N 8 RVX P1 C1 SING N N 9 RVX P1 O2 SING N N 10 RVX O2 C2 SING N N 11 RVX C2 C3 SING N N 12 RVX C3 C5 SING N N 13 RVX C3 C4 SING N N 14 RVX N HN1 SING N N 15 RVX N HN2 SING N N 16 RVX CA HA SING N N 17 RVX CB HB1C SING N N 18 RVX CB HB2C SING N N 19 RVX OXT HXT SING N N 20 RVX C1 H11C SING N N 21 RVX C1 H12C SING N N 22 RVX C1 H13C SING N N 23 RVX C2 H21C SING N N 24 RVX C2 H22C SING N N 25 RVX C3 H3 SING N N 26 RVX C5 H51C SING N N 27 RVX C5 H52C SING N N 28 RVX C5 H53C SING N N 29 RVX C4 H41C SING N N 30 RVX C4 H42C SING N N 31 RVX C4 H43C SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RVX SMILES ACDLabs 12.01 "O=C(O)C(N)COP(=O)(OCC(C)C)C" RVX InChI InChI 1.03 "InChI=1S/C8H18NO5P/c1-6(2)4-13-15(3,12)14-5-7(9)8(10)11/h6-7H,4-5,9H2,1-3H3,(H,10,11)/t7-,15+/m0/s1" RVX InChIKey InChI 1.03 LKLIFUVJCVCJGG-NZFNHWASSA-N RVX SMILES_CANONICAL CACTVS 3.385 "CC(C)CO[P@@](C)(=O)OC[C@H](N)C(O)=O" RVX SMILES CACTVS 3.385 "CC(C)CO[P](C)(=O)OC[CH](N)C(O)=O" RVX SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)CO[P@](=O)(C)OC[C@@H](C(=O)O)N" RVX SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)COP(=O)(C)OCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RVX "SYSTEMATIC NAME" ACDLabs 12.01 "O-[(R)-methyl(2-methylpropoxy)phosphoryl]-L-serine" RVX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-3-[methyl(2-methylpropoxy)phosphoryl]oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RVX "Create component" 2013-02-04 EBI RVX "Initial release" 2013-03-27 RCSB RVX "Modify descriptor" 2014-09-05 RCSB RVX "Modify PCM" 2024-09-27 PDBE #