data_RX5
#
_chem_comp.id RX5
_chem_comp.name
;methyl
(2-{(R)-(3-chlorophenyl)[(3R)-1-({(2S)-2-(methylamino)-3-[(3R)-tetrahydro-2H-pyran-3-yl]propyl}carbamoyl)piperidin-3-yl]
methoxy}ethyl)carbamate
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H41 Cl N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms VTP-27999
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-02-14
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 525.081
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RX5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3Q4B
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RX5 C1 C1 C 0 1 N N N 25.316 -9.197 -6.371 -4.979 1.725 1.287 C1 RX5 1
RX5 N1 N1 N 0 1 N N N 25.535 -8.072 -7.288 -5.133 0.264 1.289 N1 RX5 2
RX5 O1 O1 O 0 1 N N N 25.431 -11.235 -11.169 -1.051 0.282 -1.205 O1 RX5 3
RX5 C2 C2 C 0 1 N N S 26.292 -8.409 -8.525 -5.051 -0.276 -0.075 C2 RX5 4
RX5 N2 N2 N 0 1 N N N 26.006 -9.165 -10.836 -2.625 -0.407 0.203 N2 RX5 5
RX5 O2 O2 O 0 1 N N N 29.203 -7.157 -13.438 3.774 -0.538 1.138 O2 RX5 6
RX5 C3 C3 C 0 1 N N N 25.522 -9.327 -9.465 -3.690 0.073 -0.680 C3 RX5 7
RX5 N3 N3 N 0 1 N N N 26.338 -10.148 -12.924 -0.356 -0.561 0.729 N3 RX5 8
RX5 O3 O3 O 0 1 N N N 27.854 -2.694 -13.615 6.594 -4.230 0.054 O3 RX5 9
RX5 C4 C4 C 0 1 N N N 25.908 -10.203 -11.650 -1.334 -0.211 -0.130 C4 RX5 10
RX5 N4 N4 N 0 1 N N N 27.894 -4.790 -12.589 5.740 -2.194 -0.190 N4 RX5 11
RX5 O4 O4 O 0 1 N N N 25.855 -3.622 -12.898 6.239 -3.544 -2.027 O4 RX5 12
RX5 C5 C5 C 0 1 N N N 26.944 -8.962 -13.581 1.049 -0.253 0.430 C5 RX5 13
RX5 C6 C6 C 0 1 N N R 28.412 -9.326 -13.884 1.650 0.512 1.613 C6 RX5 14
RX5 C7 C7 C 0 1 N N N 28.460 -10.576 -14.802 1.443 -0.296 2.896 C7 RX5 15
RX5 C8 C8 C 0 1 N N N 27.630 -11.762 -14.258 -0.055 -0.479 3.149 C8 RX5 16
RX5 C9 C9 C 0 1 N N N 26.214 -11.335 -13.792 -0.675 -1.251 1.987 C9 RX5 17
RX5 C10 C10 C 0 1 N N R 29.187 -8.143 -14.466 3.147 0.723 1.377 C10 RX5 18
RX5 C11 C11 C 0 1 N N N 27.645 -8.985 -8.135 -6.162 0.334 -0.932 C11 RX5 19
RX5 C12 C12 C 0 1 N N R 28.756 -8.741 -9.150 -7.523 -0.118 -0.399 C12 RX5 20
RX5 C13 C13 C 0 1 N N N 29.801 -9.844 -8.965 -7.664 -1.632 -0.572 C13 RX5 21
RX5 O14 O14 O 0 1 N N N 30.888 -9.647 -9.889 -8.958 -2.043 -0.127 O14 RX5 22
RX5 C15 C15 C 0 1 N N N 31.633 -8.482 -9.528 -10.039 -1.456 -0.854 C15 RX5 23
RX5 C16 C16 C 0 1 N N N 30.726 -7.261 -9.642 -9.994 0.066 -0.693 C16 RX5 24
RX5 C17 C17 C 0 1 N N N 29.449 -7.419 -8.858 -8.638 0.583 -1.182 C17 RX5 25
RX5 C18 C18 C 0 1 N N N 29.560 -5.865 -13.965 5.137 -0.600 1.563 C18 RX5 26
RX5 C19 C19 C 0 1 N N N 29.354 -4.896 -12.796 5.703 -1.988 1.260 C19 RX5 27
RX5 C20 C20 C 0 1 N N N 27.284 -3.670 -13.051 6.205 -3.355 -0.695 C20 RX5 28
RX5 C21 C21 C 0 1 Y N N 30.619 -8.444 -14.794 3.346 1.618 0.181 C21 RX5 29
RX5 C22 C22 C 0 1 Y N N 31.541 -8.737 -13.792 3.621 2.961 0.361 C22 RX5 30
RX5 C23 C23 C 0 1 Y N N 32.858 -9.012 -14.117 3.805 3.782 -0.737 C23 RX5 31
RX5 C24 C24 C 0 1 Y N N 33.325 -8.986 -15.422 3.713 3.259 -2.015 C24 RX5 32
RX5 C25 C25 C 0 1 Y N N 32.394 -8.687 -16.412 3.438 1.916 -2.193 C25 RX5 33
RX5 C26 C26 C 0 1 Y N N 31.058 -8.441 -16.109 3.260 1.095 -1.095 C26 RX5 34
RX5 C27 C27 C 0 1 N N N 25.111 -2.621 -13.623 6.752 -4.818 -2.499 C27 RX5 35
RX5 CL2 CL2 CL 0 0 N N N 33.991 -9.423 -12.806 4.149 5.468 -0.513 CL2 RX5 36
RX5 H1 H1 H 0 1 N N N 24.752 -8.850 -5.493 -4.009 1.987 0.865 H1 RX5 37
RX5 H1A H1A H 0 1 N N N 24.745 -9.984 -6.886 -5.770 2.173 0.686 H1A RX5 38
RX5 H1B H1B H 0 1 N N N 26.287 -9.600 -6.047 -5.043 2.099 2.309 H1B RX5 39
RX5 HN1 HN1 H 0 1 N N N 24.642 -7.714 -7.559 -4.451 -0.170 1.892 HN1 RX5 40
RX5 H2 H2 H 0 1 N N N 26.480 -7.471 -9.067 -5.168 -1.359 -0.044 H2 RX5 41
RX5 HN2 HN2 H 0 1 N N N 26.398 -8.299 -11.147 -2.849 -0.867 1.027 HN2 RX5 42
RX5 H3 H3 H 0 1 N N N 25.664 -10.371 -9.150 -3.595 -0.402 -1.657 H3 RX5 43
RX5 H3A H3A H 0 1 N N N 24.452 -9.074 -9.425 -3.609 1.154 -0.793 H3A RX5 44
RX5 HN4 HN4 H 0 1 N N N 27.379 -5.513 -12.128 5.430 -1.496 -0.787 HN4 RX5 45
RX5 H5 H5 H 0 1 N N N 26.410 -8.731 -14.515 1.602 -1.180 0.276 H5 RX5 46
RX5 H5A H5A H 0 1 N N N 26.900 -8.092 -12.909 1.105 0.361 -0.469 H5A RX5 47
RX5 H6 H6 H 0 1 N N N 28.888 -9.600 -12.931 1.156 1.480 1.708 H6 RX5 48
RX5 H7 H7 H 0 1 N N N 28.067 -10.299 -15.791 1.916 -1.272 2.790 H7 RX5 49
RX5 H7A H7A H 0 1 N N N 29.507 -10.898 -14.900 1.892 0.235 3.736 H7A RX5 50
RX5 H8 H8 H 0 1 N N N 27.527 -12.514 -15.054 -0.201 -1.035 4.076 H8 RX5 51
RX5 H8A H8A H 0 1 N N N 28.164 -12.203 -13.403 -0.532 0.498 3.231 H8A RX5 52
RX5 H9 H9 H 0 1 N N N 25.746 -12.157 -13.230 -1.757 -1.295 2.115 H9 RX5 53
RX5 H9A H9A H 0 1 N N N 25.595 -11.090 -14.667 -0.266 -2.261 1.963 H9A RX5 54
RX5 H10 H10 H 0 1 N N N 28.669 -7.770 -15.362 3.591 1.189 2.257 H10 RX5 55
RX5 H11 H11 H 0 1 N N N 27.948 -8.532 -7.179 -6.098 1.421 -0.891 H11 RX5 56
RX5 H11A H11A H 0 0 N N N 27.531 -10.071 -8.006 -6.048 0.002 -1.964 H11A RX5 57
RX5 H12 H12 H 0 1 N N N 28.356 -8.754 -10.175 -7.604 0.137 0.658 H12 RX5 58
RX5 H13 H13 H 0 1 N N N 30.187 -9.812 -7.935 -7.542 -1.891 -1.624 H13 RX5 59
RX5 H13A H13A H 0 0 N N N 29.336 -10.823 -9.152 -6.899 -2.138 0.018 H13A RX5 60
RX5 H15 H15 H 0 1 N N N 31.993 -8.580 -8.493 -9.948 -1.712 -1.910 H15 RX5 61
RX5 H15A H15A H 0 0 N N N 32.492 -8.368 -10.205 -10.985 -1.835 -0.468 H15A RX5 62
RX5 H16 H16 H 0 1 N N N 31.267 -6.382 -9.262 -10.791 0.518 -1.283 H16 RX5 63
RX5 H16A H16A H 0 0 N N N 30.473 -7.106 -10.701 -10.125 0.324 0.358 H16A RX5 64
RX5 H17 H17 H 0 1 N N N 28.768 -6.596 -9.121 -8.578 1.659 -1.018 H17 RX5 65
RX5 H17A H17A H 0 0 N N N 29.684 -7.372 -7.784 -8.528 0.368 -2.245 H17A RX5 66
RX5 H18 H18 H 0 1 N N N 30.609 -5.857 -14.295 5.718 0.154 1.032 H18 RX5 67
RX5 H18A H18A H 0 0 N N N 28.908 -5.597 -14.810 5.192 -0.412 2.635 H18A RX5 68
RX5 H19 H19 H 0 1 N N N 29.775 -3.910 -13.041 5.070 -2.748 1.719 H19 RX5 69
RX5 H19A H19A H 0 0 N N N 29.839 -5.287 -11.889 6.713 -2.065 1.663 H19A RX5 70
RX5 H22 H22 H 0 1 N N N 31.227 -8.750 -12.759 3.692 3.368 1.358 H22 RX5 71
RX5 H24 H24 H 0 1 N N N 34.359 -9.188 -15.658 3.856 3.899 -2.872 H24 RX5 72
RX5 H25 H25 H 0 1 N N N 32.716 -8.645 -17.442 3.366 1.507 -3.190 H25 RX5 73
RX5 H26 H26 H 0 1 N N N 30.356 -8.246 -16.906 3.050 0.045 -1.235 H26 RX5 74
RX5 H27 H27 H 0 1 N N N 24.040 -2.723 -13.395 6.724 -4.839 -3.589 H27 RX5 75
RX5 H27A H27A H 0 0 N N N 25.456 -1.620 -13.324 7.780 -4.943 -2.159 H27A RX5 76
RX5 H27B H27B H 0 0 N N N 25.270 -2.757 -14.703 6.137 -5.626 -2.104 H27B RX5 77
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RX5 C1 N1 SING N N 1
RX5 N1 C2 SING N N 2
RX5 O1 C4 DOUB N N 3
RX5 C2 C3 SING N N 4
RX5 C2 C11 SING N N 5
RX5 N2 C3 SING N N 6
RX5 N2 C4 SING N N 7
RX5 O2 C10 SING N N 8
RX5 O2 C18 SING N N 9
RX5 N3 C4 SING N N 10
RX5 N3 C5 SING N N 11
RX5 N3 C9 SING N N 12
RX5 O3 C20 DOUB N N 13
RX5 N4 C19 SING N N 14
RX5 N4 C20 SING N N 15
RX5 O4 C20 SING N N 16
RX5 O4 C27 SING N N 17
RX5 C5 C6 SING N N 18
RX5 C6 C7 SING N N 19
RX5 C6 C10 SING N N 20
RX5 C7 C8 SING N N 21
RX5 C8 C9 SING N N 22
RX5 C10 C21 SING N N 23
RX5 C11 C12 SING N N 24
RX5 C12 C13 SING N N 25
RX5 C12 C17 SING N N 26
RX5 C13 O14 SING N N 27
RX5 O14 C15 SING N N 28
RX5 C15 C16 SING N N 29
RX5 C16 C17 SING N N 30
RX5 C18 C19 SING N N 31
RX5 C21 C22 DOUB Y N 32
RX5 C21 C26 SING Y N 33
RX5 C22 C23 SING Y N 34
RX5 C23 C24 DOUB Y N 35
RX5 C23 CL2 SING N N 36
RX5 C24 C25 SING Y N 37
RX5 C25 C26 DOUB Y N 38
RX5 C1 H1 SING N N 39
RX5 C1 H1A SING N N 40
RX5 C1 H1B SING N N 41
RX5 N1 HN1 SING N N 42
RX5 C2 H2 SING N N 43
RX5 N2 HN2 SING N N 44
RX5 C3 H3 SING N N 45
RX5 C3 H3A SING N N 46
RX5 N4 HN4 SING N N 47
RX5 C5 H5 SING N N 48
RX5 C5 H5A SING N N 49
RX5 C6 H6 SING N N 50
RX5 C7 H7 SING N N 51
RX5 C7 H7A SING N N 52
RX5 C8 H8 SING N N 53
RX5 C8 H8A SING N N 54
RX5 C9 H9 SING N N 55
RX5 C9 H9A SING N N 56
RX5 C10 H10 SING N N 57
RX5 C11 H11 SING N N 58
RX5 C11 H11A SING N N 59
RX5 C12 H12 SING N N 60
RX5 C13 H13 SING N N 61
RX5 C13 H13A SING N N 62
RX5 C15 H15 SING N N 63
RX5 C15 H15A SING N N 64
RX5 C16 H16 SING N N 65
RX5 C16 H16A SING N N 66
RX5 C17 H17 SING N N 67
RX5 C17 H17A SING N N 68
RX5 C18 H18 SING N N 69
RX5 C18 H18A SING N N 70
RX5 C19 H19 SING N N 71
RX5 C19 H19A SING N N 72
RX5 C22 H22 SING N N 73
RX5 C24 H24 SING N N 74
RX5 C25 H25 SING N N 75
RX5 C26 H26 SING N N 76
RX5 C27 H27 SING N N 77
RX5 C27 H27A SING N N 78
RX5 C27 H27B SING N N 79
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RX5 SMILES ACDLabs 12.01 "Clc1cccc(c1)C(OCCNC(=O)OC)C3CCCN(C(=O)NCC(NC)CC2CCCOC2)C3"
RX5 InChI InChI 1.03 "InChI=1S/C26H41ClN4O5/c1-28-23(14-19-6-5-12-35-18-19)16-30-25(32)31-11-4-8-21(17-31)24(20-7-3-9-22(27)15-20)36-13-10-29-26(33)34-2/h3,7,9,15,19,21,23-24,28H,4-6,8,10-14,16-18H2,1-2H3,(H,29,33)(H,30,32)/t19-,21-,23+,24+/m1/s1"
RX5 InChIKey InChI 1.03 NXWASIVXQMMPLM-ZXMXYHOLSA-N
RX5 SMILES_CANONICAL CACTVS 3.370 "CN[C@H](CNC(=O)N1CCC[C@H](C1)[C@@H](OCCNC(=O)OC)c2cccc(Cl)c2)C[C@H]3CCCOC3"
RX5 SMILES CACTVS 3.370 "CN[CH](CNC(=O)N1CCC[CH](C1)[CH](OCCNC(=O)OC)c2cccc(Cl)c2)C[CH]3CCCOC3"
RX5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN[C@@H](C[C@H]1CCCOC1)CNC(=O)N2CCC[C@H](C2)[C@H](c3cccc(c3)Cl)OCCNC(=O)OC"
RX5 SMILES "OpenEye OEToolkits" 1.7.6 "CNC(CC1CCCOC1)CNC(=O)N2CCCC(C2)C(c3cccc(c3)Cl)OCCNC(=O)OC"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RX5 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (2-{(R)-(3-chlorophenyl)[(3R)-1-({(2S)-2-(methylamino)-3-[(3R)-tetrahydro-2H-pyran-3-yl]propyl}carbamoyl)piperidin-3-yl]methoxy}ethyl)carbamate"
RX5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "methyl N-[2-[(R)-(3-chlorophenyl)-[(3R)-1-[[(2S)-2-(methylamino)-3-[(3R)-oxan-3-yl]propyl]carbamoyl]piperidin-3-yl]methoxy]ethyl]carbamate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RX5 "Create component" 2011-02-14 RCSB
RX5 "Modify aromatic_flag" 2011-06-04 RCSB
RX5 "Modify descriptor" 2011-06-04 RCSB
RX5 "Modify synonyms" 2011-11-16 RCSB
RX5 "Modify atom id" 2011-11-16 RCSB
RX5 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id RX5
_pdbx_chem_comp_synonyms.name VTP-27999
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##