data_RYE # _chem_comp.id RYE _chem_comp.name "hydrolyzed ceftazidime" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H25 N6 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2R)-2-[(1R)-1-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5-(pyridin-1-ium-1-ylmethyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2020-11-03 _chem_comp.pdbx_modified_date 2020-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 565.599 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RYE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ASS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RYE C C1 C 0 1 N N N 36.574 -68.957 31.784 -0.294 -1.431 -1.299 C RYE 1 RYE S1 S1 S 0 1 N N N 34.861 -72.544 32.080 -1.831 0.973 -0.107 S1 RYE 2 RYE C2 C2 C 0 1 N N N 34.710 -73.371 33.604 -3.352 1.336 0.820 C2 RYE 3 RYE C3 C3 C 0 1 N N N 35.805 -73.226 34.447 -4.098 0.058 1.074 C3 RYE 4 RYE C4 C4 C 0 1 N N N 37.142 -72.356 33.875 -3.579 -1.147 1.060 C4 RYE 5 RYE N5 N1 N 0 1 N N N 36.661 -71.044 33.393 -2.260 -1.491 0.794 N5 RYE 6 RYE C6 C5 C 0 1 N N R 35.378 -71.107 32.431 -1.198 -0.474 0.803 C6 RYE 7 RYE CA C6 C 0 1 N N R 35.950 -70.236 31.253 0.052 -1.020 0.109 CA RYE 8 RYE N10 N2 N 0 1 N N N 36.945 -71.031 30.650 1.084 0.019 0.075 N10 RYE 9 RYE C11 C7 C 0 1 N N N 37.134 -70.907 29.231 2.385 -0.326 -0.005 C11 RYE 10 RYE O12 O1 O 0 1 N N N 36.521 -70.182 28.582 2.697 -1.493 -0.144 O12 RYE 11 RYE C13 C8 C 0 1 N N N 38.147 -71.675 28.497 3.434 0.717 0.074 C13 RYE 12 RYE C14 C9 C 0 1 Y N N 39.460 -71.009 28.286 3.055 2.145 0.124 C14 RYE 13 RYE C15 C10 C 0 1 Y N N 39.910 -69.664 28.576 3.966 3.137 0.071 C15 RYE 14 RYE N16 N3 N 0 1 N N N 37.877 -72.712 27.944 4.692 0.375 0.101 N16 RYE 15 RYE S16 S2 S 0 1 Y N N 41.354 -69.597 28.150 3.113 4.676 0.158 S16 RYE 16 RYE C17 C11 C 0 1 Y N N 41.726 -71.015 27.591 1.576 3.823 0.259 C17 RYE 17 RYE O17 O2 O 0 1 N N N 36.824 -73.406 28.440 5.060 -0.982 -0.063 O17 RYE 18 RYE C18 C12 C 0 1 N N N 36.202 -74.185 27.443 6.470 -1.212 -0.012 C18 RYE 19 RYE N18 N4 N 0 1 N N N 43.057 -71.268 27.108 0.333 4.426 0.361 N18 RYE 20 RYE C19 C13 C 0 1 N N N 34.752 -74.571 27.886 7.156 -0.420 -1.128 C19 RYE 21 RYE N19 N5 N 0 1 Y N N 40.594 -71.839 27.680 1.786 2.545 0.219 N19 RYE 22 RYE C20 C14 C 0 1 N N N 36.120 -73.514 26.052 7.012 -0.757 1.344 C20 RYE 23 RYE C21 C15 C 0 1 N N N 37.160 -75.395 27.313 6.746 -2.682 -0.197 C21 RYE 24 RYE O2A O3 O 0 1 N N N 37.607 -75.828 26.185 5.830 -3.454 -0.355 O2A RYE 25 RYE O2B O4 O 0 1 N N N 37.498 -75.955 28.401 8.010 -3.134 -0.185 O2B RYE 26 RYE "C3'" C16 C 0 1 N N N 36.232 -74.317 35.359 -5.571 0.169 1.373 "C3'" RYE 27 RYE "C4'" C17 C 0 1 N N N 38.286 -72.176 34.799 -4.499 -2.261 1.359 "C4'" RYE 28 RYE O4A O5 O 0 1 N N N 39.416 -72.310 34.413 -4.889 -2.984 0.464 O4A RYE 29 RYE O4B O6 O 0 1 N N N 38.117 -71.902 35.968 -4.907 -2.476 2.625 O4B RYE 30 RYE N6 N6 N 1 1 Y N N 35.150 -75.259 35.514 -6.320 0.248 0.116 N6 RYE 31 RYE C26 C18 C 0 1 Y N N 33.998 -74.848 36.099 -6.850 -0.850 -0.385 C26 RYE 32 RYE C25 C19 C 0 1 Y N N 32.960 -75.749 36.247 -7.563 -0.814 -1.569 C25 RYE 33 RYE C24 C20 C 0 1 Y N N 33.110 -77.022 35.807 -7.717 0.396 -2.228 C24 RYE 34 RYE C23 C21 C 0 1 Y N N 34.264 -77.424 35.222 -7.146 1.529 -1.670 C23 RYE 35 RYE C22 C22 C 0 1 Y N N 35.307 -76.530 35.070 -6.451 1.417 -0.481 C22 RYE 36 RYE OB O7 O 0 1 N N N 35.915 -68.284 32.624 0.265 -0.910 -2.235 OB RYE 37 RYE OA O8 O 0 1 N N N 37.719 -68.468 31.465 -1.219 -2.380 -1.513 OA RYE 38 RYE H2A H1 H 0 1 N N N 33.823 -72.978 34.122 -3.096 1.803 1.770 H2A RYE 39 RYE H2 H2 H 0 1 N N N 34.572 -74.443 33.401 -3.979 2.013 0.239 H2 RYE 40 RYE HN5 H6 H 0 1 N N N 36.425 -70.488 34.190 -2.036 -2.415 0.600 HN5 RYE 41 RYE H6 H7 H 0 1 N N N 34.562 -70.549 32.913 -0.962 -0.193 1.829 H6 RYE 42 RYE HA H8 H 0 1 N N N 35.139 -69.996 30.550 0.424 -1.885 0.659 HA RYE 43 RYE HN10 H9 H 0 0 N N N 37.501 -71.661 31.192 0.832 0.955 0.111 HN10 RYE 44 RYE H15 H11 H 0 1 N N N 39.326 -68.866 29.011 5.036 3.010 -0.009 H15 RYE 45 RYE HN18 H13 H 0 0 N N N 43.609 -70.439 27.201 0.264 5.393 0.381 HN18 RYE 46 RYE H8 H14 H 0 1 N N N 43.470 -72.006 27.642 -0.467 3.881 0.412 H8 RYE 47 RYE H19A H16 H 0 0 N N N 34.278 -75.178 27.101 6.956 0.643 -0.994 H19A RYE 48 RYE H19 H17 H 0 1 N N N 34.796 -75.150 28.820 8.231 -0.595 -1.089 H19 RYE 49 RYE H19B H18 H 0 0 N N N 34.163 -73.656 28.049 6.769 -0.744 -2.094 H19B RYE 50 RYE H20 H21 H 0 1 N N N 35.622 -74.194 25.345 6.523 -1.321 2.138 H20 RYE 51 RYE H20B H22 H 0 0 N N N 35.545 -72.580 26.129 8.087 -0.932 1.383 H20B RYE 52 RYE H20A H23 H 0 0 N N N 37.135 -73.291 25.692 6.812 0.306 1.477 H20A RYE 53 RYE H11 H24 H 0 1 N N N 38.085 -76.679 28.216 8.137 -4.084 -0.307 H11 RYE 54 RYE "H3'A" H25 H 0 0 N N N 37.108 -74.830 34.934 -5.895 -0.707 1.934 "H3'A" RYE 55 RYE "H3'" H26 H 0 1 N N N 36.495 -73.894 36.340 -5.756 1.067 1.963 "H3'" RYE 56 RYE H12 H27 H 0 1 N N N 38.959 -71.837 36.403 -5.509 -3.218 2.772 H12 RYE 57 RYE H26 H28 H 0 1 N N N 33.893 -73.830 36.445 -6.726 -1.788 0.134 H26 RYE 58 RYE H25 H29 H 0 1 N N N 32.035 -75.440 36.711 -7.994 -1.717 -1.975 H25 RYE 59 RYE H24 H30 H 0 1 N N N 32.299 -77.725 35.924 -8.269 0.454 -3.155 H24 RYE 60 RYE H23 H31 H 0 1 N N N 34.369 -78.441 34.875 -7.246 2.488 -2.157 H23 RYE 61 RYE H22 H32 H 0 1 N N N 36.232 -76.839 34.605 -6.006 2.295 -0.037 H22 RYE 62 RYE H13 H33 H 0 1 N N N 37.862 -67.658 31.940 -1.406 -2.610 -2.434 H13 RYE 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RYE C CA SING N N 1 RYE C OB DOUB N N 2 RYE C OA SING N N 3 RYE S1 C2 SING N N 4 RYE S1 C6 SING N N 5 RYE C2 C3 SING N N 6 RYE C3 C4 DOUB N N 7 RYE C3 "C3'" SING N N 8 RYE C4 N5 SING N N 9 RYE C4 "C4'" SING N N 10 RYE N5 C6 SING N N 11 RYE C6 CA SING N N 12 RYE CA N10 SING N N 13 RYE N10 C11 SING N N 14 RYE C11 O12 DOUB N N 15 RYE C11 C13 SING N N 16 RYE C13 C14 SING N N 17 RYE C13 N16 DOUB N Z 18 RYE C14 C15 DOUB Y N 19 RYE C14 N19 SING Y N 20 RYE C15 S16 SING Y N 21 RYE N16 O17 SING N N 22 RYE S16 C17 SING Y N 23 RYE C17 N18 SING N N 24 RYE C17 N19 DOUB Y N 25 RYE O17 C18 SING N N 26 RYE C18 C19 SING N N 27 RYE C18 C20 SING N N 28 RYE C18 C21 SING N N 29 RYE C21 O2A DOUB N N 30 RYE C21 O2B SING N N 31 RYE "C3'" N6 SING N N 32 RYE "C4'" O4A DOUB N N 33 RYE "C4'" O4B SING N N 34 RYE N6 C26 DOUB Y N 35 RYE N6 C22 SING Y N 36 RYE C26 C25 SING Y N 37 RYE C25 C24 DOUB Y N 38 RYE C24 C23 SING Y N 39 RYE C23 C22 DOUB Y N 40 RYE C2 H2A SING N N 41 RYE C2 H2 SING N N 42 RYE N5 HN5 SING N N 43 RYE C6 H6 SING N N 44 RYE CA HA SING N N 45 RYE N10 HN10 SING N N 46 RYE C15 H15 SING N N 47 RYE N18 HN18 SING N N 48 RYE N18 H8 SING N N 49 RYE C19 H19A SING N N 50 RYE C19 H19 SING N N 51 RYE C19 H19B SING N N 52 RYE C20 H20 SING N N 53 RYE C20 H20B SING N N 54 RYE C20 H20A SING N N 55 RYE O2B H11 SING N N 56 RYE "C3'" "H3'A" SING N N 57 RYE "C3'" "H3'" SING N N 58 RYE O4B H12 SING N N 59 RYE C26 H26 SING N N 60 RYE C25 H25 SING N N 61 RYE C24 H24 SING N N 62 RYE C23 H23 SING N N 63 RYE C22 H22 SING N N 64 RYE OA H13 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RYE InChI InChI 1.03 "InChI=1S/C22H24N6O8S2/c1-22(2,20(34)35)36-27-14(12-10-38-21(23)24-12)16(29)25-15(19(32)33)17-26-13(18(30)31)11(9-37-17)8-28-6-4-3-5-7-28/h3-7,10,15,17,26H,8-9H2,1-2H3,(H5-,23,24,25,29,30,31,32,33,34,35)/p+1/b27-14-/t15-,17+/m0/s1" RYE InChIKey InChI 1.03 ZFKSAQZBKJRFHB-NUYJMBSPSA-O RYE SMILES_CANONICAL CACTVS 3.385 "CC(C)(O\N=C(/C(=O)N[C@@H]([C@@H]1NC(=C(CS1)C[n+]2ccccc2)C(O)=O)C(O)=O)c3csc(N)n3)C(O)=O" RYE SMILES CACTVS 3.385 "CC(C)(ON=C(C(=O)N[CH]([CH]1NC(=C(CS1)C[n+]2ccccc2)C(O)=O)C(O)=O)c3csc(N)n3)C(O)=O" RYE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)O)O/N=C(/c1csc(n1)N)\C(=O)N[C@@H]([C@@H]2NC(=C(CS2)C[n+]3ccccc3)C(=O)O)C(=O)O" RYE SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)O)ON=C(c1csc(n1)N)C(=O)NC(C2NC(=C(CS2)C[n+]3ccccc3)C(=O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id RYE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[(1~{R})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5-(pyridin-1-ium-1-ylmethyl)-3,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RYE _pdbx_chem_comp_synonyms.name "(2R)-2-[(1R)-1-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5-(pyridin-1-ium-1-ylmethyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RYE "Create component" 2020-11-03 PDBE RYE "Modify synonyms" 2020-11-06 PDBE RYE "Initial release" 2020-12-16 RCSB ##