data_RYI # _chem_comp.id RYI _chem_comp.name "(5R)-7-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-2lambda~6~-thia-7-azaspiro[4.5]decane-2,2-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-23 _chem_comp.pdbx_modified_date 2022-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 306.383 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RYI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SOP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RYI C17 C1 C 0 1 Y N N -44.252 -29.386 5.865 -3.312 2.319 -0.044 C17 RYI 1 RYI C15 C2 C 0 1 Y N N -46.538 -29.093 6.120 -4.291 0.287 0.412 C15 RYI 2 RYI C13 C3 C 0 1 Y N N -48.759 -28.805 5.795 -4.557 -1.916 0.745 C13 RYI 3 RYI C12 C4 C 0 1 Y N N -48.157 -28.885 4.502 -3.254 -1.759 0.460 C12 RYI 4 RYI C11 C5 C 0 1 Y N N -46.709 -29.078 4.716 -3.039 -0.331 0.236 C11 RYI 5 RYI C10 C6 C 0 1 Y N N -45.535 -29.220 3.886 -1.936 0.468 -0.101 C10 RYI 6 RYI C20 C7 C 0 1 N N N -44.887 -31.643 0.872 2.063 -0.287 0.685 C20 RYI 7 RYI C19 C8 C 0 1 N N N -44.250 -29.317 1.702 0.309 0.936 -0.621 C19 RYI 8 RYI C03 C9 C 0 1 N N N -42.231 -31.435 0.463 4.131 0.756 -0.785 C03 RYI 9 RYI C04 C10 C 0 1 N N N -43.031 -30.413 -0.360 2.736 1.373 -1.063 C04 RYI 10 RYI C05 C11 C 0 1 N N R -44.422 -30.210 0.414 1.698 0.302 -0.690 C05 RYI 11 RYI C06 C12 C 0 1 N N N -45.498 -29.570 -0.486 1.710 -0.810 -1.740 C06 RYI 12 RYI C07 C13 C 0 1 N N N -46.799 -29.360 0.279 0.630 -1.839 -1.395 C07 RYI 13 RYI C08 C14 C 0 1 N N N -46.597 -28.595 1.623 -0.729 -1.140 -1.319 C08 RYI 14 RYI N09 N1 N 0 1 N N N -45.529 -29.255 2.459 -0.686 -0.093 -0.290 N09 RYI 15 RYI N14 N2 N 0 1 Y N N -47.747 -28.945 6.727 -5.188 -0.699 0.719 N14 RYI 16 RYI N16 N3 N 0 1 Y N N -45.298 -29.260 6.699 -4.376 1.608 0.262 N16 RYI 17 RYI N18 N4 N 0 1 Y N N -44.332 -29.378 4.492 -2.120 1.779 -0.223 N18 RYI 18 RYI O01 O1 O 0 1 N N N -43.247 -32.797 2.530 4.182 0.797 1.879 O01 RYI 19 RYI O21 O2 O 0 1 N N N -43.454 -33.810 0.322 4.490 -1.378 0.771 O21 RYI 20 RYI S02 S1 S 0 1 N N N -43.422 -32.618 1.118 3.878 -0.097 0.817 S02 RYI 21 RYI H171 H1 H 0 0 N N N -43.273 -29.502 6.307 -3.419 3.388 -0.157 H171 RYI 22 RYI H131 H2 H 0 0 N N N -49.809 -28.662 6.005 -5.036 -2.859 0.962 H131 RYI 23 RYI H121 H3 H 0 0 N N N -48.664 -28.817 3.551 -2.508 -2.538 0.407 H121 RYI 24 RYI H202 H4 H 0 0 N N N -45.455 -31.572 1.811 1.565 0.269 1.480 H202 RYI 25 RYI H201 H5 H 0 0 N N N -45.518 -32.100 0.096 1.788 -1.341 0.732 H201 RYI 26 RYI H191 H6 H 0 0 N N N -43.469 -29.751 2.343 0.300 1.710 0.147 H191 RYI 27 RYI H192 H7 H 0 0 N N N -43.955 -28.300 1.403 0.064 1.380 -1.586 H192 RYI 28 RYI H032 H8 H 0 0 N N N -41.500 -31.949 -0.178 4.400 0.043 -1.565 H032 RYI 29 RYI H031 H9 H 0 0 N N N -41.706 -30.930 1.287 4.890 1.532 -0.695 H031 RYI 30 RYI H042 H10 H 0 0 N N N -43.211 -30.797 -1.375 2.592 2.263 -0.449 H042 RYI 31 RYI H041 H11 H 0 0 N N N -42.485 -29.460 -0.420 2.645 1.630 -2.119 H041 RYI 32 RYI H062 H12 H 0 0 N N N -45.689 -30.231 -1.344 1.507 -0.385 -2.723 H062 RYI 33 RYI H061 H13 H 0 0 N N N -45.132 -28.597 -0.847 2.686 -1.295 -1.746 H061 RYI 34 RYI H072 H14 H 0 0 N N N -47.489 -28.782 -0.354 0.601 -2.609 -2.166 H072 RYI 35 RYI H071 H15 H 0 0 N N N -47.240 -30.344 0.498 0.858 -2.297 -0.432 H071 RYI 36 RYI H082 H16 H 0 0 N N N -46.297 -27.559 1.407 -0.960 -0.690 -2.285 H082 RYI 37 RYI H081 H17 H 0 0 N N N -47.544 -28.593 2.183 -1.499 -1.868 -1.065 H081 RYI 38 RYI H141 H18 H 0 0 N N N -47.885 -28.938 7.717 -6.131 -0.558 0.894 H141 RYI 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RYI C06 C07 SING N N 1 RYI C06 C05 SING N N 2 RYI C04 C05 SING N N 3 RYI C04 C03 SING N N 4 RYI C07 C08 SING N N 5 RYI O21 S02 DOUB N N 6 RYI C05 C20 SING N N 7 RYI C05 C19 SING N N 8 RYI C03 S02 SING N N 9 RYI C20 S02 SING N N 10 RYI S02 O01 DOUB N N 11 RYI C08 N09 SING N N 12 RYI C19 N09 SING N N 13 RYI N09 C10 SING N N 14 RYI C10 N18 DOUB Y N 15 RYI C10 C11 SING Y N 16 RYI N18 C17 SING Y N 17 RYI C12 C11 SING Y N 18 RYI C12 C13 DOUB Y N 19 RYI C11 C15 DOUB Y N 20 RYI C13 N14 SING Y N 21 RYI C17 N16 DOUB Y N 22 RYI C15 N16 SING Y N 23 RYI C15 N14 SING Y N 24 RYI C17 H171 SING N N 25 RYI C13 H131 SING N N 26 RYI C12 H121 SING N N 27 RYI C20 H202 SING N N 28 RYI C20 H201 SING N N 29 RYI C19 H191 SING N N 30 RYI C19 H192 SING N N 31 RYI C03 H032 SING N N 32 RYI C03 H031 SING N N 33 RYI C04 H042 SING N N 34 RYI C04 H041 SING N N 35 RYI C06 H062 SING N N 36 RYI C06 H061 SING N N 37 RYI C07 H072 SING N N 38 RYI C07 H071 SING N N 39 RYI C08 H082 SING N N 40 RYI C08 H081 SING N N 41 RYI N14 H141 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RYI SMILES ACDLabs 12.01 "O=S1(=O)CCC2(CCCN(C2)c2ncnc3[NH]ccc32)C1" RYI InChI InChI 1.06 "InChI=1S/C14H18N4O2S/c19-21(20)7-4-14(9-21)3-1-6-18(8-14)13-11-2-5-15-12(11)16-10-17-13/h2,5,10H,1,3-4,6-9H2,(H,15,16,17)/t14-/m1/s1" RYI InChIKey InChI 1.06 CIGPPCNTUJESTR-CQSZACIVSA-N RYI SMILES_CANONICAL CACTVS 3.385 "O=[S]1(=O)CC[C@@]2(CCCN(C2)c3ncnc4[nH]ccc34)C1" RYI SMILES CACTVS 3.385 "O=[S]1(=O)CC[C]2(CCCN(C2)c3ncnc4[nH]ccc34)C1" RYI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)N3CCC[C@]4(C3)CCS(=O)(=O)C4" RYI SMILES "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)N3CCCC4(C3)CCS(=O)(=O)C4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RYI "SYSTEMATIC NAME" ACDLabs 12.01 "(5R)-7-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-2lambda~6~-thia-7-azaspiro[4.5]decane-2,2-dione" RYI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{R})-9-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-2$l^{6}-thia-9-azaspiro[4.5]decane 2,2-dioxide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RYI "Create component" 2022-06-23 RCSB RYI "Initial release" 2022-07-13 RCSB #