data_RYK # _chem_comp.id RYK _chem_comp.name "(5~{R})-5-[(1~{S})-4,5-dimethoxy-1,3-dihydro-2-benzofuran-1-yl]-~{N}-ethyl-4-methoxy-7,8-dihydro-5~{H}-[1,3]dioxolo[4,5-g]isoquinoline-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-03 _chem_comp.pdbx_modified_date 2021-07-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 456.488 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RYK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AU5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RYK C4 C1 C 0 1 Y N N 16.712 67.164 39.403 2.811 0.761 -0.187 C4 RYK 1 RYK C14 C2 C 0 1 N N N 18.684 67.584 44.247 -0.792 2.230 0.287 C14 RYK 2 RYK C5 C3 C 0 1 Y N N 16.083 67.363 40.646 2.169 -0.446 0.080 C5 RYK 3 RYK C6 C4 C 0 1 N N R 16.772 68.171 41.730 0.663 -0.474 -0.005 C6 RYK 4 RYK C11 C5 C 0 1 N N N 18.114 68.487 38.000 1.926 2.111 -1.934 C11 RYK 5 RYK C7 C6 C 0 1 N N N 14.856 67.530 43.309 0.804 -2.747 1.051 C7 RYK 6 RYK C8 C7 C 0 1 N N N 14.062 66.912 42.156 2.284 -2.898 0.703 C8 RYK 7 RYK C9 C8 C 0 1 Y N N 14.824 66.773 40.866 2.908 -1.557 0.420 C9 RYK 8 RYK C10 C9 C 0 1 Y N N 14.194 66.017 39.871 4.292 -1.462 0.507 C10 RYK 9 RYK C12 C10 C 0 1 N N N 15.713 69.860 43.488 -0.766 -2.308 -0.789 C12 RYK 10 RYK C13 C11 C 0 1 N N S 17.992 67.275 42.098 0.073 0.310 1.169 C13 RYK 11 RYK N1 N1 N 0 1 N N N 15.805 68.542 42.813 0.191 -1.861 0.048 N1 RYK 12 RYK C3 C12 C 0 1 Y N N 16.061 66.401 38.414 4.192 0.856 -0.104 C3 RYK 13 RYK C1 C13 C 0 1 N N N 15.550 64.998 36.794 6.283 1.516 0.318 C1 RYK 14 RYK C15 C14 C 0 1 Y N N 18.055 66.285 44.186 -1.957 1.337 0.647 C15 RYK 15 RYK C16 C15 C 0 1 Y N N 17.855 65.339 45.189 -3.326 1.492 0.534 C16 RYK 16 RYK C17 C16 C 0 1 Y N N 17.202 64.139 44.850 -4.175 0.474 0.961 C17 RYK 17 RYK C18 C17 C 0 1 Y N N 16.763 63.905 43.539 -3.644 -0.688 1.496 C18 RYK 18 RYK C19 C18 C 0 1 Y N N 16.978 64.878 42.548 -2.273 -0.837 1.606 C19 RYK 19 RYK C2 C19 C 0 1 Y N N 14.830 65.843 38.657 4.937 -0.265 0.248 C2 RYK 20 RYK C20 C20 C 0 1 Y N N 17.634 66.050 42.893 -1.432 0.171 1.184 C20 RYK 21 RYK C21 C21 C 0 1 N N N 16.483 61.946 45.605 -6.332 -0.464 1.311 C21 RYK 22 RYK C48 C22 C 0 1 N N N 17.782 66.730 47.175 -4.051 2.661 -1.406 C48 RYK 23 RYK C51 C23 C 0 1 N N N 17.599 71.079 42.194 -2.498 -1.912 -2.457 C51 RYK 24 RYK C52 C24 C 0 1 N N N 18.237 72.467 42.344 -3.016 -0.751 -3.308 C52 RYK 25 RYK N49 N2 N 0 1 N N N 16.515 70.962 43.193 -1.384 -1.450 -1.626 N49 RYK 26 RYK O1 O1 O 0 1 N N N 16.455 66.069 37.137 5.046 1.901 -0.310 O1 RYK 27 RYK O2 O2 O 0 1 N N N 14.356 65.134 37.586 6.258 0.077 0.265 O2 RYK 28 RYK O3 O3 O 0 1 N N N 17.950 67.742 39.200 2.079 1.852 -0.537 O3 RYK 29 RYK O4 O4 O 0 1 N N N 18.931 67.964 42.961 0.340 1.718 1.014 O4 RYK 30 RYK O50 O5 O 0 1 N N N 14.857 70.008 44.382 -1.073 -3.484 -0.790 O50 RYK 31 RYK O6 O6 O 0 1 N N N 18.299 65.590 46.488 -3.842 2.635 0.008 O6 RYK 32 RYK O7 O7 O 0 1 N N N 17.027 63.229 45.878 -5.522 0.621 0.853 O7 RYK 33 RYK H1 H1 H 0 1 N N N 19.626 67.522 44.811 -0.602 2.185 -0.785 H1 RYK 34 RYK H2 H2 H 0 1 N N N 18.013 68.307 44.733 -0.999 3.257 0.589 H2 RYK 35 RYK H3 H3 H 0 1 N N N 17.159 69.095 41.277 0.344 -0.018 -0.942 H3 RYK 36 RYK H4 H4 H 0 1 N N N 19.135 68.893 37.957 1.399 3.054 -2.073 H4 RYK 37 RYK H5 H5 H 0 1 N N N 17.944 67.830 37.134 2.909 2.171 -2.401 H5 RYK 38 RYK H6 H6 H 0 1 N N N 17.389 69.314 37.980 1.355 1.304 -2.392 H6 RYK 39 RYK H7 H7 H 0 1 N N N 14.157 68.006 44.013 0.318 -3.722 1.029 H7 RYK 40 RYK H8 H8 H 0 1 N N N 15.414 66.737 43.827 0.702 -2.307 2.044 H8 RYK 41 RYK H9 H9 H 0 1 N N N 13.183 67.546 41.967 2.803 -3.366 1.539 H9 RYK 42 RYK H10 H10 H 0 1 N N N 13.731 65.910 42.467 2.381 -3.531 -0.179 H10 RYK 43 RYK H11 H11 H 0 1 N N N 13.224 65.576 40.050 4.871 -2.331 0.781 H11 RYK 44 RYK H12 H12 H 0 1 N N N 18.493 66.969 41.168 0.492 -0.050 2.109 H12 RYK 45 RYK H13 H13 H 0 1 N N N 15.295 65.057 35.726 7.134 1.905 -0.241 H13 RYK 46 RYK H14 H14 H 0 1 N N N 16.026 64.029 37.005 6.312 1.861 1.352 H14 RYK 47 RYK H15 H15 H 0 1 N N N 16.262 62.981 43.292 -4.301 -1.479 1.828 H15 RYK 48 RYK H16 H16 H 0 1 N N N 16.638 64.716 41.536 -1.860 -1.744 2.024 H16 RYK 49 RYK H17 H17 H 0 1 N N N 16.420 61.368 46.539 -6.089 -1.363 0.745 H17 RYK 50 RYK H18 H18 H 0 1 N N N 15.477 62.058 45.175 -6.140 -0.639 2.370 H18 RYK 51 RYK H19 H19 H 0 1 N N N 17.131 61.418 44.890 -7.384 -0.218 1.168 H19 RYK 52 RYK H20 H20 H 0 1 N N N 18.228 66.787 48.179 -3.101 2.507 -1.917 H20 RYK 53 RYK H21 H21 H 0 1 N N N 18.031 67.641 46.612 -4.747 1.870 -1.685 H21 RYK 54 RYK H22 H22 H 0 1 N N N 16.689 66.640 47.263 -4.465 3.628 -1.694 H22 RYK 55 RYK H23 H23 H 0 1 N N N 17.186 70.966 41.181 -3.300 -2.280 -1.818 H23 RYK 56 RYK H24 H24 H 0 1 N N N 18.355 70.300 42.371 -2.156 -2.716 -3.110 H24 RYK 57 RYK H25 H25 H 0 1 N N N 19.049 72.579 41.610 -3.358 0.053 -2.655 H25 RYK 58 RYK H26 H26 H 0 1 N N N 17.475 73.241 42.170 -2.214 -0.382 -3.947 H26 RYK 59 RYK H27 H27 H 0 1 N N N 18.644 72.575 43.360 -3.845 -1.094 -3.927 H27 RYK 60 RYK H28 H28 H 0 1 N N N 16.332 71.785 43.730 -1.091 -0.527 -1.677 H28 RYK 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RYK C1 O1 SING N N 1 RYK C1 O2 SING N N 2 RYK O1 C3 SING N N 3 RYK O2 C2 SING N N 4 RYK C11 O3 SING N N 5 RYK C3 C2 DOUB Y N 6 RYK C3 C4 SING Y N 7 RYK C2 C10 SING Y N 8 RYK O3 C4 SING N N 9 RYK C4 C5 DOUB Y N 10 RYK C10 C9 DOUB Y N 11 RYK C5 C9 SING Y N 12 RYK C5 C6 SING N N 13 RYK C9 C8 SING N N 14 RYK C6 C13 SING N N 15 RYK C6 N1 SING N N 16 RYK C13 C20 SING N N 17 RYK C13 O4 SING N N 18 RYK C8 C7 SING N N 19 RYK C51 C52 SING N N 20 RYK C51 N49 SING N N 21 RYK C19 C20 DOUB Y N 22 RYK C19 C18 SING Y N 23 RYK N1 C7 SING N N 24 RYK N1 C12 SING N N 25 RYK C20 C15 SING Y N 26 RYK O4 C14 SING N N 27 RYK N49 C12 SING N N 28 RYK C12 O50 DOUB N N 29 RYK C18 C17 DOUB Y N 30 RYK C15 C14 SING N N 31 RYK C15 C16 DOUB Y N 32 RYK C17 C16 SING Y N 33 RYK C17 O7 SING N N 34 RYK C16 O6 SING N N 35 RYK C21 O7 SING N N 36 RYK O6 C48 SING N N 37 RYK C14 H1 SING N N 38 RYK C14 H2 SING N N 39 RYK C6 H3 SING N N 40 RYK C11 H4 SING N N 41 RYK C11 H5 SING N N 42 RYK C11 H6 SING N N 43 RYK C7 H7 SING N N 44 RYK C7 H8 SING N N 45 RYK C8 H9 SING N N 46 RYK C8 H10 SING N N 47 RYK C10 H11 SING N N 48 RYK C13 H12 SING N N 49 RYK C1 H13 SING N N 50 RYK C1 H14 SING N N 51 RYK C18 H15 SING N N 52 RYK C19 H16 SING N N 53 RYK C21 H17 SING N N 54 RYK C21 H18 SING N N 55 RYK C21 H19 SING N N 56 RYK C48 H20 SING N N 57 RYK C48 H21 SING N N 58 RYK C48 H22 SING N N 59 RYK C51 H23 SING N N 60 RYK C51 H24 SING N N 61 RYK C52 H25 SING N N 62 RYK C52 H26 SING N N 63 RYK C52 H27 SING N N 64 RYK N49 H28 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RYK InChI InChI 1.03 "InChI=1S/C24H28N2O7/c1-5-25-24(27)26-9-8-13-10-17-22(33-12-32-17)23(30-4)18(13)19(26)21-14-6-7-16(28-2)20(29-3)15(14)11-31-21/h6-7,10,19,21H,5,8-9,11-12H2,1-4H3,(H,25,27)/t19-,21+/m1/s1" RYK InChIKey InChI 1.03 VMHFTRMCCSRTML-CTNGQTDRSA-N RYK SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)N1CCc2cc3OCOc3c(OC)c2[C@@H]1[C@H]4OCc5c4ccc(OC)c5OC" RYK SMILES CACTVS 3.385 "CCNC(=O)N1CCc2cc3OCOc3c(OC)c2[CH]1[CH]4OCc5c4ccc(OC)c5OC" RYK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)N1CCc2cc3c(c(c2[C@@H]1[C@@H]4c5ccc(c(c5CO4)OC)OC)OC)OCO3" RYK SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)N1CCc2cc3c(c(c2C1C4c5ccc(c(c5CO4)OC)OC)OC)OCO3" # _pdbx_chem_comp_identifier.comp_id RYK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{R})-5-[(1~{S})-4,5-dimethoxy-1,3-dihydro-2-benzofuran-1-yl]-~{N}-ethyl-4-methoxy-7,8-dihydro-5~{H}-[1,3]dioxolo[4,5-g]isoquinoline-6-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RYK "Create component" 2020-11-03 PDBE RYK "Initial release" 2021-07-07 RCSB ##