data_RYO # _chem_comp.id RYO _chem_comp.name bryostatin-1 _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C47 H68 O17" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1S,3S,5Z,7R,8E,11S,12S,13E,15S,17R,21R,23R,25S)-25-(acetyloxy)-1,11,21-trihydroxy-17-[(1R)-1-hydroxyethyl]-5,13-bis(2-methoxy-2-oxoethylidene)-10,10,26,26-tetramethyl-19-oxo-18,27,28,29-tetraoxatetracyclo[21.3.1.1~3,7~.1~11,15~]nonacos-8-en-12-yl (2E,4E)-octa-2,4-dienoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2026-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 905.033 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RYO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T2W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RYO C1 C1 C 0 1 N N N N N N 9.384 -10.353 0.700 0.774 -3.935 -0.021 C1 RYO 1 RYO C2 C2 C 0 1 N N N N N N 10.093 -9.136 0.206 2.040 -4.569 0.491 C2 RYO 2 RYO C3 C3 C 0 1 N N R N N N 9.717 -7.902 1.005 3.057 -4.668 -0.649 C3 RYO 3 RYO C5 C4 C 0 1 N N R N N N 10.731 -6.434 -0.862 4.564 -2.690 -0.409 C5 RYO 4 RYO C7 C5 C 0 1 N N S N N N 11.385 -4.751 -2.584 6.157 -0.872 -1.041 C7 RYO 5 RYO C9 C6 C 0 1 N N S N N N 9.392 -6.207 -2.870 4.346 -0.550 0.648 C9 RYO 6 RYO C11 C7 C 0 1 N N S N N N 7.283 -7.745 -2.905 2.872 1.152 1.723 C11 RYO 7 RYO C13 C8 C 0 1 N N N N N N 5.505 -9.355 -3.589 2.169 3.474 2.180 C13 RYO 8 RYO C14 C9 C 0 1 N N N N N N 4.930 -9.297 -2.245 0.801 3.010 2.600 C14 RYO 9 RYO C15 C10 C 0 1 N N R N N N 6.005 -8.820 -1.248 0.546 1.580 2.116 C15 RYO 10 RYO C17 C11 C 0 1 N N N N N N 5.557 -9.449 1.117 -1.610 0.390 2.215 C17 RYO 11 RYO C18 C12 C 0 1 N N N N N N 4.915 -9.401 2.483 -2.777 -0.115 3.023 C18 RYO 12 RYO C19 C13 C 0 1 N N S N N N 6.055 -9.134 3.499 -3.668 -1.027 2.195 C19 RYO 13 RYO C20 C14 C 0 1 N N S N N N 5.595 -8.865 4.947 -4.345 -0.234 1.070 C20 RYO 14 RYO C21 C15 C 0 1 N N N N N N 6.810 -8.778 5.828 -5.074 -1.202 0.171 C21 RYO 15 RYO C22 C16 C 0 1 N N N N N N 7.778 -9.909 5.721 -4.445 -2.519 -0.196 C22 RYO 16 RYO O1 O1 O 0 1 N N N N N N 9.757 -10.661 1.976 -0.419 -4.397 0.383 O1 RYO 17 RYO C10 C17 C 0 1 N N N N N N 7.933 -6.386 -3.271 3.971 0.116 1.975 C10 RYO 18 RYO C12 C18 C 0 1 N N N N N N 6.306 -8.169 -4.000 3.338 2.521 2.224 C12 RYO 19 RYO C16 C19 C 0 1 N N N N N N 5.367 -8.619 0.116 -0.653 1.029 2.845 C16 RYO 20 RYO C23 C20 C 0 1 N N S N N N 8.090 -10.138 4.242 -3.721 -3.111 1.011 C23 RYO 21 RYO C24 C21 C 0 1 N N N N N N 8.886 -11.445 4.064 -2.839 -4.275 0.563 C24 RYO 22 RYO C25 C22 C 0 1 N N R N N N 9.123 -11.791 2.592 -1.596 -3.731 -0.146 C25 RYO 23 RYO C26 C23 C 0 1 N N R N N N 9.985 -13.032 2.370 -1.704 -4.001 -1.648 C26 RYO 24 RYO C27 C24 C 0 1 N N N N N N 11.417 -12.899 2.890 -1.645 -5.508 -1.901 C27 RYO 25 RYO C28 C25 C 0 1 N N N N N N 9.087 -3.712 -2.545 6.739 -0.544 1.368 C28 RYO 26 RYO C29 C26 C 0 1 N N N N N N 10.043 -4.561 -4.665 5.832 1.362 0.031 C29 RYO 27 RYO C30 C27 C 0 1 N N N N N N 5.432 -10.460 -4.457 2.349 4.727 1.770 C30 RYO 28 RYO C31 C28 C 0 1 N N N N N N 4.679 -11.692 -4.154 1.320 5.742 2.036 C31 RYO 29 RYO C32 C29 C 0 1 N N N N N N 3.848 -8.323 2.571 -2.250 -0.893 4.231 C32 RYO 30 RYO C33 C30 C 0 1 N N N N N N 4.286 -10.780 2.693 -3.600 1.077 3.515 C33 RYO 31 RYO C34 C31 C 0 1 N N N N N N 6.996 -7.667 6.657 -6.279 -0.890 -0.298 C34 RYO 32 RYO C35 C32 C 0 1 N N N N N N 8.126 -7.455 7.575 -6.887 -1.703 -1.361 C35 RYO 33 RYO C36 C33 C 0 1 N N N N N N 13.277 -3.310 -2.881 7.870 -0.563 -2.669 C36 RYO 34 RYO C37 C34 C 0 1 N N N N N N 13.667 -1.863 -3.104 9.286 -0.258 -3.084 C37 RYO 35 RYO C38 C35 C 0 1 N N N N N N 4.456 -13.924 -4.879 0.331 7.894 1.732 C38 RYO 36 RYO C39 C36 C 0 1 N N N N N N 9.195 -5.812 8.853 -8.619 -2.199 -2.928 C39 RYO 37 RYO C4 C37 C 0 1 N N N N N N 10.566 -6.687 0.618 4.423 -4.191 -0.151 C4 RYO 38 RYO C40 C38 C 0 1 N N N N N N 3.686 -9.740 6.052 -3.731 1.631 -0.256 C40 RYO 39 RYO C41 C39 C 0 1 N N N N N N 2.971 -11.034 6.373 -2.800 2.381 -1.019 C41 RYO 40 RYO C42 C40 C 0 1 N N N N N N 1.724 -11.040 6.716 -3.178 3.546 -1.592 C42 RYO 41 RYO C43 C41 C 0 1 N N N N N N 1.047 -12.376 6.921 -2.217 4.320 -2.379 C43 RYO 42 RYO C44 C42 C 0 1 N N N N N N -0.266 -12.469 6.790 -2.590 5.470 -2.944 C44 RYO 43 RYO C45 C43 C 0 1 N N N N N N -0.998 -13.833 7.018 -1.600 6.266 -3.754 C45 RYO 44 RYO C46 C44 C 0 1 N N N N N N -1.739 -14.358 5.765 -2.173 6.522 -5.150 C46 RYO 45 RYO C47 C45 C 0 1 N N N N N N -2.061 -15.860 5.946 -1.168 7.331 -5.973 C47 RYO 46 RYO C6 C46 C 0 1 N N N N N N 11.397 -5.072 -1.111 5.996 -2.382 -0.850 C6 RYO 47 RYO C8 C47 C 0 1 N N N N N N 9.962 -4.796 -3.162 5.769 -0.150 0.252 C8 RYO 48 RYO O10 O2 O 0 1 N N N N N N 4.855 -9.958 5.442 -3.355 0.468 0.316 O10 RYO 49 RYO O11 O3 O 0 1 N N N N N N 9.334 -14.180 2.902 -2.944 -3.484 -2.136 O11 RYO 50 RYO O12 O4 O 0 1 N N N N N N 14.041 -4.227 -2.756 7.032 -0.802 -3.506 O12 RYO 51 RYO O13 O5 O 0 1 N N N N N N 5.000 -12.624 -5.077 1.381 6.940 1.422 O13 RYO 52 RYO O14 O6 O 0 1 N N N N N N 3.962 -11.914 -3.249 0.414 5.500 2.809 O14 RYO 53 RYO O15 O7 O 0 1 N N N N N N 8.144 -6.139 7.949 -8.079 -1.350 -1.881 O15 RYO 54 RYO O16 O8 O 0 1 N N N N N N 8.973 -8.231 7.926 -6.314 -2.693 -1.772 O16 RYO 55 RYO O17 O9 O 0 1 N N N N N N 3.265 -8.658 6.210 -4.870 2.037 -0.117 O17 RYO 56 RYO O2 O10 O 0 1 N N N N N N 8.564 -11.013 0.080 0.833 -3.008 -0.793 O2 RYO 57 RYO O3 O11 O 0 1 N N N N N N 8.321 -7.678 0.885 3.155 -6.026 -1.085 O3 RYO 58 RYO O4 O12 O 0 1 N N N N N N 9.416 -6.456 -1.453 4.272 -1.970 0.791 O4 RYO 59 RYO O5 O13 O 0 1 N N N N N N 11.915 -3.451 -2.796 7.539 -0.570 -1.368 O5 RYO 60 RYO O6 O14 O 0 1 N N N N N N 10.238 -7.106 -3.532 3.436 -0.124 -0.368 O6 RYO 61 RYO O7 O15 O 0 1 N N N N N N 6.618 -7.609 -1.652 1.684 0.767 2.416 O7 RYO 62 RYO O8 O16 O 0 1 N N N N N N 6.909 -10.251 3.474 -2.912 -2.103 1.626 O8 RYO 63 RYO O9 O17 O 0 1 N N N N N N 6.739 -7.937 3.206 -4.685 -1.584 3.039 O9 RYO 64 RYO H2A H1 H 0 1 N N N N N N 11.178 -9.297 0.289 2.453 -3.959 1.295 H2A RYO 65 RYO H2B H2 H 0 1 N N N N N N 9.827 -8.972 -0.849 1.819 -5.567 0.870 H2B RYO 66 RYO H3A H3 H 0 1 N N N N N N 9.940 -8.122 2.059 2.734 -4.042 -1.481 H3A RYO 67 RYO H5 H4 H 0 1 N N N N N N 11.359 -7.225 -1.299 3.868 -2.386 -1.189 H5 RYO 68 RYO H7A H5 H 0 1 N N N N N N 11.997 -5.496 -3.113 5.510 -0.538 -1.852 H7A RYO 69 RYO H11 H6 H 0 1 N N N N N N 8.078 -8.501 -2.830 2.668 1.204 0.655 H11 RYO 70 RYO H14B H8 H 0 0 N N N N N N 4.085 -8.593 -2.238 0.729 3.040 3.687 H14B RYO 71 RYO H14A H9 H 0 0 N N N N N N 4.577 -10.297 -1.953 0.049 3.673 2.172 H14A RYO 72 RYO H15 H10 H 0 1 N N N N N N 6.765 -9.610 -1.162 0.361 1.579 1.045 H15 RYO 73 RYO H17 H11 H 0 1 N N N N N N 6.251 -10.258 0.943 -1.562 0.228 1.151 H17 RYO 74 RYO H20 H12 H 0 1 N N N N N N 5.021 -7.928 4.990 -5.052 0.477 1.497 H20 RYO 75 RYO H22B H14 H 0 0 N N N N N N 7.336 -10.819 6.153 -5.220 -3.210 -0.526 H22B RYO 76 RYO H22A H15 H 0 0 N N N N N N 8.703 -9.659 6.262 -3.730 -2.365 -1.004 H22A RYO 77 RYO H10A H16 H 0 0 N N N N N N 7.868 -6.266 -4.363 3.607 -0.640 2.672 H10A RYO 78 RYO H10B H17 H 0 0 N N N N N N 7.350 -5.593 -2.780 4.847 0.609 2.396 H10B RYO 79 RYO H12B H18 H 0 0 N N N N N N 6.874 -8.419 -4.908 3.699 2.432 3.248 H12B RYO 80 RYO H12A H19 H 0 0 N N N N N N 5.623 -7.333 -4.213 4.137 2.893 1.583 H12A RYO 81 RYO H16 H20 H 0 1 N N N N N N 4.732 -7.759 0.269 -0.727 1.165 3.920 H16 RYO 82 RYO H23 H21 H 0 1 N N N N N N 8.704 -9.301 3.877 -4.449 -3.467 1.740 H23 RYO 83 RYO H24A H22 H 0 0 N N N N N N 8.325 -12.266 4.534 -2.535 -4.857 1.434 H24A RYO 84 RYO H24B H23 H 0 0 N N N N N N 9.861 -11.335 4.562 -3.398 -4.913 -0.122 H24B RYO 85 RYO H25 H24 H 0 1 N N N N N N 8.145 -11.964 2.119 -1.517 -2.658 0.029 H25 RYO 86 RYO H26 H25 H 0 1 N N N N N N 10.061 -13.167 1.281 -0.878 -3.512 -2.165 H26 RYO 87 RYO H27A H26 H 0 0 N N N N N N 11.968 -13.830 2.692 -2.460 -5.998 -1.369 H27A RYO 88 RYO H27C H27 H 0 0 N N N N N N 11.916 -12.062 2.379 -1.741 -5.701 -2.970 H27C RYO 89 RYO H27B H28 H 0 0 N N N N N N 11.397 -12.708 3.973 -0.692 -5.899 -1.546 H27B RYO 90 RYO H28C H29 H 0 0 N N N N N N 9.019 -3.869 -1.458 6.461 -0.031 2.289 H28C RYO 91 RYO H28B H30 H 0 0 N N N N N N 9.530 -2.725 -2.746 6.693 -1.622 1.525 H28B RYO 92 RYO H28A H31 H 0 0 N N N N N N 8.080 -3.759 -2.986 7.752 -0.261 1.086 H28A RYO 93 RYO H29C H32 H 0 0 N N N N N N 10.449 -3.557 -4.858 5.554 1.876 0.951 H29C RYO 94 RYO H29B H33 H 0 0 N N N N N N 10.701 -5.316 -5.119 6.846 1.646 -0.251 H29B RYO 95 RYO H29A H34 H 0 0 N N N N N N 9.037 -4.640 -5.103 5.142 1.642 -0.765 H29A RYO 96 RYO H30 H35 H 0 1 N N N N N N 5.957 -10.403 -5.399 3.251 4.998 1.242 H30 RYO 97 RYO H32C H37 H 0 0 N N N N N N 3.408 -8.323 3.579 -1.636 -0.236 4.847 H32C RYO 98 RYO H32A H38 H 0 0 N N N N N N 4.301 -7.341 2.369 -3.090 -1.261 4.820 H32A RYO 99 RYO H32B H39 H 0 0 N N N N N N 3.062 -8.524 1.828 -1.650 -1.735 3.888 H32B RYO 100 RYO H33C H40 H 0 0 N N N N N N 3.797 -10.814 3.678 -3.966 1.644 2.659 H33C RYO 101 RYO H33A H41 H 0 0 N N N N N N 3.540 -10.966 1.906 -4.446 0.718 4.101 H33A RYO 102 RYO H33B H42 H 0 0 N N N N N N 5.069 -11.551 2.646 -2.975 1.719 4.136 H33B RYO 103 RYO H34 H44 H 0 1 N N N N N N 6.242 -6.895 6.620 -6.811 -0.040 0.102 H34 RYO 104 RYO H37B H45 H 0 0 N N N N N N 14.763 -1.779 -3.134 9.960 -0.993 -2.645 H37B RYO 105 RYO H37A H46 H 0 0 N N N N N N 13.246 -1.513 -4.058 9.362 -0.298 -4.171 H37A RYO 106 RYO H37C H47 H 0 0 N N N N N N 13.275 -1.247 -2.282 9.559 0.739 -2.738 H37C RYO 107 RYO H38C H48 H 0 0 N N N N N N 4.787 -14.588 -5.691 -0.636 7.472 1.456 H38C RYO 108 RYO H38A H49 H 0 0 N N N N N N 4.802 -14.323 -3.914 0.341 8.111 2.800 H38A RYO 109 RYO H38B H50 H 0 0 N N N N N N 3.358 -13.866 -4.879 0.499 8.814 1.173 H38B RYO 110 RYO H39C H51 H 0 0 N N N N N N 9.143 -4.743 9.105 -7.928 -2.221 -3.770 H39C RYO 111 RYO H39B H52 H 0 0 N N N N N N 9.089 -6.410 9.770 -8.755 -3.210 -2.543 H39B RYO 112 RYO H39A H53 H 0 0 N N N N N N 10.165 -6.031 8.382 -9.580 -1.804 -3.257 H39A RYO 113 RYO H4A H54 H 0 1 N N N N N N 11.569 -6.827 1.049 4.508 -4.385 0.918 H4A RYO 114 RYO H4B H55 H 0 1 N N N N N N 10.098 -5.796 1.061 5.210 -4.727 -0.682 H4B RYO 115 RYO H41 H56 H 0 1 N N N N N N 3.511 -11.968 6.315 -1.790 2.021 -1.142 H41 RYO 116 RYO H42 H57 H 0 1 N N N N N N 1.181 -10.116 6.852 -4.189 3.907 -1.468 H42 RYO 117 RYO H43 H58 H 0 1 N N N N N N 1.631 -13.249 7.173 -1.207 3.960 -2.502 H43 RYO 118 RYO H44 H59 H 0 1 N N N N N N -0.839 -11.594 6.523 -3.600 5.830 -2.820 H44 RYO 119 RYO H45B H60 H 0 0 N N N N N N -1.732 -13.702 7.826 -1.408 7.219 -3.260 H45B RYO 120 RYO H45A H61 H 0 0 N N N N N N -0.251 -14.582 7.319 -0.668 5.707 -3.841 H45A RYO 121 RYO H46B H62 H 0 0 N N N N N N -1.101 -14.224 4.879 -2.365 5.570 -5.644 H46B RYO 122 RYO H46A H63 H 0 0 N N N N N N -2.675 -13.796 5.631 -3.105 7.081 -5.063 H46A RYO 123 RYO H47B H64 H 0 0 N N N N N N -2.588 -16.233 5.055 -0.236 6.772 -6.060 H47B RYO 124 RYO H47C H65 H 0 0 N N N N N N -1.125 -16.422 6.080 -1.576 7.513 -6.967 H47C RYO 125 RYO H47A H66 H 0 0 N N N N N N -2.699 -15.994 6.832 -0.976 8.283 -5.479 H47A RYO 126 RYO H6B H67 H 0 1 N N N N N N 12.437 -5.105 -0.754 6.694 -2.728 -0.088 H6B RYO 127 RYO H6A H68 H 0 1 N N N N N N 10.846 -4.292 -0.564 6.204 -2.891 -1.792 H6A RYO 128 RYO H11A H69 H 0 0 N N N N N N 9.877 -14.947 2.760 -2.942 -2.528 -2.282 H11A RYO 129 RYO H3 H70 H 0 1 N N N N N N 8.080 -6.906 1.384 2.323 -6.395 -1.412 H3 RYO 130 RYO H6 H71 H 0 1 N N N N N N 11.135 -6.961 -3.254 2.512 -0.345 -0.186 H6 RYO 131 RYO H9 H72 H 0 1 N N N N N N 7.429 -7.802 3.844 -5.294 -2.178 2.580 H9 RYO 132 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RYO O13 C38 SING N N 1 RYO O13 C31 SING N N 2 RYO C29 C8 SING N N 3 RYO C30 C31 SING N N 4 RYO C30 C13 DOUB N Z 5 RYO C31 O14 DOUB N N 6 RYO C12 C13 SING N N 7 RYO C12 C11 SING N N 8 RYO C13 C14 SING N N 9 RYO O6 C9 SING N N 10 RYO C10 C11 SING N N 11 RYO C10 C9 SING N N 12 RYO C8 C9 SING N N 13 RYO C8 C7 SING N N 14 RYO C8 C28 SING N N 15 RYO C37 C36 SING N N 16 RYO C11 O7 SING N N 17 RYO C36 O5 SING N N 18 RYO C36 O12 DOUB N N 19 RYO C9 O4 SING N N 20 RYO O5 C7 SING N N 21 RYO C7 C6 SING N N 22 RYO C14 C15 SING N N 23 RYO O7 C15 SING N N 24 RYO O4 C5 SING N N 25 RYO C15 C16 SING N N 26 RYO C6 C5 SING N N 27 RYO C5 C4 SING N N 28 RYO O2 C1 DOUB N N 29 RYO C16 C17 DOUB N E 30 RYO C2 C1 SING N N 31 RYO C2 C3 SING N N 32 RYO C4 C3 SING N N 33 RYO C1 O1 SING N N 34 RYO O3 C3 SING N N 35 RYO C17 C18 SING N N 36 RYO O1 C25 SING N N 37 RYO C26 C25 SING N N 38 RYO C26 C27 SING N N 39 RYO C26 O11 SING N N 40 RYO C18 C32 SING N N 41 RYO C18 C33 SING N N 42 RYO C18 C19 SING N N 43 RYO C25 C24 SING N N 44 RYO O9 C19 SING N N 45 RYO O8 C19 SING N N 46 RYO O8 C23 SING N N 47 RYO C19 C20 SING N N 48 RYO C24 C23 SING N N 49 RYO C23 C22 SING N N 50 RYO C20 O10 SING N N 51 RYO C20 C21 SING N N 52 RYO O10 C40 SING N N 53 RYO C22 C21 SING N N 54 RYO C46 C47 SING N N 55 RYO C46 C45 SING N N 56 RYO C21 C34 DOUB N E 57 RYO C40 O17 DOUB N N 58 RYO C40 C41 SING N N 59 RYO C41 C42 DOUB N E 60 RYO C34 C35 SING N N 61 RYO C42 C43 SING N N 62 RYO C44 C43 DOUB N E 63 RYO C44 C45 SING N N 64 RYO C35 O16 DOUB N N 65 RYO C35 O15 SING N N 66 RYO O15 C39 SING N N 67 RYO C2 H2A SING N N 68 RYO C2 H2B SING N N 69 RYO C3 H3A SING N N 70 RYO C5 H5 SING N N 71 RYO C7 H7A SING N N 72 RYO C11 H11 SING N N 73 RYO C14 H14B SING N N 74 RYO C14 H14A SING N N 75 RYO C15 H15 SING N N 76 RYO C17 H17 SING N N 77 RYO C20 H20 SING N N 78 RYO C22 H22B SING N N 79 RYO C22 H22A SING N N 80 RYO C10 H10A SING N N 81 RYO C10 H10B SING N N 82 RYO C12 H12B SING N N 83 RYO C12 H12A SING N N 84 RYO C16 H16 SING N N 85 RYO C23 H23 SING N N 86 RYO C24 H24A SING N N 87 RYO C24 H24B SING N N 88 RYO C25 H25 SING N N 89 RYO C26 H26 SING N N 90 RYO C27 H27A SING N N 91 RYO C27 H27C SING N N 92 RYO C27 H27B SING N N 93 RYO C28 H28C SING N N 94 RYO C28 H28B SING N N 95 RYO C28 H28A SING N N 96 RYO C29 H29C SING N N 97 RYO C29 H29B SING N N 98 RYO C29 H29A SING N N 99 RYO C30 H30 SING N N 100 RYO C32 H32C SING N N 101 RYO C32 H32A SING N N 102 RYO C32 H32B SING N N 103 RYO C33 H33C SING N N 104 RYO C33 H33A SING N N 105 RYO C33 H33B SING N N 106 RYO C34 H34 SING N N 107 RYO C37 H37B SING N N 108 RYO C37 H37A SING N N 109 RYO C37 H37C SING N N 110 RYO C38 H38C SING N N 111 RYO C38 H38A SING N N 112 RYO C38 H38B SING N N 113 RYO C39 H39C SING N N 114 RYO C39 H39B SING N N 115 RYO C39 H39A SING N N 116 RYO C4 H4A SING N N 117 RYO C4 H4B SING N N 118 RYO C41 H41 SING N N 119 RYO C42 H42 SING N N 120 RYO C43 H43 SING N N 121 RYO C44 H44 SING N N 122 RYO C45 H45B SING N N 123 RYO C45 H45A SING N N 124 RYO C46 H46B SING N N 125 RYO C46 H46A SING N N 126 RYO C47 H47B SING N N 127 RYO C47 H47C SING N N 128 RYO C47 H47A SING N N 129 RYO C6 H6B SING N N 130 RYO C6 H6A SING N N 131 RYO O11 H11A SING N N 132 RYO O3 H3 SING N N 133 RYO O6 H6 SING N N 134 RYO O9 H9 SING N N 135 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RYO SMILES ACDLabs 12.01 "O=C(OC)\C=C1\CC2CC3(O)OC(CC(OC(C)=O)C3(C)C)CC(O)CC(=O)OC(CC3C\C(=C/C(=O)OC)C(OC(=O)\C=C\C=C\CCC)C(O)(O3)C(C)(C)C=CC(C1)O2)C(C)O" RYO InChI InChI 1.06 "InChI=1S/C47H68O17/c1-10-11-12-13-14-15-39(51)62-43-31(22-41(53)58-9)21-34-25-37(28(2)48)61-42(54)24-32(50)23-35-26-38(59-29(3)49)45(6,7)46(55,63-35)27-36-19-30(20-40(52)57-8)18-33(60-36)16-17-44(4,5)47(43,56)64-34/h12-17,20,22,28,32-38,43,48,50,55-56H,10-11,18-19,21,23-27H2,1-9H3/b13-12+,15-14+,17-16+,30-20+,31-22+/t28-,32-,33+,34+,35-,36+,37-,38+,43+,46+,47-/m1/s1" RYO InChIKey InChI 1.06 MJQUEDHRCUIRLF-TVIXENOKSA-N RYO SMILES_CANONICAL CACTVS 3.385 "CCC/C=C/C=C/C(=O)O[C@H]1\C(C[C@H]2C[C@@H](OC(=O)C[C@H](O)C[C@@H]3C[C@H](OC(C)=O)C(C)(C)[C@](O)(C[C@@H]4CC(/C[C@@H](O4)\C=C\C(C)(C)[C@]1(O)O2)=C/C(=O)OC)O3)[C@@H](C)O)=C\C(=O)OC" RYO SMILES CACTVS 3.385 "CCCC=CC=CC(=O)O[CH]1C(C[CH]2C[CH](OC(=O)C[CH](O)C[CH]3C[CH](OC(C)=O)C(C)(C)[C](O)(C[CH]4CC(C[CH](O4)C=CC(C)(C)[C]1(O)O2)=CC(=O)OC)O3)[CH](C)O)=CC(=O)OC" RYO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC/C=C/C=C/C(=O)O[C@H]1/C(=C/C(=O)OC)/C[C@H]2C[C@@H](OC(=O)C[C@@H](C[C@@H]3C[C@@H](C([C@@](O3)(C[C@@H]4C/C(=C/C(=O)OC)/C[C@@H](O4)/C=C/C([C@@]1(O2)O)(C)C)O)(C)C)OC(=O)C)O)[C@@H](C)O" RYO SMILES "OpenEye OEToolkits" 2.0.7 "CCCC=CC=CC(=O)OC1C(=CC(=O)OC)CC2CC(OC(=O)CC(CC3CC(C(C(O3)(CC4CC(=CC(=O)OC)CC(O4)C=CC(C1(O2)O)(C)C)O)(C)C)OC(=O)C)O)C(C)O" # _pdbx_chem_comp_identifier.comp_id RYO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1S,3S,5Z,7R,8E,11S,12S,13E,15S,17R,21R,23R,25S)-25-(acetyloxy)-1,11,21-trihydroxy-17-[(1R)-1-hydroxyethyl]-5,13-bis(2-methoxy-2-oxoethylidene)-10,10,26,26-tetramethyl-19-oxo-18,27,28,29-tetraoxatetracyclo[21.3.1.1~3,7~.1~11,15~]nonacos-8-en-12-yl (2E,4E)-octa-2,4-dienoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RYO "Create component" 2023-06-20 RCSB RYO "Initial release" 2026-03-18 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id RYO _pdbx_chem_comp_synonyms.name "(1S,3S,5Z,7R,8E,11S,12S,13E,15S,17R,21R,23R,25S)-25-(acetyloxy)-1,11,21-trihydroxy-17-[(1R)-1-hydroxyethyl]-5,13-bis(2-methoxy-2-oxoethylidene)-10,10,26,26-tetramethyl-19-oxo-18,27,28,29-tetraoxatetracyclo[21.3.1.1~3,7~.1~11,15~]nonacos-8-en-12-yl (2E,4E)-octa-2,4-dienoate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type "systematic name" #