data_RYS
#
_chem_comp.id RYS
_chem_comp.name "6-[(3~{S},4~{R})-3,4-bis(oxidanyl)pyrrolidin-1-yl]-2-[(3~{S})-3-methyl-3-oxidanyl-pyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H19 F3 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-03
_chem_comp.pdbx_modified_date 2020-09-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 372.342
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RYS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6W0N
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RYS N3 N1 N 0 1 N N N -7.584 -1.149 21.691 2.303 0.816 0.786 N3 RYS 1
RYS C4 C1 C 0 1 N N N -5.106 1.668 18.930 -2.520 -2.069 0.360 C4 RYS 2
RYS N2 N2 N 0 1 Y N N -5.956 -0.489 20.228 0.409 -0.387 0.115 N2 RYS 3
RYS C7 C2 C 0 1 Y N N -4.055 -1.899 19.622 -1.682 0.671 -0.225 C7 RYS 4
RYS C6 C3 C 0 1 Y N N -4.812 -0.679 19.563 -0.869 -0.476 -0.216 C6 RYS 5
RYS C9 C4 C 0 1 Y N N -5.822 -2.700 21.126 0.211 1.947 0.458 C9 RYS 6
RYS C13 C5 C 0 1 N N S -9.390 -1.165 23.192 4.534 1.151 -0.024 C13 RYS 7
RYS C8 C6 C 0 1 Y N N -4.638 -2.901 20.424 -1.116 1.906 0.123 C8 RYS 8
RYS C16 C7 C 0 1 N N N -2.780 -2.088 18.991 -3.065 0.580 -0.584 C16 RYS 9
RYS C1 C8 C 0 1 N N N -2.651 2.206 16.140 -1.033 -5.153 -0.999 C1 RYS 10
RYS C2 C9 C 0 1 N N S -3.829 1.654 16.928 -1.156 -4.045 0.049 C2 RYS 11
RYS C3 C10 C 0 1 N N N -4.334 2.604 18.015 -2.631 -3.605 0.194 C3 RYS 12
RYS N1 N3 N 0 1 N N N -4.385 0.394 18.817 -1.409 -1.704 -0.555 N1 RYS 13
RYS C5 C11 C 0 1 N N N -3.450 0.401 17.694 -0.403 -2.780 -0.418 C5 RYS 14
RYS C10 C12 C 0 1 Y N N -6.449 -1.459 21.002 0.960 0.772 0.446 C10 RYS 15
RYS C11 C13 C 0 1 N N N -8.113 0.219 21.698 2.916 -0.535 0.711 C11 RYS 16
RYS C12 C14 C 0 1 N N R -9.523 0.051 22.235 4.430 -0.268 0.572 C12 RYS 17
RYS C14 C15 C 0 1 N N N -8.399 -2.079 22.480 3.074 1.622 -0.196 C14 RYS 18
RYS O1 O1 O 0 1 N N N -10.647 -1.804 23.429 5.195 1.109 -1.291 O1 RYS 19
RYS O2 O2 O 0 1 N N N -10.417 -0.222 21.156 5.023 -1.223 -0.311 O2 RYS 20
RYS C15 C16 C 0 1 N N N -4.028 -4.275 20.513 -1.950 3.161 0.128 C15 RYS 21
RYS F1 F1 F 0 1 N N N -4.843 -5.156 21.111 -1.155 4.248 0.508 F1 RYS 22
RYS F2 F2 F 0 1 N N N -3.729 -4.785 19.322 -2.463 3.385 -1.155 F2 RYS 23
RYS F3 F3 F 0 1 N N N -2.908 -4.293 21.204 -3.006 3.016 1.034 F3 RYS 24
RYS N4 N4 N 0 1 N N N -1.760 -2.191 18.500 -4.162 0.508 -0.869 N4 RYS 25
RYS O3 O3 O 0 1 N N N -4.883 1.319 16.014 -0.643 -4.492 1.305 O3 RYS 26
RYS H1 H1 H 0 1 N N N -5.093 2.035 19.967 -3.446 -1.581 0.054 H1 RYS 27
RYS H2 H2 H 0 1 N N N -6.147 1.560 18.592 -2.272 -1.810 1.389 H2 RYS 28
RYS H3 H3 H 0 1 N N N -6.242 -3.478 21.746 0.674 2.884 0.731 H3 RYS 29
RYS H4 H4 H 0 1 N N N -8.948 -0.823 24.139 5.069 1.810 0.660 H4 RYS 30
RYS H5 H5 H 0 1 N N N -1.836 2.466 16.832 0.019 -5.399 -1.146 H5 RYS 31
RYS H6 H6 H 0 1 N N N -2.298 1.446 15.428 -1.569 -6.038 -0.656 H6 RYS 32
RYS H7 H7 H 0 1 N N N -2.967 3.105 15.590 -1.461 -4.812 -1.941 H7 RYS 33
RYS H8 H8 H 0 1 N N N -3.498 3.081 18.547 -3.082 -4.057 1.078 H8 RYS 34
RYS H9 H9 H 0 1 N N N -4.990 3.379 17.593 -3.199 -3.857 -0.701 H9 RYS 35
RYS H10 H10 H 0 1 N N N -3.578 -0.496 17.070 0.344 -2.499 0.323 H10 RYS 36
RYS H11 H11 H 0 1 N N N -2.410 0.456 18.048 0.075 -2.967 -1.380 H11 RYS 37
RYS H12 H12 H 0 1 N N N -7.516 0.868 22.356 2.710 -1.097 1.622 H12 RYS 38
RYS H13 H13 H 0 1 N N N -8.127 0.640 20.682 2.543 -1.073 -0.161 H13 RYS 39
RYS H14 H14 H 0 1 N N N -9.827 0.943 22.802 4.912 -0.305 1.549 H14 RYS 40
RYS H15 H15 H 0 1 N N N -8.922 -2.794 21.828 2.727 1.421 -1.209 H15 RYS 41
RYS H16 H16 H 0 1 N N N -7.779 -2.628 23.204 2.988 2.684 0.033 H16 RYS 42
RYS H17 H17 H 0 1 N N N -10.523 -2.540 24.017 5.270 1.971 -1.723 H17 RYS 43
RYS H18 H18 H 0 1 N N N -11.299 -0.327 21.494 4.948 -2.138 -0.009 H18 RYS 44
RYS H19 H19 H 0 1 N N N -5.624 0.973 16.497 -1.092 -5.272 1.659 H19 RYS 45
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RYS O3 C2 SING N N 1
RYS C1 C2 SING N N 2
RYS C2 C5 SING N N 3
RYS C2 C3 SING N N 4
RYS C5 N1 SING N N 5
RYS C3 C4 SING N N 6
RYS N4 C16 TRIP N N 7
RYS N1 C4 SING N N 8
RYS N1 C6 SING N N 9
RYS C16 C7 SING N N 10
RYS F2 C15 SING N N 11
RYS C6 C7 DOUB Y N 12
RYS C6 N2 SING Y N 13
RYS C7 C8 SING Y N 14
RYS N2 C10 DOUB Y N 15
RYS C8 C15 SING N N 16
RYS C8 C9 DOUB Y N 17
RYS C15 F1 SING N N 18
RYS C15 F3 SING N N 19
RYS C10 C9 SING Y N 20
RYS C10 N3 SING N N 21
RYS O2 C12 SING N N 22
RYS N3 C11 SING N N 23
RYS N3 C14 SING N N 24
RYS C11 C12 SING N N 25
RYS C12 C13 SING N N 26
RYS C14 C13 SING N N 27
RYS C13 O1 SING N N 28
RYS C4 H1 SING N N 29
RYS C4 H2 SING N N 30
RYS C9 H3 SING N N 31
RYS C13 H4 SING N N 32
RYS C1 H5 SING N N 33
RYS C1 H6 SING N N 34
RYS C1 H7 SING N N 35
RYS C3 H8 SING N N 36
RYS C3 H9 SING N N 37
RYS C5 H10 SING N N 38
RYS C5 H11 SING N N 39
RYS C11 H12 SING N N 40
RYS C11 H13 SING N N 41
RYS C12 H14 SING N N 42
RYS C14 H15 SING N N 43
RYS C14 H16 SING N N 44
RYS O1 H17 SING N N 45
RYS O2 H18 SING N N 46
RYS O3 H19 SING N N 47
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RYS InChI InChI 1.03 "InChI=1S/C16H19F3N4O3/c1-15(26)2-3-22(8-15)14-9(5-20)10(16(17,18)19)4-13(21-14)23-6-11(24)12(25)7-23/h4,11-12,24-26H,2-3,6-8H2,1H3/t11-,12+,15-/m0/s1"
RYS InChIKey InChI 1.03 FAXXYODRCHXHTQ-ZOWXZIJZSA-N
RYS SMILES_CANONICAL CACTVS 3.385 "C[C@]1(O)CCN(C1)c2nc(cc(c2C#N)C(F)(F)F)N3C[C@H](O)[C@H](O)C3"
RYS SMILES CACTVS 3.385 "C[C]1(O)CCN(C1)c2nc(cc(c2C#N)C(F)(F)F)N3C[CH](O)[CH](O)C3"
RYS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]1(CCN(C1)c2c(c(cc(n2)N3C[C@H]([C@H](C3)O)O)C(F)(F)F)C#N)O"
RYS SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(C1)c2c(c(cc(n2)N3CC(C(C3)O)O)C(F)(F)F)C#N)O"
#
_pdbx_chem_comp_identifier.comp_id RYS
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "6-[(3~{S},4~{R})-3,4-bis(oxidanyl)pyrrolidin-1-yl]-2-[(3~{S})-3-methyl-3-oxidanyl-pyrrolidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RYS "Create component" 2020-03-03 RCSB
RYS "Initial release" 2020-09-23 RCSB
##