data_RZ9 # _chem_comp.id RZ9 _chem_comp.name "5-[(3S)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-1,3,4-oxadiazol-2(3H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-23 _chem_comp.pdbx_modified_date 2022-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 286.289 _chem_comp.one_letter_code ? _chem_comp.three_letter_code RZ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SOU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal RZ9 C02 C1 C 0 1 N N N -47.320 -33.465 0.298 -5.139 -0.456 -0.306 C02 RZ9 1 RZ9 C05 C2 C 0 1 N N N -45.580 -31.985 0.381 -3.022 0.068 -0.117 C05 RZ9 2 RZ9 C06 C3 C 0 1 N N S -44.564 -30.856 0.851 -1.712 0.788 -0.305 C06 RZ9 3 RZ9 C07 C4 C 0 1 N N N -44.824 -29.598 0.172 -1.632 1.967 0.669 C07 RZ9 4 RZ9 C08 C5 C 0 1 N N N -45.950 -28.821 0.650 -0.273 2.656 0.513 C08 RZ9 5 RZ9 C09 C6 C 0 1 N N N -46.327 -29.123 2.094 0.841 1.638 0.767 C09 RZ9 6 RZ9 C11 C7 C 0 1 Y N N -45.220 -29.411 4.403 1.789 -0.342 -0.073 C11 RZ9 7 RZ9 C12 C8 C 0 1 Y N N -46.463 -29.214 5.055 3.109 0.116 -0.200 C12 RZ9 8 RZ9 C13 C9 C 0 1 Y N N -47.813 -29.015 4.676 3.737 1.413 -0.444 C13 RZ9 9 RZ9 C14 C10 C 0 1 Y N N -48.552 -28.869 5.834 5.064 1.207 -0.457 C14 RZ9 10 RZ9 C16 C11 C 0 1 Y N N -46.465 -29.176 6.422 4.160 -0.812 -0.079 C16 RZ9 11 RZ9 C18 C12 C 0 1 Y N N -44.168 -29.527 6.450 2.605 -2.474 0.262 C18 RZ9 12 RZ9 C20 C13 C 0 1 N N N -44.557 -30.764 2.396 -0.555 -0.176 -0.027 C20 RZ9 13 RZ9 N03 N1 N 0 1 N N N -46.530 -33.638 -0.901 -4.558 -1.331 0.543 N03 RZ9 14 RZ9 N04 N2 N 0 1 N N N -45.469 -32.740 -0.848 -3.207 -0.964 0.638 N04 RZ9 15 RZ9 N10 N3 N 0 1 N N N -45.130 -29.475 2.962 0.722 0.530 -0.189 N10 RZ9 16 RZ9 N15 N4 N 0 1 Y N N -47.731 -28.969 6.866 5.329 -0.121 -0.240 N15 RZ9 17 RZ9 N17 N5 N 0 1 Y N N -45.300 -29.337 7.096 3.858 -2.089 0.150 N17 RZ9 18 RZ9 N19 N6 N 0 1 Y N N -44.119 -29.567 5.127 1.589 -1.637 0.155 N19 RZ9 19 RZ9 O01 O1 O 0 1 N N N -48.300 -34.070 0.578 -6.308 -0.446 -0.643 O01 RZ9 20 RZ9 O21 O2 O 0 1 N N N -46.718 -32.449 1.076 -4.188 0.405 -0.703 O21 RZ9 21 RZ9 H061 H1 H 0 0 N N N -43.563 -31.199 0.551 -1.641 1.155 -1.329 H061 RZ9 22 RZ9 H072 H2 H 0 0 N N N -45.001 -29.823 -0.890 -2.428 2.677 0.446 H072 RZ9 23 RZ9 H071 H3 H 0 0 N N N -43.923 -28.974 0.269 -1.742 1.604 1.691 H071 RZ9 24 RZ9 H082 H4 H 0 0 N N N -45.695 -27.754 0.573 -0.180 3.053 -0.498 H082 RZ9 25 RZ9 H081 H5 H 0 0 N N N -46.819 -29.037 0.011 -0.194 3.470 1.234 H081 RZ9 26 RZ9 H091 H6 H 0 0 N N N -46.820 -28.236 2.520 1.810 2.122 0.643 H091 RZ9 27 RZ9 H092 H7 H 0 0 N N N -47.027 -29.971 2.103 0.756 1.252 1.783 H092 RZ9 28 RZ9 H131 H8 H 0 0 N N N -48.195 -28.983 3.666 3.231 2.356 -0.587 H131 RZ9 29 RZ9 H141 H9 H 0 0 N N N -49.618 -28.702 5.887 5.810 1.971 -0.616 H141 RZ9 30 RZ9 H181 H10 H 0 0 N N N -43.256 -29.654 7.014 2.399 -3.517 0.448 H181 RZ9 31 RZ9 H202 H11 H 0 0 N N N -45.148 -31.603 2.791 -0.634 -0.554 0.992 H202 RZ9 32 RZ9 H201 H12 H 0 0 N N N -43.516 -30.855 2.739 -0.601 -1.010 -0.728 H201 RZ9 33 RZ9 H031 H13 H 0 0 N N N -46.714 -34.288 -1.638 -4.990 -2.070 0.998 H031 RZ9 34 RZ9 H151 H14 H 0 0 N N N -48.001 -28.902 7.826 6.216 -0.512 -0.206 H151 RZ9 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal RZ9 N03 N04 SING N N 1 RZ9 N03 C02 SING N N 2 RZ9 N04 C05 DOUB N N 3 RZ9 C07 C08 SING N N 4 RZ9 C07 C06 SING N N 5 RZ9 C02 O01 DOUB N N 6 RZ9 C02 O21 SING N N 7 RZ9 C05 C06 SING N N 8 RZ9 C05 O21 SING N N 9 RZ9 C08 C09 SING N N 10 RZ9 C06 C20 SING N N 11 RZ9 C09 N10 SING N N 12 RZ9 C20 N10 SING N N 13 RZ9 N10 C11 SING N N 14 RZ9 C11 C12 DOUB Y N 15 RZ9 C11 N19 SING Y N 16 RZ9 C13 C12 SING Y N 17 RZ9 C13 C14 DOUB Y N 18 RZ9 C12 C16 SING Y N 19 RZ9 N19 C18 DOUB Y N 20 RZ9 C14 N15 SING Y N 21 RZ9 C16 N15 SING Y N 22 RZ9 C16 N17 DOUB Y N 23 RZ9 C18 N17 SING Y N 24 RZ9 C06 H061 SING N N 25 RZ9 C07 H072 SING N N 26 RZ9 C07 H071 SING N N 27 RZ9 C08 H082 SING N N 28 RZ9 C08 H081 SING N N 29 RZ9 C09 H091 SING N N 30 RZ9 C09 H092 SING N N 31 RZ9 C13 H131 SING N N 32 RZ9 C14 H141 SING N N 33 RZ9 C18 H181 SING N N 34 RZ9 C20 H202 SING N N 35 RZ9 C20 H201 SING N N 36 RZ9 N03 H031 SING N N 37 RZ9 N15 H151 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor RZ9 SMILES ACDLabs 12.01 "O=C1NN=C(O1)C1CN(CCC1)c1ncnc2[NH]ccc21" RZ9 InChI InChI 1.06 "InChI=1S/C13H14N6O2/c20-13-18-17-12(21-13)8-2-1-5-19(6-8)11-9-3-4-14-10(9)15-7-16-11/h3-4,7-8H,1-2,5-6H2,(H,18,20)(H,14,15,16)/t8-/m0/s1" RZ9 InChIKey InChI 1.06 FSJZPCQWTVULBE-QMMMGPOBSA-N RZ9 SMILES_CANONICAL CACTVS 3.385 "O=C1NN=C(O1)[C@H]2CCCN(C2)c3ncnc4[nH]ccc34" RZ9 SMILES CACTVS 3.385 "O=C1NN=C(O1)[CH]2CCCN(C2)c3ncnc4[nH]ccc34" RZ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)N3CCC[C@@H](C3)C4=NNC(=O)O4" RZ9 SMILES "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)N3CCCC(C3)C4=NNC(=O)O4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RZ9 "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(3S)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-1,3,4-oxadiazol-2(3H)-one" RZ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(3~{S})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]-3~{H}-1,3,4-oxadiazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site RZ9 "Create component" 2022-06-23 RCSB RZ9 "Initial release" 2022-07-13 RCSB #