data_RZP
#
_chem_comp.id RZP
_chem_comp.name "(2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H21 N O12 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-03
_chem_comp.pdbx_modified_date 2020-08-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 433.242
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RZP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6VZU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RZP C5 C1 C 0 1 N N R 11.822 -17.048 75.905 -1.978 -1.013 -0.517 C5 RZP 1
RZP C21 C2 C 0 1 N N N 11.168 -13.047 81.968 5.885 -0.280 -0.369 C21 RZP 2
RZP C20 C3 C 0 1 N N N 12.317 -13.939 81.518 4.601 0.255 0.211 C20 RZP 3
RZP C19 C4 C 0 1 N N N 11.748 -14.906 80.478 3.416 -0.285 -0.592 C19 RZP 4
RZP C9 C5 C 0 1 N N N 12.595 -16.718 74.631 -1.643 -2.505 -0.564 C9 RZP 5
RZP C14 C6 C 0 1 N N N 12.056 -16.778 78.924 0.922 -0.377 -0.725 C14 RZP 6
RZP C15 C7 C 0 1 N N S 12.757 -15.933 79.989 2.112 0.258 -0.003 C15 RZP 7
RZP C16 C8 C 0 1 N N N 13.191 -16.745 81.182 2.066 1.754 -0.179 C16 RZP 8
RZP C11 C9 C 0 1 N N N 12.795 -17.179 72.146 -1.311 -4.540 0.815 C11 RZP 9
RZP C10 C10 C 0 1 N N N 12.099 -17.570 73.441 -1.554 -3.053 0.862 C10 RZP 10
RZP C1 C11 C 0 1 N N N 9.451 -17.492 76.138 -3.240 0.293 -2.141 C1 RZP 11
RZP C3 C12 C 0 1 N N N 8.018 -17.131 75.814 -3.519 0.726 -3.558 C3 RZP 12
RZP N4 N1 N 0 1 N N N 10.409 -16.678 75.711 -2.196 -0.518 -1.878 N4 RZP 13
RZP O12 O1 O 0 1 N N N 12.627 -16.025 71.685 -1.197 -5.238 1.955 O12 RZP 14
RZP O13 O2 O 0 1 N N N 13.526 -18.024 71.558 -1.218 -5.103 -0.250 O13 RZP 15
RZP O17 O3 O 0 1 N N N 14.267 -16.434 81.766 2.672 2.554 0.712 O17 RZP 16
RZP O18 O4 O 0 1 N N N 12.452 -17.681 81.572 1.483 2.234 -1.122 O18 RZP 17
RZP O2 O5 O 0 1 N N N 9.736 -18.477 76.788 -3.953 0.675 -1.238 O2 RZP 18
RZP O22 O6 O 0 1 N N N 10.723 -12.170 81.194 5.855 -1.017 -1.326 O22 RZP 19
RZP O23 O7 O 0 1 N N N 10.698 -13.234 83.107 7.063 0.062 0.178 O23 RZP 20
RZP O25 O8 O 0 1 N N N 16.410 -16.716 77.819 -1.546 2.534 2.599 O25 RZP 21
RZP O26 O9 O 0 1 N N N 15.206 -18.059 76.034 -3.336 1.704 1.025 O26 RZP 22
RZP O27 O10 O 0 1 N N N 14.669 -18.313 78.461 -2.118 3.818 0.377 O27 RZP 23
RZP O7 O11 O 0 1 N N N 14.120 -16.126 77.210 -0.938 1.470 0.273 O7 RZP 24
RZP O8 O12 O 0 1 N N N 12.085 -14.698 77.202 -0.390 -0.587 1.630 O8 RZP 25
RZP P24 P1 P 0 1 N N N 15.133 -17.394 77.384 -2.014 2.367 1.068 P24 RZP 26
RZP P6 P2 P 0 1 N N R 12.513 -16.102 77.286 -0.596 -0.103 0.247 P6 RZP 27
RZP H1 H1 H 0 1 N N N 11.926 -18.114 76.156 -2.882 -0.863 0.074 H1 RZP 28
RZP H2 H2 H 0 1 N N N 12.719 -14.499 82.375 4.512 -0.064 1.250 H2 RZP 29
RZP H3 H3 H 0 1 N N N 13.116 -13.330 81.071 4.607 1.344 0.164 H3 RZP 30
RZP H4 H4 H 0 1 N N N 11.399 -14.322 79.614 3.505 0.034 -1.630 H4 RZP 31
RZP H5 H5 H 0 1 N N N 10.898 -15.440 80.927 3.410 -1.373 -0.544 H5 RZP 32
RZP H6 H6 H 0 1 N N N 13.663 -16.920 74.797 -2.423 -3.036 -1.109 H6 RZP 33
RZP H7 H7 H 0 1 N N N 12.456 -15.653 74.393 -0.686 -2.647 -1.067 H7 RZP 34
RZP H8 H8 H 0 1 N N N 10.966 -16.724 79.061 0.811 0.076 -1.710 H8 RZP 35
RZP H9 H9 H 0 1 N N N 12.384 -17.825 79.002 1.094 -1.448 -0.835 H9 RZP 36
RZP H10 H10 H 0 1 N N N 13.624 -15.422 79.546 2.064 0.016 1.059 H10 RZP 37
RZP H11 H11 H 0 1 N N N 11.015 -17.422 73.323 -0.732 -2.567 1.388 H11 RZP 38
RZP H12 H12 H 0 1 N N N 12.304 -18.630 73.651 -2.489 -2.855 1.386 H12 RZP 39
RZP H13 H13 H 0 1 N N N 7.343 -17.881 76.251 -4.395 1.374 -3.573 H13 RZP 40
RZP H14 H14 H 0 1 N N N 7.786 -16.140 76.232 -2.658 1.268 -3.949 H14 RZP 41
RZP H15 H15 H 0 1 N N N 7.883 -17.109 74.722 -3.706 -0.153 -4.176 H15 RZP 42
RZP H16 H16 H 0 1 N N N 10.173 -15.818 75.260 -1.590 -0.775 -2.590 H16 RZP 43
RZP H17 H17 H 0 1 N N N 13.119 -15.931 70.878 -1.042 -6.189 1.874 H17 RZP 44
RZP H18 H18 H 0 1 N N N 14.401 -17.009 82.511 2.615 3.507 0.557 H18 RZP 45
RZP H19 H19 H 0 1 N N N 9.987 -12.623 83.261 7.859 -0.306 -0.229 H19 RZP 46
RZP H20 H20 H 0 1 N N N 17.072 -16.824 77.146 -0.723 3.029 2.708 H20 RZP 47
RZP H21 H21 H 0 1 N N N 14.499 -19.172 78.093 -2.749 4.412 0.805 H21 RZP 48
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RZP O13 C11 DOUB N N 1
RZP O12 C11 SING N N 2
RZP C11 C10 SING N N 3
RZP C10 C9 SING N N 4
RZP C9 C5 SING N N 5
RZP N4 C5 SING N N 6
RZP N4 C1 SING N N 7
RZP C3 C1 SING N N 8
RZP C5 P6 SING N N 9
RZP O26 P24 DOUB N N 10
RZP C1 O2 DOUB N N 11
RZP O8 P6 DOUB N N 12
RZP O7 P6 SING N N 13
RZP O7 P24 SING N N 14
RZP P6 C14 SING N N 15
RZP P24 O25 SING N N 16
RZP P24 O27 SING N N 17
RZP C14 C15 SING N N 18
RZP C15 C19 SING N N 19
RZP C15 C16 SING N N 20
RZP C19 C20 SING N N 21
RZP C16 O18 DOUB N N 22
RZP C16 O17 SING N N 23
RZP O22 C21 DOUB N N 24
RZP C20 C21 SING N N 25
RZP C21 O23 SING N N 26
RZP C5 H1 SING N N 27
RZP C20 H2 SING N N 28
RZP C20 H3 SING N N 29
RZP C19 H4 SING N N 30
RZP C19 H5 SING N N 31
RZP C9 H6 SING N N 32
RZP C9 H7 SING N N 33
RZP C14 H8 SING N N 34
RZP C14 H9 SING N N 35
RZP C15 H10 SING N N 36
RZP C10 H11 SING N N 37
RZP C10 H12 SING N N 38
RZP C3 H13 SING N N 39
RZP C3 H14 SING N N 40
RZP C3 H15 SING N N 41
RZP N4 H16 SING N N 42
RZP O12 H17 SING N N 43
RZP O17 H18 SING N N 44
RZP O23 H19 SING N N 45
RZP O25 H20 SING N N 46
RZP O27 H21 SING N N 47
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RZP InChI InChI 1.03 "InChI=1S/C12H21NO12P2/c1-7(14)13-9(3-5-11(17)18)26(21,25-27(22,23)24)6-8(12(19)20)2-4-10(15)16/h8-9H,2-6H2,1H3,(H,13,14)(H,15,16)(H,17,18)(H,19,20)(H2,22,23,24)/t8-,9-,26-/m1/s1"
RZP InChIKey InChI 1.03 UGEFVXZLVYNKBK-IFMBPYNJSA-N
RZP SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](CCC(O)=O)[P@@](=O)(C[C@@H](CCC(O)=O)C(O)=O)O[P](O)(O)=O"
RZP SMILES CACTVS 3.385 "CC(=O)N[CH](CCC(O)=O)[P](=O)(C[CH](CCC(O)=O)C(O)=O)O[P](O)(O)=O"
RZP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CCC(=O)O)[P@@](=O)(C[C@@H](CCC(=O)O)C(=O)O)OP(=O)(O)O"
RZP SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CCC(=O)O)P(=O)(CC(CCC(=O)O)C(=O)O)OP(=O)(O)O"
#
_pdbx_chem_comp_identifier.comp_id RZP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RZP "Create component" 2020-03-03 RCSB
RZP "Initial release" 2020-08-12 RCSB
##