data_RZV
#
_chem_comp.id RZV
_chem_comp.name "(2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-oxidanyl-phosphoryl]methyl]pentanedioic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H20 N O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-03
_chem_comp.pdbx_modified_date 2020-08-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 353.262
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RZV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6VZU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RZV C5 C1 C 0 1 N N R 0.664 7.221 6.219 -2.122 -0.975 -0.214 C5 RZV 1
RZV C1 C2 C 0 1 N N N 1.362 8.156 4.001 -1.352 -3.278 -0.414 C1 RZV 2
RZV C10 C3 C 0 1 N N N 0.222 4.729 5.872 -3.791 0.885 -0.250 C10 RZV 3
RZV C11 C4 C 0 1 N N N 1.011 3.456 5.594 -5.098 1.376 0.317 C11 RZV 4
RZV C14 C5 C 0 1 N N N -0.166 7.442 9.134 0.808 -0.463 -0.339 C14 RZV 5
RZV C15 C6 C 0 1 N N S -0.146 8.191 10.483 1.929 0.475 0.114 C15 RZV 6
RZV C16 C7 C 0 1 N N N 1.256 8.174 11.079 1.955 1.692 -0.774 C16 RZV 7
RZV C19 C8 C 0 1 N N N -1.255 7.502 11.318 3.271 -0.253 0.021 C19 RZV 8
RZV C20 C9 C 0 1 N N N -1.206 7.553 12.850 4.376 0.640 0.590 C20 RZV 9
RZV C21 C10 C 0 1 N N N -2.120 6.492 13.462 5.698 -0.077 0.499 C21 RZV 10
RZV C3 C11 C 0 1 N N N 0.298 7.331 3.334 -1.124 -4.649 0.168 C3 RZV 11
RZV C9 C12 C 0 1 N N N 1.052 5.789 6.609 -3.449 -0.475 0.362 C9 RZV 12
RZV N4 N1 N 0 1 N N N 1.627 7.791 5.271 -1.795 -2.277 0.372 N4 RZV 13
RZV O12 O1 O 0 1 N N N 2.030 3.227 6.284 -5.599 2.557 -0.079 O12 RZV 14
RZV O13 O2 O 0 1 N N N 0.615 2.664 4.692 -5.694 0.708 1.127 O13 RZV 15
RZV O17 O3 O 0 1 N N N 2.179 7.683 10.403 1.158 1.799 -1.677 O17 RZV 16
RZV O18 O4 O 0 1 N N N 1.523 8.646 12.207 2.862 2.658 -0.563 O18 RZV 17
RZV O2 O5 O 0 1 N N N 1.944 9.082 3.399 -1.138 -3.075 -1.591 O2 RZV 18
RZV O22 O6 O 0 1 N N N -2.355 6.543 14.691 6.817 0.519 0.942 O22 RZV 19
RZV O23 O7 O 0 1 N N N -2.617 5.586 12.742 5.752 -1.188 0.027 O23 RZV 20
RZV O7 O8 O 0 1 N N N 1.978 8.708 8.052 -1.076 1.600 -0.600 O7 RZV 21
RZV O8 O9 O 0 1 N N N -0.200 9.536 7.369 -0.783 0.471 1.638 O8 RZV 22
RZV P6 P1 P 0 1 N N N 0.582 8.286 7.704 -0.802 0.219 0.180 P6 RZV 23
RZV H1 H1 H 0 1 N N N -0.347 7.221 5.785 -2.210 -1.075 -1.296 H1 RZV 24
RZV H2 H2 H 0 1 N N N -0.116 5.150 4.914 -3.879 0.784 -1.332 H2 RZV 25
RZV H3 H3 H 0 1 N N N -0.652 4.474 6.489 -3.001 1.598 -0.015 H3 RZV 26
RZV H4 H4 H 0 1 N N N -1.218 7.237 8.885 0.829 -0.557 -1.425 H4 RZV 27
RZV H5 H5 H 0 1 N N N 0.370 6.492 9.275 0.950 -1.444 0.114 H5 RZV 28
RZV H6 H6 H 0 1 N N N -0.442 9.236 10.307 1.752 0.781 1.145 H6 RZV 29
RZV H7 H7 H 0 1 N N N -2.209 7.958 11.016 3.222 -1.180 0.593 H7 RZV 30
RZV H8 H8 H 0 1 N N N -1.251 6.439 11.036 3.490 -0.481 -1.022 H8 RZV 31
RZV H9 H9 H 0 1 N N N -0.173 7.374 13.183 4.425 1.567 0.018 H9 RZV 32
RZV H10 H10 H 0 1 N N N -1.533 8.548 13.188 4.157 0.868 1.633 H10 RZV 33
RZV H11 H11 H 0 1 N N N 0.154 7.682 2.302 -2.039 -5.235 0.087 H11 RZV 34
RZV H12 H12 H 0 1 N N N 0.606 6.275 3.322 -0.324 -5.147 -0.380 H12 RZV 35
RZV H13 H13 H 0 1 N N N -0.646 7.431 3.890 -0.843 -4.556 1.217 H13 RZV 36
RZV H14 H14 H 0 1 N N N 0.900 5.665 7.691 -4.239 -1.189 0.126 H14 RZV 37
RZV H15 H15 H 0 1 N N N 2.114 5.634 6.368 -3.361 -0.375 1.444 H15 RZV 38
RZV H16 H16 H 0 1 N N N 2.564 7.920 5.596 -1.897 -2.418 1.326 H16 RZV 39
RZV H17 H17 H 0 1 N N N 2.417 2.402 6.015 -6.440 2.830 0.313 H17 RZV 40
RZV H18 H18 H 0 1 N N N 2.452 8.548 12.380 2.840 3.420 -1.158 H18 RZV 41
RZV H19 H19 H 0 1 N N N -2.928 5.826 14.934 7.641 0.019 0.862 H19 RZV 42
RZV H20 H20 H 0 1 N N N 2.050 9.653 7.983 -1.101 1.510 -1.562 H20 RZV 43
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RZV C3 C1 SING N N 1
RZV O2 C1 DOUB N N 2
RZV C1 N4 SING N N 3
RZV O13 C11 DOUB N N 4
RZV N4 C5 SING N N 5
RZV C11 C10 SING N N 6
RZV C11 O12 SING N N 7
RZV C10 C9 SING N N 8
RZV C5 C9 SING N N 9
RZV C5 P6 SING N N 10
RZV O8 P6 DOUB N N 11
RZV P6 O7 SING N N 12
RZV P6 C14 SING N N 13
RZV C14 C15 SING N N 14
RZV O17 C16 DOUB N N 15
RZV C15 C16 SING N N 16
RZV C15 C19 SING N N 17
RZV C16 O18 SING N N 18
RZV C19 C20 SING N N 19
RZV O23 C21 DOUB N N 20
RZV C20 C21 SING N N 21
RZV C21 O22 SING N N 22
RZV C5 H1 SING N N 23
RZV C10 H2 SING N N 24
RZV C10 H3 SING N N 25
RZV C14 H4 SING N N 26
RZV C14 H5 SING N N 27
RZV C15 H6 SING N N 28
RZV C19 H7 SING N N 29
RZV C19 H8 SING N N 30
RZV C20 H9 SING N N 31
RZV C20 H10 SING N N 32
RZV C3 H11 SING N N 33
RZV C3 H12 SING N N 34
RZV C3 H13 SING N N 35
RZV C9 H14 SING N N 36
RZV C9 H15 SING N N 37
RZV N4 H16 SING N N 38
RZV O12 H17 SING N N 39
RZV O18 H18 SING N N 40
RZV O22 H19 SING N N 41
RZV O7 H20 SING N N 42
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RZV InChI InChI 1.03 "InChI=1S/C12H20NO9P/c1-7(14)13-9(3-5-11(17)18)23(21,22)6-8(12(19)20)2-4-10(15)16/h8-9H,2-6H2,1H3,(H,13,14)(H,15,16)(H,17,18)(H,19,20)(H,21,22)/t8-,9-/m1/s1"
RZV InChIKey InChI 1.03 ZYUHYZCJHIQCIO-RKDXNWHRSA-N
RZV SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](CCC(O)=O)[P](O)(=O)C[C@@H](CCC(O)=O)C(O)=O"
RZV SMILES CACTVS 3.385 "CC(=O)N[CH](CCC(O)=O)[P](O)(=O)C[CH](CCC(O)=O)C(O)=O"
RZV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CCC(=O)O)P(=O)(C[C@@H](CCC(=O)O)C(=O)O)O"
RZV SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CCC(=O)O)P(=O)(CC(CCC(=O)O)C(=O)O)O"
#
_pdbx_chem_comp_identifier.comp_id RZV
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-oxidanyl-phosphoryl]methyl]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RZV "Create component" 2020-03-03 RCSB
RZV "Initial release" 2020-08-12 RCSB
##