data_S02 # _chem_comp.id S02 _chem_comp.name "PHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL] ESTER" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H31 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "STILBENEDIETHER NUCLEOTIDE LINKER" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-08-18 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.408 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S02 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CS7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S02 P P P 0 1 N N N 12.929 -5.387 21.371 1.181 -0.030 -7.468 P S02 1 S02 O1P O1P O 0 1 N N N 13.366 -6.495 20.509 2.404 0.684 -7.042 O1P S02 2 S02 O2P O2P O 0 1 N N N 13.333 -5.370 22.780 0.368 0.876 -8.521 O2P S02 3 S02 O3P O3P O 0 1 N Y N 11.359 -5.411 21.382 1.588 -1.424 -8.163 O3P S02 4 S02 "O5'" O5* O 0 1 N N N 13.241 -4.001 20.658 0.255 -0.322 -6.183 "O5'" S02 5 S02 "C5'" C5* C 0 1 N N N 13.093 -3.852 19.235 -0.071 0.946 -5.613 "C5'" S02 6 S02 "CA'" CA* C 0 1 N N N 11.776 -4.211 18.715 -0.955 0.740 -4.381 "CA'" S02 7 S02 "OB'" OB* O 0 1 N N N 10.681 -3.430 19.250 -0.252 -0.048 -3.418 "OB'" S02 8 S02 C1A C1A C 0 1 N N N 9.383 -3.479 18.550 -1.125 -0.205 -2.298 C1A S02 9 S02 C6A C6A C 0 1 N N N 8.251 -2.738 18.791 -0.834 -1.539 -1.610 C6A S02 10 S02 C2A C2A C 0 1 N N N 9.410 -4.431 17.501 -0.901 0.944 -1.314 C2A S02 11 S02 C3A C3A C 0 1 N N N 8.301 -4.618 16.755 -1.895 0.828 -0.159 C3A S02 12 S02 C4A C4A C 0 1 N N R 7.190 -3.903 17.006 -1.769 -0.549 0.452 C4A S02 13 S02 C7A C7A C 0 1 N N N 6.104 -4.175 16.238 -1.604 -0.701 1.762 C7A S02 14 S02 C5A C5A C 0 1 N N N 7.140 -2.914 18.058 -1.831 -1.750 -0.465 C5A S02 15 S02 C1B C1B C 0 1 N N N 1.990 -4.139 13.684 0.105 0.176 6.355 C1B S02 16 S02 C6B C6B C 0 1 N N N 3.073 -4.976 13.617 0.185 -0.957 5.332 C6B S02 17 S02 C2B C2B C 0 1 N N N 1.958 -3.083 14.614 -0.034 1.517 5.633 C2B S02 18 S02 C3B C3B C 0 1 N N N 3.009 -2.890 15.434 -1.355 1.542 4.857 C3B S02 19 S02 C4B C4B C 0 1 N N R 4.067 -3.713 15.367 -1.400 0.335 3.945 C4B S02 20 S02 C7B C7B C 0 1 N N N 5.108 -3.462 16.219 -1.672 0.468 2.652 C7B S02 21 S02 C5B C5B C 0 1 N N N 4.125 -4.806 14.422 -1.127 -1.026 4.545 C5B S02 22 S02 "OC'" OC* O 0 1 N N N 0.812 -4.245 12.818 1.294 0.186 7.148 "OC'" S02 23 S02 "CD'" CD* C 0 1 N N N 0.891 -5.013 11.617 1.051 -0.666 8.268 "CD'" S02 24 S02 "C3'" C3* C 0 1 N N N -0.330 -5.026 11.082 2.292 -0.701 9.162 "C3'" S02 25 S02 "O3'" O3* O 0 1 N N N -1.271 -4.944 12.145 2.583 0.619 9.624 "O3'" S02 26 S02 HOP2 2HOP H 0 0 N N N 13.050 -4.654 23.337 -0.419 0.374 -8.772 HOP2 S02 27 S02 HOP3 3HOP H 0 0 N N N 11.076 -4.695 21.939 2.141 -1.205 -8.926 HOP3 S02 28 S02 "H5'1" 1H5* H 0 0 N N N 13.360 -2.814 18.925 -0.607 1.548 -6.348 "H5'1" S02 29 S02 "H5'2" 2H5* H 0 0 N N N 13.887 -4.424 18.702 0.844 1.460 -5.321 "H5'2" S02 30 S02 HA1 1HA H 0 1 N N N 11.774 -4.166 17.600 -1.871 0.226 -4.673 HA1 S02 31 S02 HA2 2HA H 0 1 N N N 11.584 -5.299 18.864 -1.204 1.708 -3.947 HA2 S02 32 S02 H1A H1A H 0 1 N N N 8.840 -2.758 19.205 -2.160 -0.192 -2.641 H1A S02 33 S02 H6A1 1H6A H 0 0 N N N 7.979 -2.860 19.865 0.180 -1.530 -1.211 H6A1 S02 34 S02 H6A2 2H6A H 0 0 N N N 8.527 -1.658 18.746 -0.933 -2.350 -2.332 H6A2 S02 35 S02 H2A1 1H2A H 0 0 N N N 10.262 -4.192 16.822 0.114 0.895 -0.923 H2A1 S02 36 S02 H2A2 2H2A H 0 0 N N N 9.731 -5.414 17.917 -1.048 1.895 -1.827 H2A2 S02 37 S02 H3A1 1H3A H 0 0 N N N 8.571 -4.482 15.682 -2.909 0.965 -0.533 H3A1 S02 38 S02 H3A2 2H3A H 0 0 N N N 8.036 -5.700 16.783 -1.673 1.585 0.592 H3A2 S02 39 S02 H7A H7A H 0 1 N N N 6.024 -5.050 15.572 -1.420 -1.682 2.173 H7A S02 40 S02 H5A1 1H5A H 0 0 N N N 6.281 -3.136 18.734 -1.565 -2.649 0.090 H5A1 S02 41 S02 H5A2 2H5A H 0 0 N N N 6.819 -1.935 17.630 -2.838 -1.850 -0.870 H5A2 S02 42 S02 H1B H1B H 0 1 N N N 2.498 -5.085 13.386 -0.758 0.020 7.001 H1B S02 43 S02 H6B1 1H6B H 0 0 N N N 2.709 -6.022 13.739 1.011 -0.770 4.646 H6B1 S02 44 S02 H6B2 2H6B H 0 0 N N N 3.440 -4.983 12.564 0.348 -1.902 5.850 H6B2 S02 45 S02 H2B1 1H2B H 0 0 N N N 1.754 -2.133 14.067 -0.027 2.326 6.363 H2B1 S02 46 S02 H2B2 2H2B H 0 0 N N N 1.036 -3.182 15.233 0.796 1.645 4.940 H2B2 S02 47 S02 H3B1 1H3B H 0 0 N N N 3.367 -1.841 15.309 -2.191 1.504 5.555 H3B1 S02 48 S02 H3B2 2H3B H 0 0 N N N 2.639 -2.874 16.485 -1.413 2.453 4.261 H3B2 S02 49 S02 H7B H7B H 0 1 N N N 5.146 -2.627 16.939 -1.944 1.434 2.254 H7B S02 50 S02 H5B1 1H5B H 0 0 N N N 4.330 -5.756 14.967 -1.941 -1.301 5.214 H5B1 S02 51 S02 H5B2 2H5B H 0 0 N N N 5.050 -4.714 13.807 -1.038 -1.765 3.749 H5B2 S02 52 S02 "HD'1" 1HD* H 0 0 N N N 1.673 -4.646 10.913 0.828 -1.674 7.916 "HD'1" S02 53 S02 "HD'2" 2HD* H 0 0 N N N 1.310 -6.033 11.776 0.203 -0.285 8.838 "HD'2" S02 54 S02 "H3'1" 1H3* H 0 0 N N N -0.474 -4.230 10.314 3.139 -1.082 8.593 "H3'1" S02 55 S02 "H3'2" 2H3* H 0 0 N N N -0.502 -5.905 10.418 2.106 -1.352 10.017 "H3'2" S02 56 S02 "HO3'" HO3* H 0 0 N N N -2.141 -4.953 11.763 3.370 0.553 10.182 "HO3'" S02 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S02 P O1P DOUB N N 1 S02 P O2P SING N N 2 S02 P O3P SING N N 3 S02 P "O5'" SING N N 4 S02 O2P HOP2 SING N N 5 S02 O3P HOP3 SING N N 6 S02 "O5'" "C5'" SING N N 7 S02 "C5'" "CA'" SING N N 8 S02 "C5'" "H5'1" SING N N 9 S02 "C5'" "H5'2" SING N N 10 S02 "CA'" "OB'" SING N N 11 S02 "CA'" HA1 SING N N 12 S02 "CA'" HA2 SING N N 13 S02 "OB'" C1A SING N N 14 S02 C1A C6A SING N N 15 S02 C1A C2A SING N N 16 S02 C1A H1A SING N N 17 S02 C6A C5A SING N N 18 S02 C6A H6A1 SING N N 19 S02 C6A H6A2 SING N N 20 S02 C2A C3A SING N N 21 S02 C2A H2A1 SING N N 22 S02 C2A H2A2 SING N N 23 S02 C3A C4A SING N N 24 S02 C3A H3A1 SING N N 25 S02 C3A H3A2 SING N N 26 S02 C4A C7A DOUB N N 27 S02 C4A C5A SING N N 28 S02 C7A C7B SING N N 29 S02 C7A H7A SING N N 30 S02 C5A H5A1 SING N N 31 S02 C5A H5A2 SING N N 32 S02 C1B C6B SING N N 33 S02 C1B C2B SING N N 34 S02 C1B "OC'" SING N N 35 S02 C1B H1B SING N N 36 S02 C6B C5B SING N N 37 S02 C6B H6B1 SING N N 38 S02 C6B H6B2 SING N N 39 S02 C2B C3B SING N N 40 S02 C2B H2B1 SING N N 41 S02 C2B H2B2 SING N N 42 S02 C3B C4B SING N N 43 S02 C3B H3B1 SING N N 44 S02 C3B H3B2 SING N N 45 S02 C4B C7B DOUB N N 46 S02 C4B C5B SING N N 47 S02 C7B H7B SING N N 48 S02 C5B H5B1 SING N N 49 S02 C5B H5B2 SING N N 50 S02 "OC'" "CD'" SING N N 51 S02 "CD'" "C3'" SING N N 52 S02 "CD'" "HD'1" SING N N 53 S02 "CD'" "HD'2" SING N N 54 S02 "C3'" "O3'" SING N N 55 S02 "C3'" "H3'1" SING N N 56 S02 "C3'" "H3'2" SING N N 57 S02 "O3'" "HO3'" SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S02 SMILES ACDLabs 10.04 "O=P(O)(O)OCCOC2CC/C(=C/C=C1\CCC(OCCO)CC1)CC2" S02 SMILES_CANONICAL CACTVS 3.341 "OCCO[CH]1CC[C@@](CC1)=[CH][CH]=[C@@]2CC[CH](CC2)OCCO[P](O)(O)=O" S02 SMILES CACTVS 3.341 "OCCO[CH]1CC[C](CC1)=[CH][CH]=[C]2CC[CH](CC2)OCCO[P](O)(O)=O" S02 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1CC(=CC=C2CCC(CC2)OCCOP(=O)(O)O)CCC1OCCO" S02 SMILES "OpenEye OEToolkits" 1.5.0 "C1CC(=CC=C2CCC(CC2)OCCOP(=O)(O)O)CCC1OCCO" S02 InChI InChI 1.03 "InChI=1S/C18H31O7P/c19-11-12-23-17-7-3-15(4-8-17)1-2-16-5-9-18(10-6-16)24-13-14-25-26(20,21)22/h1-2,17-19H,3-14H2,(H2,20,21,22)/b15-1-,16-2-/t17-,18-/m1/s1" S02 InChIKey InChI 1.03 OZTBGMTXOWWCDF-SEQCRYNPSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S02 "SYSTEMATIC NAME" ACDLabs 10.04 "2-{[(1R,4Z)-4-{(2Z)-2-[(4R)-4-(2-hydroxyethoxy)cyclohexylidene]ethylidene}cyclohexyl]oxy}ethyl dihydrogen phosphate" S02 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[4-[2-[4-(2-hydroxyethoxy)cyclohexylidene]ethylidene]cyclohexyl]oxyethyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S02 "Create component" 1999-08-18 EBI S02 "Modify descriptor" 2011-06-04 RCSB S02 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S02 _pdbx_chem_comp_synonyms.name "STILBENEDIETHER NUCLEOTIDE LINKER" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##