data_S04 # _chem_comp.id S04 _chem_comp.name "N-(benzylsulfonyl)-3-cyclohexyl-D-alanyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H39 Cl N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-26 _chem_comp.pdbx_modified_date 2012-04-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.162 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S04 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RMO _chem_comp.pdbx_subcomponent_list "PMS ZAL PRO 00T" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S04 C7 C7 C 0 1 N N N 15.969 -17.908 22.025 -5.352 -0.410 -0.150 C PMS 1 S04 S8 S8 S 0 1 N N N 15.467 -16.317 21.915 -3.982 -0.989 -1.188 S PMS 2 S04 C6 C6 C 0 1 Y N N 15.339 -18.550 23.241 -6.478 -1.412 -0.199 C1 PMS 3 S04 C1 C1 C 0 1 Y N N 14.079 -19.135 23.144 -6.471 -2.501 0.652 C2 PMS 4 S04 C2 C2 C 0 1 Y N N 13.496 -19.716 24.267 -7.504 -3.419 0.607 C3 PMS 5 S04 C32 C32 C 0 1 Y N N 14.167 -19.705 25.486 -8.542 -3.248 -0.289 C4 PMS 6 S04 C4 C4 C 0 1 Y N N 15.424 -19.120 25.582 -8.549 -2.158 -1.139 C5 PMS 7 S04 C5 C5 C 0 1 Y N N 16.010 -18.541 24.460 -7.516 -1.240 -1.095 C6 PMS 8 S04 O15 O15 O 0 1 N N N 15.949 -15.787 20.672 -3.446 -2.201 -0.675 O2S PMS 9 S04 O16 O16 O 0 1 N N N 14.035 -16.228 21.980 -4.309 -0.857 -2.564 O1S PMS 10 S04 C12 C12 C 0 1 N N N 19.254 -13.822 24.435 -2.774 2.681 0.237 C1 ZAL 11 S04 C35 C35 C 0 1 N N N 19.572 -13.430 25.877 -3.660 3.768 0.850 C2 ZAL 12 S04 C36 C36 C 0 1 N N N 20.893 -12.676 25.953 -3.620 5.017 -0.034 C3 ZAL 13 S04 C37 C37 C 0 1 N N N 22.025 -13.487 25.335 -2.181 5.527 -0.131 C4 ZAL 14 S04 C38 C38 C 0 1 N N N 21.688 -13.943 23.918 -1.295 4.440 -0.744 C5 ZAL 15 S04 C39 C39 C 0 1 N N N 20.370 -14.706 23.882 -1.335 3.192 0.140 C6 ZAL 16 S04 N9 N9 N 0 1 N N N 16.098 -15.489 23.142 -2.780 0.124 -0.945 N ZAL 17 S04 C10 C10 C 0 1 N N R 17.319 -14.716 23.012 -2.167 0.262 0.378 CA ZAL 18 S04 C11 C11 C 0 1 N N N 17.924 -14.567 24.406 -2.813 1.433 1.121 CB ZAL 19 S04 C13 C13 C 0 1 N N N 16.992 -13.378 22.406 -0.690 0.520 0.222 C ZAL 20 S04 O17 O17 O 0 1 N N N 16.070 -12.716 22.861 -0.206 0.626 -0.885 O ZAL 21 S04 N14 N14 N 0 1 N N N 17.731 -12.950 21.381 0.093 0.633 1.314 N PRO 22 S04 C18 C18 C 0 1 N N S 17.425 -11.662 20.752 1.542 0.884 1.306 CA PRO 23 S04 C19 C19 C 0 1 N N N 15.965 -11.495 20.437 2.249 -0.220 0.562 C PRO 24 S04 O20 O20 O 0 1 N N N 15.318 -12.404 19.934 1.611 -1.132 0.080 O PRO 25 S04 C23 C23 C 0 1 N N N 18.233 -11.688 19.456 2.010 0.908 2.776 CB PRO 26 S04 C24 C24 C 0 1 N N N 19.352 -12.685 19.695 0.900 0.109 3.508 CG PRO 27 S04 C25 C25 C 0 1 N N N 18.844 -13.662 20.745 -0.362 0.533 2.712 CD PRO 28 S04 N21 N21 N 0 1 N N N 15.405 -10.326 20.732 3.590 -0.192 0.431 N19 00T 29 S04 C22 C22 C 0 1 N N N 14.008 -10.036 20.442 4.277 -1.265 -0.293 C10 00T 30 S04 C26 C26 C 0 1 Y N N 13.106 -10.038 21.650 5.760 -0.999 -0.294 C6 00T 31 S04 C27 C27 C 0 1 Y N N 12.286 -11.120 21.946 6.520 -1.311 0.818 C5 00T 32 S04 C28 C28 C 0 1 N N N 12.274 -12.354 21.074 5.863 -1.916 2.032 C32 00T 33 S04 N34 N34 N 0 1 N N N 13.047 -13.417 21.690 5.660 -3.354 1.814 N33 00T 34 S04 C29 C29 C 0 1 Y N N 11.451 -11.078 23.054 7.881 -1.068 0.817 C4 00T 35 S04 C30 C30 C 0 1 Y N N 11.426 -9.955 23.873 8.483 -0.512 -0.296 C3 00T 36 S04 C31 C31 C 0 1 Y N N 12.259 -8.893 23.569 7.723 -0.200 -1.410 C2 00T 37 S04 CL3 CL3 CL 0 0 N N N 12.244 -7.452 24.608 8.479 0.498 -2.809 CL1 00T 38 S04 C33 C33 C 0 1 Y N N 13.093 -8.921 22.465 6.363 -0.450 -1.411 C7 00T 39 S04 H7 H7 H 0 1 N N N 17.065 -17.942 22.118 -5.706 0.552 -0.519 H2A PMS 40 S04 H7A H7A H 0 1 N N N 15.661 -18.454 21.121 -5.008 -0.301 0.879 H1 PMS 41 S04 H1 H1 H 0 1 N N N 13.555 -19.138 22.200 -5.662 -2.632 1.355 H2 PMS 42 S04 H2 H2 H 0 1 N N N 12.522 -20.176 24.192 -7.499 -4.270 1.272 H3 PMS 43 S04 H32 H32 H 0 1 N N N 13.711 -20.151 26.357 -9.349 -3.965 -0.324 H4 PMS 44 S04 H4 H4 H 0 1 N N N 15.946 -19.115 26.527 -9.361 -2.024 -1.839 H5 PMS 45 S04 H5 H5 H 0 1 N N N 16.986 -18.085 24.536 -7.521 -0.389 -1.760 H6 PMS 46 S04 H12 H12 H 0 1 N N N 19.180 -12.920 23.809 -3.139 2.433 -0.759 H1 ZAL 47 S04 H35 H35 H 0 1 N N N 18.768 -12.784 26.259 -4.685 3.405 0.919 H2 ZAL 48 S04 H35A H35A H 0 0 N N N 19.643 -14.341 26.489 -3.294 4.016 1.846 H2A ZAL 49 S04 H36 H36 H 0 1 N N N 20.794 -11.727 25.406 -3.986 4.768 -1.030 H3 ZAL 50 S04 H36A H36A H 0 0 N N N 21.131 -12.479 27.009 -4.251 5.791 0.403 H3A ZAL 51 S04 H37 H37 H 0 1 N N N 22.928 -12.861 25.298 -2.153 6.416 -0.761 H4 ZAL 52 S04 H37A H37A H 0 0 N N N 22.203 -14.376 25.958 -1.815 5.775 0.865 H4A ZAL 53 S04 H38 H38 H 0 1 N N N 21.605 -13.058 23.270 -1.661 4.192 -1.740 H5 ZAL 54 S04 H38A H38A H 0 0 N N N 22.491 -14.602 23.556 -0.270 4.804 -0.813 H5A ZAL 55 S04 H39 H39 H 0 1 N N N 20.456 -15.615 24.496 -0.969 3.440 1.136 H6 ZAL 56 S04 H39A H39A H 0 0 N N N 20.136 -14.985 22.844 -0.703 2.418 -0.297 H6A ZAL 57 S04 HN9 HN9 H 0 1 N N N 15.394 -14.830 23.407 -2.483 0.684 -1.678 HN ZAL 58 S04 H10 H10 H 0 1 N N N 18.046 -15.214 22.354 -2.317 -0.656 0.946 HA ZAL 59 S04 H11 H11 H 0 1 N N N 17.209 -14.007 25.027 -3.849 1.187 1.356 HB ZAL 60 S04 H11A H11A H 0 0 N N N 18.092 -15.576 24.811 -2.267 1.624 2.044 HBA ZAL 61 S04 H18 H18 H 0 1 N N N 17.674 -10.826 21.422 1.750 1.843 0.832 HA PRO 62 S04 H23 H23 H 0 1 N N N 17.604 -12.002 18.610 2.975 0.413 2.882 HB2 PRO 63 S04 H23A H23A H 0 0 N N N 18.639 -10.691 19.229 2.057 1.932 3.149 HB3 PRO 64 S04 H24 H24 H 0 1 N N N 19.600 -13.216 18.764 1.074 -0.964 3.428 HG2 PRO 65 S04 H24A H24A H 0 0 N N N 20.256 -12.170 20.054 0.822 0.414 4.552 HG3 PRO 66 S04 H25 H25 H 0 1 N N N 19.629 -13.911 21.474 -0.728 1.499 3.062 HD2 PRO 67 S04 H25A H25A H 0 0 N N N 18.507 -14.604 20.287 -1.141 -0.224 2.804 HD3 PRO 68 S04 HN21 HN21 H 0 0 N N N 15.963 -9.621 21.169 4.100 0.537 0.816 HN19 00T 69 S04 H22 H22 H 0 1 N N N 13.959 -9.036 19.987 4.079 -2.218 0.197 H10 00T 70 S04 H22A H22A H 0 0 N N N 13.641 -10.805 19.747 3.913 -1.301 -1.319 H10A 00T 71 S04 H28 H28 H 0 1 N N N 11.236 -12.693 20.942 6.503 -1.767 2.902 H32 00T 72 S04 H28A H28A H 0 0 N N N 12.713 -12.109 20.096 4.900 -1.434 2.202 H32A 00T 73 S04 HN34 HN34 H 0 0 N N N 13.030 -14.226 21.102 6.531 -3.812 1.590 HN33 00T 74 S04 HN3A HN3A H 0 0 N N N 13.992 -13.114 21.812 5.221 -3.783 2.615 HN3A 00T 75 S04 H29 H29 H 0 1 N N N 10.817 -11.922 23.281 8.473 -1.311 1.686 H4 00T 76 S04 H30 H30 H 0 1 N N N 10.769 -9.912 24.729 9.546 -0.322 -0.297 H3 00T 77 S04 H33 H33 H 0 1 N N N 13.729 -8.077 22.242 5.770 -0.211 -2.282 H7 00T 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S04 C1 C2 DOUB Y N 1 S04 C1 C6 SING Y N 2 S04 C2 C32 SING Y N 3 S04 CL3 C31 SING N N 4 S04 C4 C5 SING Y N 5 S04 C4 C32 DOUB Y N 6 S04 C5 C6 DOUB Y N 7 S04 C6 C7 SING N N 8 S04 C7 S8 SING N N 9 S04 S8 N9 SING N N 10 S04 S8 O15 DOUB N N 11 S04 S8 O16 DOUB N N 12 S04 N9 C10 SING N N 13 S04 C10 C11 SING N N 14 S04 C10 C13 SING N N 15 S04 C11 C12 SING N N 16 S04 C12 C35 SING N N 17 S04 C12 C39 SING N N 18 S04 C13 N14 SING N N 19 S04 C13 O17 DOUB N N 20 S04 N14 C18 SING N N 21 S04 N14 C25 SING N N 22 S04 C18 C19 SING N N 23 S04 C18 C23 SING N N 24 S04 C19 O20 DOUB N N 25 S04 C19 N21 SING N N 26 S04 N21 C22 SING N N 27 S04 C22 C26 SING N N 28 S04 C23 C24 SING N N 29 S04 C24 C25 SING N N 30 S04 C26 C27 DOUB Y N 31 S04 C26 C33 SING Y N 32 S04 C27 C28 SING N N 33 S04 C27 C29 SING Y N 34 S04 C28 N34 SING N N 35 S04 C29 C30 DOUB Y N 36 S04 C30 C31 SING Y N 37 S04 C31 C33 DOUB Y N 38 S04 C35 C36 SING N N 39 S04 C36 C37 SING N N 40 S04 C37 C38 SING N N 41 S04 C38 C39 SING N N 42 S04 C1 H1 SING N N 43 S04 C2 H2 SING N N 44 S04 C4 H4 SING N N 45 S04 C5 H5 SING N N 46 S04 C7 H7 SING N N 47 S04 C7 H7A SING N N 48 S04 N9 HN9 SING N N 49 S04 C10 H10 SING N N 50 S04 C11 H11 SING N N 51 S04 C11 H11A SING N N 52 S04 C12 H12 SING N N 53 S04 C18 H18 SING N N 54 S04 N21 HN21 SING N N 55 S04 C22 H22 SING N N 56 S04 C22 H22A SING N N 57 S04 C23 H23 SING N N 58 S04 C23 H23A SING N N 59 S04 C24 H24 SING N N 60 S04 C24 H24A SING N N 61 S04 C25 H25 SING N N 62 S04 C25 H25A SING N N 63 S04 C28 H28 SING N N 64 S04 C28 H28A SING N N 65 S04 C29 H29 SING N N 66 S04 C30 H30 SING N N 67 S04 C32 H32 SING N N 68 S04 C33 H33 SING N N 69 S04 N34 HN34 SING N N 70 S04 N34 HN3A SING N N 71 S04 C35 H35 SING N N 72 S04 C35 H35A SING N N 73 S04 C36 H36 SING N N 74 S04 C36 H36A SING N N 75 S04 C37 H37 SING N N 76 S04 C37 H37A SING N N 77 S04 C38 H38 SING N N 78 S04 C38 H38A SING N N 79 S04 C39 H39 SING N N 80 S04 C39 H39A SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S04 SMILES ACDLabs 12.01 "O=C(NCc1cc(Cl)ccc1CN)C4N(C(=O)C(NS(=O)(=O)Cc2ccccc2)CC3CCCCC3)CCC4" S04 SMILES_CANONICAL CACTVS 3.370 "NCc1ccc(Cl)cc1CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](CC3CCCCC3)N[S](=O)(=O)Cc4ccccc4" S04 SMILES CACTVS 3.370 "NCc1ccc(Cl)cc1CNC(=O)[CH]2CCCN2C(=O)[CH](CC3CCCCC3)N[S](=O)(=O)Cc4ccccc4" S04 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)CS(=O)(=O)N[C@H](CC2CCCCC2)C(=O)N3CCC[C@H]3C(=O)NCc4cc(ccc4CN)Cl" S04 SMILES "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)CS(=O)(=O)NC(CC2CCCCC2)C(=O)N3CCCC3C(=O)NCc4cc(ccc4CN)Cl" S04 InChI InChI 1.03 "InChI=1S/C29H39ClN4O4S/c30-25-14-13-23(18-31)24(17-25)19-32-28(35)27-12-7-15-34(27)29(36)26(16-21-8-3-1-4-9-21)33-39(37,38)20-22-10-5-2-6-11-22/h2,5-6,10-11,13-14,17,21,26-27,33H,1,3-4,7-9,12,15-16,18-20,31H2,(H,32,35)/t26-,27+/m1/s1" S04 InChIKey InChI 1.03 SMGIPPNIBFQJBW-SXOMAYOGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S04 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(benzylsulfonyl)-3-cyclohexyl-D-alanyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide" S04 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-N-[[2-(aminomethyl)-5-chloranyl-phenyl]methyl]-1-[(2R)-3-cyclohexyl-2-[(phenylmethyl)sulfonylamino]propanoyl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S04 "Create component" 2011-04-26 PDBJ S04 "Modify subcomponent list" 2011-05-05 PDBJ S04 "Modify aromatic_flag" 2011-06-04 RCSB S04 "Modify descriptor" 2011-06-04 RCSB #