data_S1N
#
_chem_comp.id S1N
_chem_comp.name "(~{E})-4-methylnon-4-enedial"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-11-05
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 168.233
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S1N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6ZFX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S1N C12 C1 C 0 1 N N N N N N 184.380 99.917 150.587 -4.308 1.034 0.484 C12 S1N 1
S1N C1 C2 C 0 1 N N N N N N 183.930 101.145 156.608 0.948 -2.238 0.855 C1 S1N 2
S1N C2 C3 C 0 1 N N N N N N 182.646 101.683 156.056 1.169 -1.184 -0.199 C2 S1N 3
S1N C3 C4 C 0 1 N N N N N N 181.372 101.826 156.885 2.564 -0.702 -0.503 C3 S1N 4
S1N C4 C5 C 0 1 N N N N N N 181.493 102.278 158.348 2.946 0.408 0.479 C4 S1N 5
S1N C5 C6 C 0 1 N N N N N N 181.070 103.725 158.511 4.341 0.889 0.175 C5 S1N 6
S1N C8 C7 C 0 1 N N N N N N 182.548 102.038 154.750 0.148 -0.685 -0.851 C8 S1N 7
S1N C9 C8 C 0 1 N N N N N N 183.684 101.967 153.746 -1.256 -1.074 -0.465 C9 S1N 8
S1N C10 C9 C 0 1 N N N N N N 183.336 101.027 152.595 -2.076 0.187 -0.185 C10 S1N 9
S1N C11 C10 C 0 1 N N N N N N 184.580 100.325 152.036 -3.501 -0.208 0.208 C11 S1N 10
S1N O6 O1 O 0 1 N N N N N N 181.297 104.344 159.542 4.544 2.061 -0.034 O6 S1N 11
S1N O13 O2 O 0 1 N N N N N N 185.306 99.500 149.899 -5.348 1.220 -0.101 O13 S1N 12
S1N H1 H1 H 0 1 N N N N N N 183.395 99.996 150.150 -3.959 1.756 1.207 H1 S1N 13
S1N H2 H2 H 0 1 N N N N N N 183.804 100.919 157.677 1.911 -2.593 1.221 H2 S1N 14
S1N H3 H3 H 0 1 N N N N N N 184.204 100.226 156.069 0.380 -1.812 1.681 H3 S1N 15
S1N H4 H4 H 0 1 N N N N N N 184.725 101.895 156.483 0.394 -3.072 0.424 H4 S1N 16
S1N H5 H5 H 0 1 N N N N N N 180.732 102.558 156.371 3.264 -1.532 -0.403 H5 S1N 17
S1N H6 H6 H 0 1 N N N N N N 180.876 100.844 156.889 2.602 -0.316 -1.521 H6 S1N 18
S1N H7 H7 H 0 1 N N N N N N 180.849 101.643 158.974 2.246 1.237 0.379 H7 S1N 19
S1N H8 H8 H 0 1 N N N N N N 182.539 102.171 158.671 2.909 0.021 1.497 H8 S1N 20
S1N H9 H9 H 0 1 N N N N N N 180.557 104.220 157.700 5.161 0.185 0.144 H9 S1N 21
S1N H10 H10 H 0 1 N N N N N N 181.592 102.397 154.399 0.312 0.004 -1.666 H10 S1N 22
S1N H11 H11 H 0 1 N N N N N N 184.589 101.598 154.251 -1.715 -1.633 -1.280 H11 S1N 23
S1N H12 H12 H 0 1 N N N N N N 183.873 102.973 153.344 -1.227 -1.695 0.431 H12 S1N 24
S1N H13 H13 H 0 1 N N N N N N 182.864 101.609 151.790 -1.616 0.746 0.630 H13 S1N 25
S1N H14 H14 H 0 1 N N N N N N 182.631 100.265 152.958 -2.104 0.808 -1.080 H14 S1N 26
S1N H15 H15 H 0 1 N N N N N N 184.784 99.426 152.636 -3.472 -0.829 1.104 H15 S1N 27
S1N H16 H16 H 0 1 N N N N N N 185.437 101.011 152.100 -3.960 -0.767 -0.607 H16 S1N 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S1N O13 C12 DOUB N N 1
S1N C12 C11 SING N N 2
S1N C11 C10 SING N N 3
S1N C10 C9 SING N N 4
S1N C9 C8 SING N N 5
S1N C8 C2 DOUB N E 6
S1N C2 C1 SING N N 7
S1N C2 C3 SING N N 8
S1N C3 C4 SING N N 9
S1N C4 C5 SING N N 10
S1N C5 O6 DOUB N N 11
S1N C12 H1 SING N N 12
S1N C1 H2 SING N N 13
S1N C1 H3 SING N N 14
S1N C1 H4 SING N N 15
S1N C3 H5 SING N N 16
S1N C3 H6 SING N N 17
S1N C4 H7 SING N N 18
S1N C4 H8 SING N N 19
S1N C5 H9 SING N N 20
S1N C8 H10 SING N N 21
S1N C9 H11 SING N N 22
S1N C9 H12 SING N N 23
S1N C10 H13 SING N N 24
S1N C10 H14 SING N N 25
S1N C11 H15 SING N N 26
S1N C11 H16 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S1N InChI InChI 1.03 "InChI=1S/C10H16O2/c1-10(7-5-9-12)6-3-2-4-8-11/h6,8-9H,2-5,7H2,1H3/b10-6+"
S1N InChIKey InChI 1.03 AFKSPUYAXUNQPA-UXBLZVDNSA-N
S1N SMILES_CANONICAL CACTVS 3.385 "C\C(CCC=O)=C/CCCC=O"
S1N SMILES CACTVS 3.385 "CC(CCC=O)=CCCCC=O"
S1N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C(=C\CCCC=O)/CCC=O"
S1N SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCCCC=O)CCC=O"
#
_pdbx_chem_comp_identifier.comp_id S1N
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(~{E})-4-methylnon-4-enedial"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S1N "Create component" 2020-11-05 PDBE
S1N "Initial release" 2020-11-18 RCSB
S1N "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 S1N LYS None Lipid/lipid-like "Amino-acid side chain" "Any position" C1 NZ ? ?
2 S1N LYS None Lipid/lipid-like "Amino-acid side chain" "Any position" C5 NZ ? ?
#