data_S1S # _chem_comp.id S1S _chem_comp.name "2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2-OXOETHYL)-9-(CARBOXYMETHYL)-14-(NAPHTHALEN-1-YLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL)PHENYL)MALONIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C41 H46 N4 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-09-02 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 754.825 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S1S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 2AOA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S1S O9 O9 O 0 1 N N N 43.009 22.961 5.294 6.776 3.559 0.051 O9 S1S 1 S1S C40 C40 C 0 1 N N N 42.430 22.259 4.453 5.645 3.001 0.512 C40 S1S 2 S1S O8 O8 O 0 1 N N N 41.912 22.738 3.331 5.698 2.132 1.350 O8 S1S 3 S1S C39 C39 C 0 1 N N N 42.617 20.770 4.910 4.310 3.460 -0.014 C39 S1S 4 S1S C38 C38 C 0 1 N N S 44.110 20.277 4.972 3.193 2.670 0.671 C38 S1S 5 S1S C15 C15 C 0 1 N N S 44.574 19.051 5.839 1.835 3.220 0.230 C15 S1S 6 S1S C16 C16 C 0 1 Y N N 44.220 19.124 7.287 1.258 2.333 -0.843 C16 S1S 7 S1S C17 C17 C 0 1 Y N N 42.979 18.679 7.721 1.353 2.703 -2.171 C17 S1S 8 S1S C18 C18 C 0 1 Y N N 42.619 18.882 9.069 0.823 1.889 -3.155 C18 S1S 9 S1S C19 C19 C 0 1 Y N N 43.474 19.513 9.991 0.199 0.705 -2.811 C19 S1S 10 S1S C22 C22 C 0 1 N N N 42.964 19.597 11.407 -0.380 -0.182 -3.883 C22 S1S 11 S1S C24 C24 C 0 1 N N N 43.215 18.365 12.187 0.289 -1.531 -3.834 C24 S1S 12 S1S O3 O3 O 0 1 N N N 44.076 17.593 11.737 -0.069 -2.490 -4.703 O3 S1S 13 S1S O2 O2 O 0 1 N N N 42.529 18.028 13.175 1.147 -1.750 -3.012 O2 S1S 14 S1S C23 C23 C 0 1 N N N 43.411 20.844 12.055 -1.860 -0.346 -3.655 C23 S1S 15 S1S O1 O1 O 0 1 N N N 43.985 20.781 13.173 -2.589 -1.100 -4.493 O1 S1S 16 S1S O O O 0 1 N N N 43.062 21.889 11.416 -2.391 0.201 -2.717 O S1S 17 S1S C20 C20 C 0 1 Y N N 44.747 20.047 9.520 0.104 0.335 -1.482 C20 S1S 18 S1S C21 C21 C 0 1 Y N N 45.015 19.881 8.166 0.638 1.146 -0.499 C21 S1S 19 S1S C14 C14 C 0 1 N N N 43.973 17.775 5.164 0.900 3.254 1.411 C14 S1S 20 S1S C13 C13 C 0 1 N N N 44.717 16.695 4.867 -0.349 2.887 1.268 C13 S1S 21 S1S C12 C12 C 0 1 N N N 44.228 15.418 4.175 -1.284 2.920 2.449 C12 S1S 22 S1S C37 C37 C 0 1 N N N 44.877 20.461 3.742 3.296 1.217 0.286 C37 S1S 23 S1S O7 O7 O 0 1 N N N 44.451 19.709 2.844 3.226 0.876 -0.876 O7 S1S 24 S1S N3 N3 N 0 1 N N N 45.988 21.163 3.447 3.471 0.289 1.281 N3 S1S 25 S1S C31 C31 C 0 1 N N N 46.580 21.408 2.092 3.577 -1.109 0.797 C31 S1S 26 S1S C32 C32 C 0 1 N N N 47.816 22.215 2.634 4.922 -1.685 1.241 C32 S1S 27 S1S C33 C33 C 0 1 N N N 47.601 23.715 2.854 5.059 -3.118 0.722 C33 S1S 28 S1S C34 C34 C 0 1 N N N 46.777 24.392 1.700 4.979 -3.117 -0.806 C34 S1S 29 S1S C35 C35 C 0 1 N N N 45.472 23.731 1.516 3.629 -2.546 -1.245 C35 S1S 30 S1S C36 C36 C 0 1 N N N 45.604 22.132 1.300 3.490 -1.112 -0.729 C36 S1S 31 S1S C30 C30 C 0 1 N N N 46.958 20.072 1.565 2.453 -1.920 1.378 C30 S1S 32 S1S O6 O6 O 0 1 N N N 46.828 19.867 0.404 2.660 -3.039 1.797 O6 S1S 33 S1S N2 N2 N 0 1 N N N 47.554 19.294 2.380 1.200 -1.386 1.431 N2 S1S 34 S1S C27 C27 C 0 1 N N R 47.951 17.864 2.460 0.149 -2.262 1.993 C27 S1S 35 S1S C28 C28 C 0 1 N N N 49.298 17.600 2.841 -0.533 -3.035 0.863 C28 S1S 36 S1S C29 C29 C 0 1 N N N 49.070 17.422 4.158 -1.491 -4.040 1.449 C29 S1S 37 S1S N1 N1 N 0 1 N N N 49.798 16.568 4.808 -2.303 -4.749 0.640 N1 S1S 38 S1S O5 O5 O 0 1 N N N 48.202 18.061 4.718 -1.530 -4.212 2.649 O5 S1S 39 S1S C26 C26 C 0 1 N N N 47.126 16.597 1.996 -0.868 -1.410 2.707 C26 S1S 40 S1S O4 O4 O 0 1 N N N 47.569 15.541 1.514 -1.467 -1.840 3.670 O4 S1S 41 S1S N N N 0 1 N N N 45.816 16.896 2.151 -1.103 -0.143 2.253 N S1S 42 S1S C25 C25 C 0 1 N N N 44.719 15.854 1.730 -2.119 0.630 2.999 C25 S1S 43 S1S C11 C11 C 0 1 N N S 44.874 14.869 2.908 -2.419 1.918 2.230 C11 S1S 44 S1S C10 C10 C 0 1 N N N 44.056 13.621 2.515 -2.541 1.604 0.738 C10 S1S 45 S1S C C C 0 1 Y N N 44.263 12.444 3.451 -3.735 0.715 0.507 C S1S 46 S1S C1 C1 C 0 1 Y N N 43.231 12.064 4.322 -3.580 -0.637 0.446 C1 S1S 47 S1S C2 C2 C 0 1 Y N N 43.353 10.836 5.086 -4.672 -1.475 0.234 C2 S1S 48 S1S C3 C3 C 0 1 Y N N 44.544 10.093 5.105 -5.926 -0.968 0.082 C3 S1S 49 S1S C9 C9 C 0 1 Y N N 45.604 10.432 4.215 -6.126 0.422 0.140 C9 S1S 50 S1S C8 C8 C 0 1 Y N N 45.526 11.618 3.407 -5.015 1.275 0.361 C8 S1S 51 S1S C7 C7 C 0 1 Y N N 46.633 11.963 2.492 -5.214 2.665 0.413 C7 S1S 52 S1S C6 C6 C 0 1 Y N N 47.744 11.069 2.437 -6.468 3.172 0.261 C6 S1S 53 S1S C5 C5 C 0 1 Y N N 47.825 9.973 3.292 -7.561 2.333 0.049 C5 S1S 54 S1S C4 C4 C 0 1 Y N N 46.837 9.621 4.189 -7.406 0.982 -0.012 C4 S1S 55 S1S HO9 HO9 H 0 1 N N N 43.015 23.866 5.002 7.633 3.265 0.389 HO9 S1S 56 S1S H391 1H39 H 0 0 N N N 42.192 20.675 5.921 4.266 3.291 -1.090 H391 S1S 57 S1S H392 2H39 H 0 0 N N N 42.113 20.146 4.156 4.183 4.522 0.192 H392 S1S 58 S1S H38 H38 H 0 1 N N N 44.397 21.041 5.708 3.290 2.767 1.752 H38 S1S 59 S1S H15 H15 H 0 1 N N N 45.673 19.035 5.855 1.962 4.229 -0.162 H15 S1S 60 S1S H17 H17 H 0 1 N N N 42.301 18.186 7.039 1.840 3.628 -2.440 H17 S1S 61 S1S H18 H18 H 0 1 N N N 41.651 18.542 9.405 0.897 2.179 -4.193 H18 S1S 62 S1S H22 H22 H 0 1 N N N 41.866 19.654 11.371 -0.211 0.272 -4.860 H22 S1S 63 S1S HO2 HO2 H 0 1 N N N 42.790 17.160 13.459 ? ? ? HO2 S1S 64 S1S HO1 HO1 H 0 1 N N N 44.135 21.659 13.504 -3.539 -1.205 -4.346 HO1 S1S 65 S1S H20 H20 H 0 1 N N N 45.440 20.541 10.185 -0.384 -0.591 -1.213 H20 S1S 66 S1S H21 H21 H 0 1 N N N 45.892 20.366 7.763 0.564 0.857 0.539 H21 S1S 67 S1S H14 H14 H 0 1 N N N 42.920 17.761 4.926 1.260 3.582 2.375 H14 S1S 68 S1S H13 H13 H 0 1 N N N 45.761 16.731 5.142 -0.709 2.558 0.304 H13 S1S 69 S1S H121 1H12 H 0 0 N N N 43.181 15.620 3.902 -0.736 2.656 3.354 H121 S1S 70 S1S H122 2H12 H 0 0 N N N 44.473 14.644 4.916 -1.699 3.922 2.556 H122 S1S 71 S1S HN3 HN3 H 0 1 N N N 46.474 21.569 4.221 3.521 0.526 2.220 HN3 S1S 72 S1S H321 1H32 H 0 0 N N N 48.090 21.780 3.606 5.729 -1.073 0.838 H321 S1S 73 S1S H322 2H32 H 0 0 N N N 48.588 22.136 1.856 4.975 -1.686 2.330 H322 S1S 74 S1S H331 1H33 H 0 0 N N N 48.586 24.202 2.905 6.020 -3.527 1.035 H331 S1S 75 S1S H332 2H33 H 0 0 N N N 47.027 23.835 3.785 4.254 -3.730 1.128 H332 S1S 76 S1S H341 1H34 H 0 0 N N N 47.348 24.317 0.764 5.783 -2.504 -1.212 H341 S1S 77 S1S H342 2H34 H 0 0 N N N 46.599 25.443 1.970 5.079 -4.138 -1.175 H342 S1S 78 S1S H351 1H35 H 0 0 N N N 44.988 24.162 0.628 3.571 -2.547 -2.334 H351 S1S 79 S1S H352 2H35 H 0 0 N N N 44.884 23.895 2.431 2.825 -3.158 -0.838 H352 S1S 80 S1S H361 1H36 H 0 0 N N N 44.621 21.701 1.541 2.527 -0.706 -1.038 H361 S1S 81 S1S H362 2H36 H 0 0 N N N 45.952 22.022 0.263 4.292 -0.498 -1.140 H362 S1S 82 S1S HN2 HN2 H 0 1 N N N 47.756 19.957 3.127 1.009 -0.488 1.118 HN2 S1S 83 S1S H27 H27 H 0 1 N N N 46.966 18.016 2.960 0.597 -2.963 2.697 H27 S1S 84 S1S H281 1H28 H 0 0 N N N 49.736 16.723 2.343 0.221 -3.554 0.271 H281 S1S 85 S1S H282 2H28 H 0 0 N N N 50.038 18.370 2.575 -1.080 -2.340 0.226 H282 S1S 86 S1S HN11 1HN1 H 0 0 N N N 50.472 16.121 4.218 -2.919 -5.396 1.017 HN11 S1S 87 S1S HN12 2HN1 H 0 0 N N N 49.698 16.377 5.784 -2.274 -4.608 -0.320 HN12 S1S 88 S1S HN HN H 0 1 N N N 45.546 17.781 2.532 -0.634 0.226 1.488 HN S1S 89 S1S H251 1H25 H 0 0 N N N 43.711 16.290 1.658 -1.736 0.876 3.989 H251 S1S 90 S1S H252 2H25 H 0 0 N N N 44.840 15.417 0.728 -3.031 0.040 3.094 H252 S1S 91 S1S H11 H11 H 0 1 N N N 45.940 14.676 3.098 -3.355 2.346 2.589 H11 S1S 92 S1S H101 1H10 H 0 0 N N N 42.990 13.889 2.531 -2.667 2.533 0.180 H101 S1S 93 S1S H102 2H10 H 0 0 N N N 44.399 13.308 1.517 -1.638 1.096 0.398 H102 S1S 94 S1S HC1 HC1 H 0 1 N N N 42.352 12.683 4.423 -2.596 -1.065 0.563 HC1 S1S 95 S1S HC2 HC2 H 0 1 N N N 42.504 10.484 5.655 -4.522 -2.544 0.189 HC2 S1S 96 S1S HC3 HC3 H 0 1 N N N 44.658 9.269 5.793 -6.764 -1.630 -0.082 HC3 S1S 97 S1S HC7 HC7 H 0 1 N N N 46.604 12.859 1.888 -4.377 3.327 0.575 HC7 S1S 98 S1S HC6 HC6 H 0 1 N N N 48.534 11.243 1.721 -6.618 4.241 0.305 HC6 S1S 99 S1S HC5 HC5 H 0 1 N N N 48.714 9.362 3.253 -8.545 2.761 -0.068 HC5 S1S 100 S1S HC4 HC4 H 0 1 N N N 46.961 8.778 4.851 -8.262 0.345 -0.178 HC4 S1S 101 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S1S O9 C40 SING N N 1 S1S O9 HO9 SING N N 2 S1S C40 O8 DOUB N N 3 S1S C40 C39 SING N N 4 S1S C39 C38 SING N N 5 S1S C39 H391 SING N N 6 S1S C39 H392 SING N N 7 S1S C38 C15 SING N N 8 S1S C38 C37 SING N N 9 S1S C38 H38 SING N N 10 S1S C15 C16 SING N N 11 S1S C15 C14 SING N N 12 S1S C15 H15 SING N N 13 S1S C16 C17 SING Y N 14 S1S C16 C21 DOUB Y N 15 S1S C17 C18 DOUB Y N 16 S1S C17 H17 SING N N 17 S1S C18 C19 SING Y N 18 S1S C18 H18 SING N N 19 S1S C19 C22 SING N N 20 S1S C19 C20 DOUB Y N 21 S1S C22 C24 SING N N 22 S1S C22 C23 SING N N 23 S1S C22 H22 SING N N 24 S1S C24 O3 DOUB N N 25 S1S C24 O2 SING N N 26 S1S O2 HO2 SING N N 27 S1S C23 O1 SING N N 28 S1S C23 O DOUB N N 29 S1S O1 HO1 SING N N 30 S1S C20 C21 SING Y N 31 S1S C20 H20 SING N N 32 S1S C21 H21 SING N N 33 S1S C14 C13 DOUB N E 34 S1S C14 H14 SING N N 35 S1S C13 C12 SING N N 36 S1S C13 H13 SING N N 37 S1S C12 C11 SING N N 38 S1S C12 H121 SING N N 39 S1S C12 H122 SING N N 40 S1S C37 O7 DOUB N N 41 S1S C37 N3 SING N N 42 S1S N3 C31 SING N N 43 S1S N3 HN3 SING N N 44 S1S C31 C32 SING N N 45 S1S C31 C36 SING N N 46 S1S C31 C30 SING N N 47 S1S C32 C33 SING N N 48 S1S C32 H321 SING N N 49 S1S C32 H322 SING N N 50 S1S C33 C34 SING N N 51 S1S C33 H331 SING N N 52 S1S C33 H332 SING N N 53 S1S C34 C35 SING N N 54 S1S C34 H341 SING N N 55 S1S C34 H342 SING N N 56 S1S C35 C36 SING N N 57 S1S C35 H351 SING N N 58 S1S C35 H352 SING N N 59 S1S C36 H361 SING N N 60 S1S C36 H362 SING N N 61 S1S C30 O6 DOUB N N 62 S1S C30 N2 SING N N 63 S1S N2 C27 SING N N 64 S1S N2 HN2 SING N N 65 S1S C27 C28 SING N N 66 S1S C27 C26 SING N N 67 S1S C27 H27 SING N N 68 S1S C28 C29 SING N N 69 S1S C28 H281 SING N N 70 S1S C28 H282 SING N N 71 S1S C29 N1 SING N N 72 S1S C29 O5 DOUB N N 73 S1S N1 HN11 SING N N 74 S1S N1 HN12 SING N N 75 S1S C26 O4 DOUB N N 76 S1S C26 N SING N N 77 S1S N C25 SING N N 78 S1S N HN SING N N 79 S1S C25 C11 SING N N 80 S1S C25 H251 SING N N 81 S1S C25 H252 SING N N 82 S1S C11 C10 SING N N 83 S1S C11 H11 SING N N 84 S1S C10 C SING N N 85 S1S C10 H101 SING N N 86 S1S C10 H102 SING N N 87 S1S C C1 SING Y N 88 S1S C C8 DOUB Y N 89 S1S C1 C2 DOUB Y N 90 S1S C1 HC1 SING N N 91 S1S C2 C3 SING Y N 92 S1S C2 HC2 SING N N 93 S1S C3 C9 DOUB Y N 94 S1S C3 HC3 SING N N 95 S1S C9 C8 SING Y N 96 S1S C9 C4 SING Y N 97 S1S C8 C7 SING Y N 98 S1S C7 C6 DOUB Y N 99 S1S C7 HC7 SING N N 100 S1S C6 C5 SING Y N 101 S1S C6 HC6 SING N N 102 S1S C5 C4 DOUB Y N 103 S1S C5 HC5 SING N N 104 S1S C4 HC4 SING N N 105 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S1S SMILES ACDLabs 10.04 "O=C(O)C(C(=O)O)c1ccc(cc1)C2C=CCC(CNC(=O)C(NC(=O)C3(NC(=O)C2CC(=O)O)CCCCC3)CC(=O)N)Cc5c4ccccc4ccc5" S1S SMILES_CANONICAL CACTVS 3.341 "NC(=O)C[C@H]1NC(=O)C2(CCCCC2)NC(=O)[C@@H](CC(O)=O)[C@H](\C=C\C[C@H](CNC1=O)Cc3cccc4ccccc34)c5ccc(cc5)C(C(O)=O)C(O)=O" S1S SMILES CACTVS 3.341 "NC(=O)C[CH]1NC(=O)C2(CCCCC2)NC(=O)[CH](CC(O)=O)[CH](C=CC[CH](CNC1=O)Cc3cccc4ccccc34)c5ccc(cc5)C(C(O)=O)C(O)=O" S1S SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)cccc2C[C@@H]3C\C=C\[C@@H]([C@@H](C(=O)NC4(CCCCC4)C(=O)NC(C(=O)NC3)CC(=O)N)CC(=O)O)c5ccc(cc5)C(C(=O)O)C(=O)O" S1S SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)cccc2CC3CC=CC(C(C(=O)NC4(CCCCC4)C(=O)NC(C(=O)NC3)CC(=O)N)CC(=O)O)c5ccc(cc5)C(C(=O)O)C(=O)O" S1S InChI InChI 1.03 ;InChI=1S/C41H46N4O10/c42-33(46)22-32-37(50)43-23-24(20-28-11-7-10-25-9-2-3-12-29(25)28)8-6-13-30(26-14-16-27(17-15-26)35(38(51)52)39(53)54)31(21-34(47)48)36(49)45-41(40(55)44-32)18-4-1-5-19-41/h2-3,6-7,9-17,24,30-32,35H,1,4-5,8,18-23H2,(H2,42,46)(H,43,50)(H,44,55)(H,45,49)(H,47,48)(H,51,52)(H,53,54)/b13-6+/t24-,30+,31-,32+/m0/s1 ; S1S InChIKey InChI 1.03 FYIJOFSDJMOTGX-HGOOHLDYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S1S "SYSTEMATIC NAME" ACDLabs 10.04 "{4-[(9S,10S,11E,14S,18R)-18-(2-amino-2-oxoethyl)-9-(carboxymethyl)-14-(naphthalen-1-ylmethyl)-8,17,20-trioxo-7,16,19-triazaspiro[5.14]icos-11-en-10-yl]phenyl}propanedioic acid" S1S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[4-[(9S,10S,11E,14S)-18-(2-amino-2-oxo-ethyl)-9-(carboxymethyl)-14-(naphthalen-1-ylmethyl)-8,17,20-trioxo-7,16,19-triazaspiro[5.14]icos-11-en-10-yl]phenyl]propanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S1S "Create component" 2005-09-02 RCSB S1S "Modify descriptor" 2011-06-04 RCSB #