data_S28 # _chem_comp.id S28 _chem_comp.name "N-(benzylsulfonyl)glycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-25 _chem_comp.pdbx_modified_date 2012-04-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.546 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S28 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RLW _chem_comp.pdbx_subcomponent_list "PMS GLY PRO 00S" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S28 C7 C7 C 0 1 N N N 18.711 -16.801 26.449 -5.723 -0.056 0.826 C PMS 1 S28 S8 S8 S 0 1 N N N 17.780 -17.346 25.171 -4.665 0.995 -0.206 S PMS 2 S28 C6 C6 C 0 1 Y N N 19.875 -15.970 25.940 -7.146 0.029 0.337 C1 PMS 3 S28 C1 C1 C 0 1 Y N N 19.848 -14.584 26.069 -7.601 -0.854 -0.624 C2 PMS 4 S28 C2 C2 C 0 1 Y N N 20.900 -13.812 25.593 -8.906 -0.776 -1.073 C3 PMS 5 S28 C3 C3 C 0 1 Y N N 21.993 -14.423 24.983 -9.756 0.185 -0.561 C4 PMS 6 S28 C4 C4 C 0 1 Y N N 22.023 -15.804 24.859 -9.302 1.069 0.400 C5 PMS 7 S28 C5 C5 C 0 1 Y N N 20.967 -16.576 25.329 -7.997 0.990 0.850 C6 PMS 8 S28 O13 O13 O 0 1 N N N 18.483 -18.305 24.359 -4.559 0.460 -1.518 O2S PMS 9 S28 O14 O14 O 0 1 N N N 16.574 -17.938 25.679 -4.968 2.367 0.004 O1S PMS 10 S28 N9 N9 N 0 1 N N N 17.379 -16.092 24.263 -3.149 0.809 0.434 N GLY 11 S28 C10 C10 C 0 1 N N N 18.140 -15.853 23.059 -2.485 -0.495 0.378 CA GLY 12 S28 C11 C11 C 0 1 N N N 17.742 -14.538 22.440 -1.017 -0.325 0.677 C GLY 13 S28 O15 O15 O 0 1 N N N 16.683 -14.010 22.769 -0.570 0.777 0.914 O GLY 14 S28 N12 N12 N 0 1 N N N 18.590 -14.029 21.554 -0.202 -1.398 0.682 N PRO 15 S28 C16 C16 C 0 1 N N S 18.297 -12.769 20.883 1.242 -1.376 0.956 CA PRO 16 S28 C17 C17 C 0 1 N N N 16.947 -12.844 20.228 1.941 -0.492 -0.045 C PRO 17 S28 O18 O18 O 0 1 N N N 16.588 -13.869 19.652 1.300 0.069 -0.909 O PRO 18 S28 C21 C21 C 0 1 N N N 19.372 -12.615 19.816 1.756 -2.825 0.825 CB PRO 19 S28 C22 C22 C 0 1 N N N 20.461 -13.609 20.173 0.681 -3.496 -0.070 CG PRO 20 S28 C23 C23 C 0 1 N N N 19.861 -14.620 21.140 -0.611 -2.790 0.419 CD PRO 21 S28 N19 N19 N 0 1 N N N 16.170 -11.761 20.314 3.276 -0.325 0.019 N23 00S 22 S28 C20 C20 C 0 1 N N N 14.835 -11.658 19.733 3.955 0.534 -0.955 C16 00S 23 S28 C24 C24 C 0 1 Y N N 13.810 -11.662 20.840 5.434 0.551 -0.665 C17 00S 24 S28 C31 C31 C 0 1 Y N N 13.319 -12.856 21.351 5.958 1.505 0.189 C22 00S 25 S28 C29 C29 C 0 1 Y N N 12.374 -12.846 22.374 7.310 1.521 0.462 C21 00S 26 S28 C28 C28 C 0 1 Y N N 11.910 -11.634 22.881 8.151 0.581 -0.133 C24 00S 27 S28 C26 C26 C 0 1 N N N 10.897 -11.602 23.989 9.604 0.596 0.152 C27 00S 28 S28 N30 N30 N 0 1 N N N 10.654 -10.518 24.589 10.386 -0.284 -0.405 N35 00S 29 S28 N32 N32 N 0 1 N N N 10.284 -12.653 24.329 10.128 1.542 1.006 N34 00S 30 S28 C27 C27 C 0 1 Y N N 12.404 -10.445 22.366 7.617 -0.375 -0.997 C19 00S 31 S28 C25 C25 C 0 1 Y N N 13.350 -10.456 21.350 6.262 -0.385 -1.259 C18 00S 32 S28 H7 H7 H 0 1 N N N 19.101 -17.666 27.006 -5.674 0.283 1.861 H2A PMS 33 S28 H7A H7A H 0 1 N N N 18.088 -16.182 27.111 -5.380 -1.089 0.766 H1 PMS 34 S28 H1 H1 H 0 1 N N N 19.003 -14.106 26.542 -6.937 -1.609 -1.021 H2 PMS 35 S28 H2 H2 H 0 1 N N N 20.870 -12.737 25.696 -9.261 -1.466 -1.824 H3 PMS 36 S28 H3 H3 H 0 1 N N N 22.811 -13.826 24.609 -10.776 0.247 -0.912 H4 PMS 37 S28 H4 H4 H 0 1 N N N 22.872 -16.283 24.394 -9.967 1.820 0.800 H5 PMS 38 S28 H5 H5 H 0 1 N N N 20.995 -17.650 25.219 -7.642 1.680 1.601 H6 PMS 39 S28 HN9 HN9 H 0 1 N N N 16.430 -16.234 23.980 -2.700 1.564 0.846 H GLY 40 S28 H10 H10 H 0 1 N N N 19.211 -15.826 23.308 -2.931 -1.162 1.116 HA2 GLY 41 S28 H10A H10A H 0 0 N N N 17.945 -16.664 22.342 -2.605 -0.922 -0.617 HA3 GLY 42 S28 H16 H16 H 0 1 N N N 18.288 -11.923 21.586 1.422 -1.006 1.965 HA PRO 43 S28 H21 H21 H 0 1 N N N 18.962 -12.831 18.818 2.731 -2.846 0.338 HB2 PRO 44 S28 H21A H21A H 0 0 N N N 19.770 -11.589 19.811 1.802 -3.308 1.801 HB3 PRO 45 S28 H22 H22 H 0 1 N N N 20.819 -14.119 19.267 0.867 -3.291 -1.124 HG2 PRO 46 S28 H22A H22A H 0 0 N N N 21.307 -13.089 20.646 0.632 -4.569 0.116 HG3 PRO 47 S28 H23 H23 H 0 1 N N N 20.522 -14.782 22.004 -0.978 -3.256 1.333 HD2 PRO 48 S28 H23A H23A H 0 0 N N N 19.704 -15.592 20.649 -1.376 -2.820 -0.357 HD3 PRO 49 S28 HN19 HN19 H 0 0 N N N 16.526 -10.969 20.809 3.789 -0.774 0.710 HN23 00S 50 S28 H20 H20 H 0 1 N N N 14.754 -10.723 19.160 3.786 0.148 -1.960 H16 00S 51 S28 H20A H20A H 0 0 N N N 14.658 -12.513 19.064 3.559 1.547 -0.883 H16A 00S 52 S28 H31 H31 H 0 1 N N N 13.671 -13.796 20.954 5.307 2.235 0.646 H22 00S 53 S28 H29 H29 H 0 1 N N N 12.001 -13.777 22.774 7.718 2.263 1.132 H21 00S 54 S28 HN30 HN30 H 0 0 N N N 9.964 -10.632 25.303 11.338 -0.273 -0.218 HN35 00S 55 S28 HN32 HN32 H 0 0 N N N 9.612 -12.623 25.069 9.545 2.197 1.421 HN34 00S 56 S28 HN3A HN3A H 0 0 N N N 10.471 -13.515 23.858 11.080 1.552 1.193 HN3A 00S 57 S28 H27 H27 H 0 1 N N N 12.050 -9.503 22.758 8.263 -1.106 -1.461 H19 00S 58 S28 H25 H25 H 0 1 N N N 13.729 -9.525 20.956 5.848 -1.124 -1.928 H18 00S 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S28 C1 C2 DOUB Y N 1 S28 C1 C6 SING Y N 2 S28 C2 C3 SING Y N 3 S28 C3 C4 DOUB Y N 4 S28 C4 C5 SING Y N 5 S28 C5 C6 DOUB Y N 6 S28 C6 C7 SING N N 7 S28 C7 S8 SING N N 8 S28 S8 N9 SING N N 9 S28 S8 O13 DOUB N N 10 S28 S8 O14 DOUB N N 11 S28 N9 C10 SING N N 12 S28 C10 C11 SING N N 13 S28 C11 N12 SING N N 14 S28 C11 O15 DOUB N N 15 S28 N12 C16 SING N N 16 S28 N12 C23 SING N N 17 S28 C16 C17 SING N N 18 S28 C16 C21 SING N N 19 S28 C17 O18 DOUB N N 20 S28 C17 N19 SING N N 21 S28 N19 C20 SING N N 22 S28 C20 C24 SING N N 23 S28 C21 C22 SING N N 24 S28 C22 C23 SING N N 25 S28 C24 C25 DOUB Y N 26 S28 C24 C31 SING Y N 27 S28 C25 C27 SING Y N 28 S28 C26 C28 SING N N 29 S28 C26 N30 DOUB N N 30 S28 C26 N32 SING N N 31 S28 C27 C28 DOUB Y N 32 S28 C28 C29 SING Y N 33 S28 C29 C31 DOUB Y N 34 S28 C1 H1 SING N N 35 S28 C2 H2 SING N N 36 S28 C3 H3 SING N N 37 S28 C4 H4 SING N N 38 S28 C5 H5 SING N N 39 S28 C7 H7 SING N N 40 S28 C7 H7A SING N N 41 S28 N9 HN9 SING N N 42 S28 C10 H10 SING N N 43 S28 C10 H10A SING N N 44 S28 C16 H16 SING N N 45 S28 N19 HN19 SING N N 46 S28 C20 H20 SING N N 47 S28 C20 H20A SING N N 48 S28 C21 H21 SING N N 49 S28 C21 H21A SING N N 50 S28 C22 H22 SING N N 51 S28 C22 H22A SING N N 52 S28 C23 H23 SING N N 53 S28 C23 H23A SING N N 54 S28 C25 H25 SING N N 55 S28 C27 H27 SING N N 56 S28 C29 H29 SING N N 57 S28 N30 HN30 SING N N 58 S28 C31 H31 SING N N 59 S28 N32 HN32 SING N N 60 S28 N32 HN3A SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S28 SMILES ACDLabs 12.01 "O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)CNS(=O)(=O)Cc2ccccc2)CCC3" S28 SMILES_CANONICAL CACTVS 3.370 "NC(=N)c1ccc(CNC(=O)[C@@H]2CCCN2C(=O)CN[S](=O)(=O)Cc3ccccc3)cc1" S28 SMILES CACTVS 3.370 "NC(=N)c1ccc(CNC(=O)[CH]2CCCN2C(=O)CN[S](=O)(=O)Cc3ccccc3)cc1" S28 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)CNS(=O)(=O)Cc3ccccc3)\\N" S28 SMILES "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)CS(=O)(=O)NCC(=O)N2CCCC2C(=O)NCc3ccc(cc3)C(=N)N" S28 InChI InChI 1.03 "InChI=1S/C22H27N5O4S/c23-21(24)18-10-8-16(9-11-18)13-25-22(29)19-7-4-12-27(19)20(28)14-26-32(30,31)15-17-5-2-1-3-6-17/h1-3,5-6,8-11,19,26H,4,7,12-15H2,(H3,23,24)(H,25,29)/t19-/m0/s1" S28 InChIKey InChI 1.03 CEBNOQRCTYYHRQ-IBGZPJMESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S28 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(benzylsulfonyl)glycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide" S28 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-[(phenylmethyl)sulfonylamino]ethanoyl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S28 "Create component" 2011-04-25 PDBJ S28 "Modify aromatic_flag" 2011-06-04 RCSB S28 "Modify descriptor" 2011-06-04 RCSB #