data_S2K # _chem_comp.id S2K _chem_comp.name "(2~{S},6~{S})-2-azanyl-6-[[(4~{R})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]heptanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H21 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-06 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 319.311 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S2K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AJO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S2K C10 C1 C 0 1 N N N -11.710 11.544 0.018 3.949 0.095 0.183 C10 S2K 1 S2K C01 C2 C 0 1 N N N -14.443 11.748 1.524 0.344 -3.336 0.124 C01 S2K 2 S2K N01 N1 N 0 1 N N N -9.429 11.034 0.776 4.345 1.559 -1.739 N01 S2K 3 S2K O01 O1 O 0 1 N N N -13.660 13.234 4.398 -1.757 -1.191 -1.105 O01 S2K 4 S2K C02 C3 C 0 1 N N S -13.930 13.197 1.540 0.684 -1.907 -0.214 C02 S2K 5 S2K N02 N2 N 0 1 N N N -14.709 13.983 2.484 -0.230 -1.007 0.494 N02 S2K 6 S2K N14 N3 N 0 1 N N N -14.760 17.490 7.126 -4.019 2.664 0.684 N14 S2K 7 S2K O02 O2 O 0 1 N N N -14.012 10.917 2.256 -0.568 -3.577 0.879 O02 S2K 8 S2K C03 C4 C 0 1 N N N -14.498 15.794 5.424 -3.656 0.381 -0.126 C03 S2K 9 S2K C04 C5 C 0 1 N N N -12.423 13.383 1.712 2.123 -1.611 0.212 C04 S2K 10 S2K O04 O3 O 0 1 N N N -11.805 8.559 0.104 6.671 1.749 -0.470 O04 S2K 11 S2K C05 C6 C 0 1 N N N -15.405 14.718 4.831 -2.372 0.214 0.689 C05 S2K 12 S2K O05 O4 O 0 1 N N N -10.628 8.749 2.097 5.858 2.247 1.524 O05 S2K 13 S2K C06 C7 C 0 1 N N N -14.535 13.888 3.925 -1.432 -0.711 -0.039 C06 S2K 14 S2K C07 C8 C 0 1 N N R -15.365 16.937 5.927 -4.611 1.321 0.613 C07 S2K 15 S2K C08 C9 C 0 1 N N N -15.531 18.016 4.833 -5.922 1.389 -0.127 C08 S2K 16 S2K C09 C10 C 0 1 N N N -11.812 13.035 0.348 2.510 -0.202 -0.243 C09 S2K 17 S2K O09 O5 O 0 1 N N N -15.303 17.757 3.610 -6.159 2.326 -0.852 O09 S2K 18 S2K C11 C11 C 0 1 N N S -10.843 10.782 1.038 4.336 1.503 -0.271 C11 S2K 19 S2K C12 C12 C 0 1 N N N -11.119 9.274 1.037 5.707 1.842 0.254 C12 S2K 20 S2K O03 O6 O 0 1 N N N -15.947 19.173 5.167 -6.827 0.409 0.020 O03 S2K 21 S2K O1 O7 O 0 1 N Y N -15.653 11.280 0.292 1.055 -4.340 -0.413 O1 S2K 22 S2K H1 H1 H 0 1 N N N -12.721 11.111 0.018 4.028 0.029 1.268 H1 S2K 23 S2K H2 H2 H 0 1 N N N -11.263 11.432 -0.981 4.620 -0.632 -0.275 H2 S2K 24 S2K H3 H3 H 0 1 N N N -8.872 10.537 1.441 4.535 2.495 -2.064 H3 S2K 25 S2K H4 H4 H 0 1 N N N -9.201 10.724 -0.147 5.009 0.902 -2.121 H4 S2K 26 S2K H6 H6 H 0 1 N N N -14.162 13.598 0.542 0.584 -1.754 -1.289 H6 S2K 27 S2K H7 H7 H 0 1 N N N -15.395 14.617 2.126 0.030 -0.624 1.346 H7 S2K 28 S2K H8 H8 H 0 1 N N N -14.665 16.771 7.814 -3.850 3.034 -0.239 H8 S2K 29 S2K H9 H9 H 0 1 N N N -13.858 17.859 6.904 -4.600 3.287 1.224 H9 S2K 30 S2K H11 H11 H 0 1 N N N -13.920 15.372 6.259 -3.415 0.802 -1.102 H11 S2K 31 S2K H12 H12 H 0 1 N N N -13.808 16.164 4.651 -4.132 -0.590 -0.257 H12 S2K 32 S2K H13 H13 H 0 1 N N N -12.038 12.707 2.490 2.202 -1.677 1.297 H13 S2K 33 S2K H14 H14 H 0 1 N N N -12.192 14.424 1.983 2.795 -2.337 -0.246 H14 S2K 34 S2K H15 H15 H 0 1 N N N -16.221 15.181 4.257 -1.896 1.186 0.820 H15 S2K 35 S2K H16 H16 H 0 1 N N N -15.828 14.093 5.631 -2.613 -0.207 1.665 H16 S2K 36 S2K H17 H17 H 0 1 N N N -10.822 7.819 2.109 6.757 2.453 1.816 H17 S2K 37 S2K H18 H18 H 0 1 N N N -16.361 16.539 6.171 -4.782 0.946 1.622 H18 S2K 38 S2K H19 H19 H 0 1 N N N -10.796 13.457 0.317 1.838 0.525 0.215 H19 S2K 39 S2K H20 H20 H 0 1 N N N -12.430 13.510 -0.428 2.431 -0.136 -1.328 H20 S2K 40 S2K H21 H21 H 0 1 N N N -11.089 11.167 2.039 3.612 2.221 0.115 H21 S2K 41 S2K H22 H22 H 0 1 N N N -16.033 19.715 4.392 -7.653 0.497 -0.475 H22 S2K 42 S2K H23 H23 H 0 1 N N N -15.833 10.350 0.362 0.799 -5.239 -0.167 H23 S2K 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S2K C10 C09 SING N N 1 S2K C10 C11 SING N N 2 S2K O04 C12 DOUB N N 3 S2K C09 C04 SING N N 4 S2K N01 C11 SING N N 5 S2K C12 C11 SING N N 6 S2K C12 O05 SING N N 7 S2K C01 C02 SING N N 8 S2K C01 O02 DOUB N N 9 S2K C02 C04 SING N N 10 S2K C02 N02 SING N N 11 S2K N02 C06 SING N N 12 S2K O09 C08 DOUB N N 13 S2K C06 O01 DOUB N N 14 S2K C06 C05 SING N N 15 S2K C05 C03 SING N N 16 S2K C08 O03 SING N N 17 S2K C08 C07 SING N N 18 S2K C03 C07 SING N N 19 S2K C07 N14 SING N N 20 S2K C01 O1 SING N N 21 S2K C10 H1 SING N N 22 S2K C10 H2 SING N N 23 S2K N01 H3 SING N N 24 S2K N01 H4 SING N N 25 S2K C02 H6 SING N N 26 S2K N02 H7 SING N N 27 S2K N14 H8 SING N N 28 S2K N14 H9 SING N N 29 S2K C03 H11 SING N N 30 S2K C03 H12 SING N N 31 S2K C04 H13 SING N N 32 S2K C04 H14 SING N N 33 S2K C05 H15 SING N N 34 S2K C05 H16 SING N N 35 S2K O05 H17 SING N N 36 S2K C07 H18 SING N N 37 S2K C09 H19 SING N N 38 S2K C09 H20 SING N N 39 S2K C11 H21 SING N N 40 S2K O03 H22 SING N N 41 S2K O1 H23 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S2K InChI InChI 1.03 "InChI=1S/C12H21N3O7/c13-6(10(17)18)2-1-3-8(12(21)22)15-9(16)5-4-7(14)11(19)20/h6-8H,1-5,13-14H2,(H,15,16)(H,17,18)(H,19,20)(H,21,22)/t6-,7+,8-/m0/s1" S2K InChIKey InChI 1.03 QIFGMZZTJRULMA-RNJXMRFFSA-N S2K SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC[C@H](NC(=O)CC[C@@H](N)C(O)=O)C(O)=O)C(O)=O" S2K SMILES CACTVS 3.385 "N[CH](CCC[CH](NC(=O)CC[CH](N)C(O)=O)C(O)=O)C(O)=O" S2K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C[C@@H](C(=O)O)N)C[C@@H](C(=O)O)NC(=O)CC[C@H](C(=O)O)N" S2K SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(C(=O)O)N)CC(C(=O)O)NC(=O)CCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id S2K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},6~{S})-2-azanyl-6-[[(4~{R})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]heptanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S2K "Create component" 2020-11-06 PDBE S2K "Initial release" 2021-10-06 RCSB ##