data_S37
#
_chem_comp.id S37
_chem_comp.name "(2~{S})-2-[[[(3~{S})-3-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-oxidanyl-phosphoryl]methyl]pentanedioic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H20 N O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-03
_chem_comp.pdbx_modified_date 2020-08-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 353.262
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S37
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6VZV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S37 C1 C1 C 0 1 N N S 36.753 -19.211 5.420 3.963 -0.161 0.490 C1 S37 1
S37 C10 C2 C 0 1 N N N 37.994 -18.881 7.591 1.477 0.089 0.524 C10 S37 2
S37 C14 C3 C 0 1 N N N 37.611 -17.466 10.157 -1.478 0.434 0.423 C14 S37 3
S37 C15 C4 C 0 1 N N S 37.541 -18.532 11.251 -2.796 -0.222 0.007 C15 S37 4
S37 C16 C5 C 0 1 N N N 36.229 -18.452 11.981 -2.879 -0.275 -1.496 C16 S37 5
S37 C19 C6 C 0 1 N N N 38.672 -18.335 12.262 -3.968 0.595 0.555 C19 S37 6
S37 C20 C7 C 0 1 N N N 39.328 -16.959 12.166 -5.281 -0.128 0.247 C20 S37 7
S37 C21 C8 C 0 1 N N N 39.640 -16.425 13.546 -6.435 0.677 0.786 C21 S37 8
S37 C3 C9 C 0 1 N N N 36.824 -21.506 4.627 4.911 2.018 -0.050 C3 S37 9
S37 C5 C10 C 0 1 N N N 37.579 -22.518 3.818 5.080 3.194 -0.978 C5 S37 10
S37 C6 C11 C 0 1 N N N 35.970 -18.279 4.544 5.096 -1.133 0.281 C6 S37 11
S37 C9 C12 C 0 1 N N N 37.846 -18.433 6.142 2.633 -0.857 0.193 C9 S37 12
S37 N2 N1 N 0 1 N N N 37.350 -20.285 4.650 4.128 0.982 -0.411 N2 S37 13
S37 O12 O1 O 0 1 N N N 36.336 -16.745 7.873 -0.114 -1.213 -1.232 O12 S37 14
S37 O13 O2 O 0 1 N N N 35.625 -18.864 8.911 -0.288 -1.997 1.161 O13 S37 15
S37 O17 O3 O 0 1 N N N 35.286 -17.820 11.463 -1.976 0.168 -2.167 O17 S37 16
S37 O18 O4 O 0 1 N N N 36.127 -19.025 13.087 -3.955 -0.813 -2.091 O18 S37 17
S37 O22 O5 O 0 1 N N N 40.225 -15.323 13.638 -6.229 1.721 1.358 O22 S37 18
S37 O23 O6 O 0 1 N N N 39.300 -17.099 14.542 -7.693 0.234 0.631 O23 S37 19
S37 O4 O7 O 0 1 N N N 35.795 -21.783 5.223 5.479 2.003 1.021 O4 S37 20
S37 O7 O8 O 0 1 N N N 36.046 -17.050 4.764 5.153 -2.262 1.004 O7 S37 21
S37 O8 O9 O 0 1 N N N 35.268 -18.770 3.633 5.953 -0.894 -0.536 O8 S37 22
S37 P11 P1 P 0 1 N N N 36.806 -17.974 8.615 -0.107 -0.741 0.171 P11 S37 23
S37 H1 H1 H 0 1 N N N 36.075 -19.637 6.174 3.968 0.187 1.523 H1 S37 24
S37 H2 H2 H 0 1 N N N 37.796 -19.960 7.665 1.519 0.358 1.580 H2 S37 25
S37 H3 H3 H 0 1 N N N 39.016 -18.671 7.939 1.559 0.989 -0.084 H3 S37 26
S37 H4 H4 H 0 1 N N N 38.669 -17.251 9.945 -1.309 1.325 -0.182 H4 S37 27
S37 H5 H5 H 0 1 N N N 37.118 -16.554 10.525 -1.527 0.714 1.475 H5 S37 28
S37 H6 H6 H 0 1 N N N 37.642 -19.526 10.790 -2.839 -1.235 0.409 H6 S37 29
S37 H7 H7 H 0 1 N N N 38.261 -18.457 13.275 -3.859 0.707 1.634 H7 S37 30
S37 H8 H8 H 0 1 N N N 39.440 -19.102 12.083 -3.975 1.578 0.086 H8 S37 31
S37 H9 H9 H 0 1 N N N 40.262 -17.042 11.590 -5.389 -0.240 -0.832 H9 S37 32
S37 H10 H10 H 0 1 N N N 38.643 -16.266 11.656 -5.273 -1.111 0.716 H10 S37 33
S37 H11 H11 H 0 1 N N N 37.060 -23.487 3.865 4.498 3.028 -1.884 H11 S37 34
S37 H12 H12 H 0 1 N N N 37.635 -22.183 2.772 4.732 4.100 -0.482 H12 S37 35
S37 H13 H13 H 0 1 N N N 38.596 -22.627 4.224 6.133 3.303 -1.237 H13 S37 36
S37 H14 H14 H 0 1 N N N 38.801 -18.593 5.620 2.592 -1.127 -0.862 H14 S37 37
S37 H15 H15 H 0 1 N N N 37.593 -17.363 6.124 2.551 -1.758 0.802 H15 S37 38
S37 H16 H16 H 0 1 N N N 38.180 -20.102 4.122 3.673 0.993 -1.268 H16 S37 39
S37 H17 H17 H 0 1 N N N 34.834 -18.465 8.569 -0.292 -1.761 2.099 H17 S37 40
S37 H18 H18 H 0 1 N N N 35.252 -18.894 13.432 -3.963 -0.824 -3.058 H18 S37 41
S37 H19 H19 H 0 1 N N N 39.555 -16.643 15.335 -8.400 0.785 0.994 H19 S37 42
S37 H20 H20 H 0 1 N N N 35.500 -16.582 4.143 5.899 -2.854 0.835 H20 S37 43
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S37 O8 C6 DOUB N N 1
S37 C5 C3 SING N N 2
S37 C6 O7 SING N N 3
S37 C6 C1 SING N N 4
S37 C3 N2 SING N N 5
S37 C3 O4 DOUB N N 6
S37 N2 C1 SING N N 7
S37 C1 C9 SING N N 8
S37 C9 C10 SING N N 9
S37 C10 P11 SING N N 10
S37 O12 P11 DOUB N N 11
S37 P11 O13 SING N N 12
S37 P11 C14 SING N N 13
S37 C14 C15 SING N N 14
S37 C15 C16 SING N N 15
S37 C15 C19 SING N N 16
S37 O17 C16 DOUB N N 17
S37 C16 O18 SING N N 18
S37 C20 C19 SING N N 19
S37 C20 C21 SING N N 20
S37 C21 O22 DOUB N N 21
S37 C21 O23 SING N N 22
S37 C1 H1 SING N N 23
S37 C10 H2 SING N N 24
S37 C10 H3 SING N N 25
S37 C14 H4 SING N N 26
S37 C14 H5 SING N N 27
S37 C15 H6 SING N N 28
S37 C19 H7 SING N N 29
S37 C19 H8 SING N N 30
S37 C20 H9 SING N N 31
S37 C20 H10 SING N N 32
S37 C5 H11 SING N N 33
S37 C5 H12 SING N N 34
S37 C5 H13 SING N N 35
S37 C9 H14 SING N N 36
S37 C9 H15 SING N N 37
S37 N2 H16 SING N N 38
S37 O13 H17 SING N N 39
S37 O18 H18 SING N N 40
S37 O23 H19 SING N N 41
S37 O7 H20 SING N N 42
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S37 InChI InChI 1.03 "InChI=1S/C12H20NO9P/c1-7(14)13-9(12(19)20)4-5-23(21,22)6-8(11(17)18)2-3-10(15)16/h8-9H,2-6H2,1H3,(H,13,14)(H,15,16)(H,17,18)(H,19,20)(H,21,22)/t8-,9+/m1/s1"
S37 InChIKey InChI 1.03 PTZXXIYPZPFQTH-BDAKNGLRSA-N
S37 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](CC[P](O)(=O)C[C@@H](CCC(O)=O)C(O)=O)C(O)=O"
S37 SMILES CACTVS 3.385 "CC(=O)N[CH](CC[P](O)(=O)C[CH](CCC(O)=O)C(O)=O)C(O)=O"
S37 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CCP(=O)(C[C@@H](CCC(=O)O)C(=O)O)O)C(=O)O"
S37 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CCP(=O)(CC(CCC(=O)O)C(=O)O)O)C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id S37
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[[(3~{S})-3-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-oxidanyl-phosphoryl]methyl]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S37 "Create component" 2020-03-03 RCSB
S37 "Initial release" 2020-08-12 RCSB
##