data_S3A
#
_chem_comp.id S3A
_chem_comp.name "(2~{S})-2-[[[(3~{R})-3-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H21 N O12 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-03
_chem_comp.pdbx_modified_date 2020-08-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 433.242
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S3A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6VZV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S3A C1 C1 C 0 1 N N R 11.946 -18.543 13.209 3.159 -1.363 0.166 C1 S3A 1
S3A C10 C2 C 0 1 N N N 12.043 -18.797 10.665 0.981 -0.139 0.121 C10 S3A 2
S3A C14 C3 C 0 1 N N N 12.283 -19.255 7.723 -1.664 1.218 -0.031 C14 S3A 3
S3A C15 C4 C 0 1 N N S 13.003 -20.108 6.687 -2.393 -0.083 -0.369 C15 S3A 4
S3A C16 C5 C 0 1 N N N 13.594 -19.258 5.598 -2.771 -0.084 -1.828 C16 S3A 5
S3A C19 C6 C 0 1 N N N 11.995 -21.057 6.063 -3.658 -0.196 0.485 C19 S3A 6
S3A C20 C7 C 0 1 N N N 12.687 -22.053 5.142 -4.321 -1.553 0.238 C20 S3A 7
S3A C21 C8 C 0 1 N N N 11.640 -23.030 4.678 -5.566 -1.663 1.080 C21 S3A 8
S3A C3 C9 C 0 1 N N N 9.567 -18.002 13.149 2.696 -3.657 0.843 C3 S3A 9
S3A C5 C10 C 0 1 N N N 8.171 -18.514 13.354 2.025 -4.990 0.630 C5 S3A 10
S3A C6 C11 C 0 1 N N N 12.681 -18.921 14.466 4.554 -1.407 -0.402 C6 S3A 11
S3A C9 C12 C 0 1 N N N 12.592 -19.250 12.017 2.356 -0.268 -0.539 C9 S3A 12
S3A N2 N1 N 0 1 N N N 10.541 -18.899 13.297 2.507 -2.658 -0.041 N2 S3A 13
S3A O12 O1 O 0 1 N N N 14.366 -19.889 9.476 0.741 2.588 -0.491 O12 S3A 14
S3A O13 O2 O 0 1 N N N 12.269 -21.235 9.550 -0.043 0.873 -2.168 O13 S3A 15
S3A O17 O3 O 0 1 N N N 14.710 -19.582 5.132 -3.039 0.956 -2.383 O17 S3A 16
S3A O18 O4 O 0 1 N N N 12.948 -18.271 5.187 -2.809 -1.238 -2.511 O18 S3A 17
S3A O22 O5 O 0 1 N N N 11.132 -23.812 5.509 -6.315 -2.776 1.026 O22 S3A 18
S3A O23 O6 O 0 1 N N N 11.290 -22.998 3.481 -5.890 -0.751 1.802 O23 S3A 19
S3A O25 O7 O 0 1 N N N 14.883 -17.755 8.139 1.431 2.653 1.936 O25 S3A 20
S3A O26 O8 O 0 1 N N N 16.719 -19.127 9.014 2.186 4.564 0.470 O26 S3A 21
S3A O27 O9 O 0 1 N N N 15.312 -17.809 10.577 -0.329 4.302 1.191 O27 S3A 22
S3A O4 O10 O 0 1 N N N 9.792 -16.838 12.861 3.407 -3.484 1.811 O4 S3A 23
S3A O7 O11 O 0 1 N N N 12.503 -20.064 14.946 4.962 -2.416 -0.926 O7 S3A 24
S3A O8 O12 O 0 1 N N N 13.452 -18.086 14.990 5.344 -0.324 -0.326 O8 S3A 25
S3A P11 P1 P 0 1 N N S 12.759 -19.847 9.369 0.024 1.165 -0.719 P11 S3A 26
S3A P24 P2 P 0 1 N N N 15.329 -18.610 9.299 1.016 3.508 0.802 P24 S3A 27
S3A H1 H1 H 0 1 N N N 12.039 -17.457 13.060 3.208 -1.147 1.234 H1 S3A 28
S3A H2 H2 H 0 1 N N N 12.319 -17.747 10.486 0.450 -1.088 0.043 H2 S3A 29
S3A H3 H3 H 0 1 N N N 10.947 -18.895 10.658 1.106 0.122 1.173 H3 S3A 30
S3A H4 H4 H 0 1 N N N 12.576 -18.201 7.607 -2.205 2.060 -0.462 H4 S3A 31
S3A H5 H5 H 0 1 N N N 11.195 -19.350 7.593 -1.612 1.335 1.051 H5 S3A 32
S3A H6 H6 H 0 1 N N N 13.798 -20.688 7.178 -1.739 -0.931 -0.163 H6 S3A 33
S3A H7 H7 H 0 1 N N N 11.265 -20.476 5.481 -3.394 -0.107 1.539 H7 S3A 34
S3A H8 H8 H 0 1 N N N 11.474 -21.606 6.862 -4.351 0.601 0.215 H8 S3A 35
S3A H9 H9 H 0 1 N N N 13.481 -22.583 5.688 -4.585 -1.642 -0.815 H9 S3A 36
S3A H10 H10 H 0 1 N N N 13.123 -21.529 4.279 -3.628 -2.350 0.508 H10 S3A 37
S3A H11 H11 H 0 1 N N N 7.453 -17.694 13.204 2.675 -5.634 0.039 H11 S3A 38
S3A H12 H12 H 0 1 N N N 7.966 -19.318 12.631 1.830 -5.457 1.595 H12 S3A 39
S3A H13 H13 H 0 1 N N N 8.071 -18.906 14.377 1.083 -4.841 0.102 H13 S3A 40
S3A H14 H14 H 0 1 N N N 12.418 -20.331 12.118 2.887 0.680 -0.460 H14 S3A 41
S3A H15 H15 H 0 1 N N N 13.673 -19.049 12.038 2.231 -0.529 -1.590 H15 S3A 42
S3A H16 H16 H 0 1 N N N 10.296 -19.852 13.475 1.938 -2.796 -0.814 H16 S3A 43
S3A H17 H17 H 0 1 N N N 13.435 -17.839 4.495 -3.057 -1.188 -3.445 H17 S3A 44
S3A H18 H18 H 0 1 N N N 10.471 -24.343 5.081 -7.105 -2.801 1.584 H18 S3A 45
S3A H19 H19 H 0 1 N N N 17.011 -18.804 8.170 2.405 5.152 1.206 H19 S3A 46
S3A H20 H20 H 0 1 N N N 15.022 -16.923 10.392 -0.701 4.825 0.468 H20 S3A 47
S3A H21 H21 H 0 1 N N N 13.847 -18.463 15.767 6.231 -0.400 -0.704 H21 S3A 48
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S3A O23 C21 DOUB N N 1
S3A C21 C20 SING N N 2
S3A C21 O22 SING N N 3
S3A O17 C16 DOUB N N 4
S3A C20 C19 SING N N 5
S3A O18 C16 SING N N 6
S3A C16 C15 SING N N 7
S3A C19 C15 SING N N 8
S3A C15 C14 SING N N 9
S3A C14 P11 SING N N 10
S3A O25 P24 DOUB N N 11
S3A O26 P24 SING N N 12
S3A P24 O12 SING N N 13
S3A P24 O27 SING N N 14
S3A P11 O12 SING N N 15
S3A P11 O13 DOUB N N 16
S3A P11 C10 SING N N 17
S3A C10 C9 SING N N 18
S3A C9 C1 SING N N 19
S3A O4 C3 DOUB N N 20
S3A C3 N2 SING N N 21
S3A C3 C5 SING N N 22
S3A C1 N2 SING N N 23
S3A C1 C6 SING N N 24
S3A C6 O7 DOUB N N 25
S3A C6 O8 SING N N 26
S3A C1 H1 SING N N 27
S3A C10 H2 SING N N 28
S3A C10 H3 SING N N 29
S3A C14 H4 SING N N 30
S3A C14 H5 SING N N 31
S3A C15 H6 SING N N 32
S3A C19 H7 SING N N 33
S3A C19 H8 SING N N 34
S3A C20 H9 SING N N 35
S3A C20 H10 SING N N 36
S3A C5 H11 SING N N 37
S3A C5 H12 SING N N 38
S3A C5 H13 SING N N 39
S3A C9 H14 SING N N 40
S3A C9 H15 SING N N 41
S3A N2 H16 SING N N 42
S3A O18 H17 SING N N 43
S3A O22 H18 SING N N 44
S3A O26 H19 SING N N 45
S3A O27 H20 SING N N 46
S3A O8 H21 SING N N 47
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S3A InChI InChI 1.03 "InChI=1S/C12H21NO12P2/c1-7(14)13-9(12(19)20)4-5-26(21,25-27(22,23)24)6-8(11(17)18)2-3-10(15)16/h8-9H,2-6H2,1H3,(H,13,14)(H,15,16)(H,17,18)(H,19,20)(H2,22,23,24)/t8-,9-,26+/m1/s1"
S3A InChIKey InChI 1.03 GAWJDXYZTLOFMC-UXDGFGRTSA-N
S3A SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@H](CC[P@@](=O)(C[C@@H](CCC(O)=O)C(O)=O)O[P](O)(O)=O)C(O)=O"
S3A SMILES CACTVS 3.385 "CC(=O)N[CH](CC[P](=O)(C[CH](CCC(O)=O)C(O)=O)O[P](O)(O)=O)C(O)=O"
S3A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@H](CC[P@@](=O)(C[C@@H](CCC(=O)O)C(=O)O)OP(=O)(O)O)C(=O)O"
S3A SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CCP(=O)(CC(CCC(=O)O)C(=O)O)OP(=O)(O)O)C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id S3A
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[[(3~{R})-3-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S3A "Create component" 2020-03-03 RCSB
S3A "Initial release" 2020-08-12 RCSB
##