data_S3W # _chem_comp.id S3W _chem_comp.name "N-[(2R,3R,4S,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]-N'-[(1-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-methoxytetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]butanediamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H33 N5 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-12-18 _chem_comp.pdbx_modified_date 2020-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 535.502 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S3W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VAW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S3W N5 N1 N 0 1 Y N N 63.214 31.974 3.380 3.323 1.361 0.354 N5 S3W 1 S3W N4 N2 N 0 1 Y N N 63.588 33.060 2.747 4.372 0.712 0.723 N4 S3W 2 S3W N3 N3 N 0 1 Y N N 64.906 32.939 2.507 4.470 -0.387 0.061 N3 S3W 3 S3W N1 N4 N 0 1 N N N 64.198 27.342 9.775 -5.895 0.644 -0.486 N1 S3W 4 S3W N2 N5 N 0 1 N N N 65.094 29.696 5.214 0.269 0.629 -0.514 N2 S3W 5 S3W C17 C1 C 0 1 N N S 66.253 36.259 2.580 7.996 -1.772 0.040 C17 S3W 6 S3W C16 C2 C 0 1 N N S 67.278 37.042 3.391 9.359 -1.085 -0.093 C16 S3W 7 S3W C18 C3 C 0 1 N N R 66.537 34.763 2.673 6.893 -0.711 0.013 C18 S3W 8 S3W C14 C4 C 0 1 N N S 68.855 35.131 3.064 8.351 0.937 0.968 C14 S3W 9 S3W C15 C5 C 0 1 N N R 68.696 36.645 3.002 9.512 -0.058 1.033 C15 S3W 10 S3W C20 C6 C 0 1 N N N 69.160 33.406 4.632 7.498 2.751 -0.346 C20 S3W 11 S3W C11 C7 C 0 1 N N N 64.157 29.787 4.113 1.425 1.049 -1.310 C11 S3W 12 S3W C12 C8 C 0 1 Y N N 64.288 31.155 3.528 2.694 0.662 -0.597 C12 S3W 13 S3W C13 C9 C 0 1 Y N N 65.369 31.782 2.988 3.423 -0.462 -0.793 C13 S3W 14 S3W C19 C10 C 0 1 N N N 65.636 33.958 1.757 5.533 -1.384 0.205 C19 S3W 15 S3W C4 C11 C 0 1 N N R 62.123 23.718 10.498 -9.808 -0.616 0.443 C4 S3W 16 S3W C3 C12 C 0 1 N N S 62.971 24.295 11.627 -9.401 0.773 0.945 C3 S3W 17 S3W C5 C13 C 0 1 N N S 62.761 24.059 9.151 -8.619 -1.570 0.584 C5 S3W 18 S3W C1 C14 C 0 1 N N R 63.923 25.961 10.034 -7.050 0.224 0.310 C1 S3W 19 S3W C2 C15 C 0 1 N N R 63.250 25.776 11.391 -8.176 1.250 0.158 C2 S3W 20 S3W C6 C16 C 0 1 N N N 62.199 23.499 7.866 -8.998 -2.944 0.030 C6 S3W 21 S3W C7 C17 C 0 1 N N N 65.210 27.762 9.007 -4.646 0.401 -0.042 C7 S3W 22 S3W C8 C18 C 0 1 N N N 65.367 29.263 8.893 -3.457 0.833 -0.862 C8 S3W 23 S3W C9 C19 C 0 1 N N N 65.823 29.717 7.510 -2.168 0.440 -0.138 C9 S3W 24 S3W C10 C20 C 0 1 N N N 64.707 29.720 6.490 -0.980 0.872 -0.957 C10 S3W 25 S3W O18 O1 O 0 1 N N N 67.884 34.501 2.251 7.113 0.229 1.066 O18 S3W 26 S3W O14 O2 O 0 1 N N N 68.724 34.737 4.398 8.398 1.644 -0.273 O14 S3W 27 S3W O15 O3 O 0 1 N N N 69.633 37.266 3.874 10.749 0.641 0.877 O15 S3W 28 S3W O16 O4 O 0 1 N N N 67.094 38.438 3.185 10.398 -2.061 0.003 O16 S3W 29 S3W O17 O5 O 0 1 N N N 64.944 36.515 3.078 7.812 -2.681 -1.047 O17 S3W 30 S3W O5 O6 O 0 1 N N N 63.060 25.461 8.997 -7.505 -1.052 -0.146 O5 S3W 31 S3W O2 O7 O 0 1 N N N 64.098 26.283 12.412 -7.744 2.513 0.667 O2 S3W 32 S3W O3 O8 O 0 1 N N N 62.350 24.098 12.889 -10.481 1.687 0.749 O3 S3W 33 S3W O4 O9 O 0 1 N N N 60.787 24.210 10.584 -10.193 -0.533 -0.931 O4 S3W 34 S3W O6 O10 O 0 1 N N N 63.226 23.319 6.897 -7.931 -3.865 0.267 O6 S3W 35 S3W O10 O11 O 0 1 N N N 63.528 29.769 6.831 -1.147 1.440 -2.016 O10 S3W 36 S3W O7 O12 O 0 1 N N N 65.987 26.988 8.455 -4.478 -0.167 1.016 O7 S3W 37 S3W HN1 H1 H 0 1 N N N 63.602 28.029 10.190 -6.029 1.098 -1.333 HN1 S3W 38 S3W HN2 H2 H 0 1 N N N 66.069 29.612 5.009 0.403 0.175 0.333 HN2 S3W 39 S3W HC17 H3 H 0 0 N N N 66.325 36.568 1.527 7.953 -2.318 0.983 HC17 S3W 40 S3W HC16 H4 H 0 0 N N N 67.132 36.803 4.455 9.420 -0.580 -1.057 HC16 S3W 41 S3W HC18 H5 H 0 0 N N N 66.389 34.431 3.711 6.911 -0.193 -0.946 HC18 S3W 42 S3W HC14 H6 H 0 0 N N N 69.861 34.878 2.698 8.432 1.645 1.793 HC14 S3W 43 S3W HC15 H7 H 0 0 N N N 68.877 36.972 1.967 9.501 -0.569 1.996 HC15 S3W 44 S3W H20B H8 H 0 0 N N N 69.031 33.159 5.696 7.737 3.467 0.441 H20B S3W 45 S3W H20C H9 H 0 0 N N N 68.565 32.712 4.020 7.595 3.235 -1.318 H20C S3W 46 S3W H20A H10 H 0 0 N N N 70.222 33.315 4.361 6.475 2.397 -0.216 H20A S3W 47 S3W H11A H11 H 0 0 N N N 63.131 29.631 4.478 1.391 0.561 -2.284 H11A S3W 48 S3W H11B H12 H 0 0 N N N 64.395 29.028 3.353 1.399 2.131 -1.445 H11B S3W 49 S3W HC13 H13 H 0 0 N N N 66.386 31.420 2.955 3.211 -1.259 -1.491 HC13 S3W 50 S3W H19A H14 H 0 0 N N N 66.250 33.468 0.988 5.484 -1.826 1.201 H19A S3W 51 S3W H19B H15 H 0 0 N N N 64.916 34.635 1.275 5.404 -2.164 -0.545 H19B S3W 52 S3W HC4 H16 H 0 1 N N N 62.115 22.623 10.603 -10.645 -0.986 1.034 HC4 S3W 53 S3W HC3 H17 H 0 1 N N N 63.937 23.769 11.619 -9.156 0.720 2.006 HC3 S3W 54 S3W HC5 H18 H 0 1 N N N 63.751 23.585 9.219 -8.351 -1.664 1.637 HC5 S3W 55 S3W HC1 H19 H 0 1 N N N 64.864 25.392 10.034 -6.762 0.153 1.359 HC1 S3W 56 S3W HC2 H20 H 0 1 N N N 62.294 26.319 11.388 -8.437 1.350 -0.896 HC2 S3W 57 S3W HC6B H21 H 0 0 N N N 61.447 24.196 7.468 -9.902 -3.299 0.525 HC6B S3W 58 S3W HC6A H22 H 0 0 N N N 61.726 22.528 8.073 -9.179 -2.866 -1.042 HC6A S3W 59 S3W HC8B H23 H 0 0 N N N 66.111 29.594 9.632 -3.490 0.345 -1.836 HC8B S3W 60 S3W HC8A H24 H 0 0 N N N 64.397 29.733 9.113 -3.483 1.915 -0.996 HC8A S3W 61 S3W HC9B H25 H 0 0 N N N 66.614 29.037 7.161 -2.135 0.928 0.836 HC9B S3W 62 S3W HC9A H26 H 0 0 N N N 66.226 30.737 7.591 -2.142 -0.642 -0.003 HC9A S3W 63 S3W HO15 H27 H 0 0 N N N 69.529 38.209 3.831 10.910 1.311 1.555 HO15 S3W 64 S3W HO16 H28 H 0 0 N N N 67.736 38.921 3.693 11.290 -1.695 -0.073 HO16 S3W 65 S3W HO17 H29 H 0 0 N N N 64.760 37.445 3.023 8.477 -3.381 -1.092 HO17 S3W 66 S3W HO2 H30 H 0 1 N N N 63.680 26.168 13.257 -6.967 2.873 0.217 HO2 S3W 67 S3W HO3 H31 H 0 1 N N N 62.898 24.466 13.573 -10.292 2.588 1.045 HO3 S3W 68 S3W HO4 H32 H 0 1 N N N 60.419 23.983 11.430 -10.939 0.059 -1.095 HO4 S3W 69 S3W HO6 H33 H 0 1 N N N 62.851 22.967 6.099 -8.103 -4.759 -0.059 HO6 S3W 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S3W C19 N3 SING N N 1 S3W C19 C18 SING N N 2 S3W O18 C18 SING N N 3 S3W O18 C14 SING N N 4 S3W N3 N4 SING Y N 5 S3W N3 C13 SING Y N 6 S3W C17 C18 SING N N 7 S3W C17 O17 SING N N 8 S3W C17 C16 SING N N 9 S3W N4 N5 DOUB Y N 10 S3W C13 C12 DOUB Y N 11 S3W C15 C14 SING N N 12 S3W C15 C16 SING N N 13 S3W C15 O15 SING N N 14 S3W C14 O14 SING N N 15 S3W O16 C16 SING N N 16 S3W N5 C12 SING Y N 17 S3W C12 C11 SING N N 18 S3W C11 N2 SING N N 19 S3W O14 C20 SING N N 20 S3W N2 C10 SING N N 21 S3W C10 O10 DOUB N N 22 S3W C10 C9 SING N N 23 S3W O6 C6 SING N N 24 S3W C9 C8 SING N N 25 S3W C6 C5 SING N N 26 S3W O7 C7 DOUB N N 27 S3W C8 C7 SING N N 28 S3W O5 C5 SING N N 29 S3W O5 C1 SING N N 30 S3W C7 N1 SING N N 31 S3W C5 C4 SING N N 32 S3W N1 C1 SING N N 33 S3W C1 C2 SING N N 34 S3W C4 O4 SING N N 35 S3W C4 C3 SING N N 36 S3W C2 C3 SING N N 37 S3W C2 O2 SING N N 38 S3W C3 O3 SING N N 39 S3W N1 HN1 SING N N 40 S3W N2 HN2 SING N N 41 S3W C17 HC17 SING N N 42 S3W C16 HC16 SING N N 43 S3W C18 HC18 SING N N 44 S3W C14 HC14 SING N N 45 S3W C15 HC15 SING N N 46 S3W C20 H20B SING N N 47 S3W C20 H20C SING N N 48 S3W C20 H20A SING N N 49 S3W C11 H11A SING N N 50 S3W C11 H11B SING N N 51 S3W C13 HC13 SING N N 52 S3W C19 H19A SING N N 53 S3W C19 H19B SING N N 54 S3W C4 HC4 SING N N 55 S3W C3 HC3 SING N N 56 S3W C5 HC5 SING N N 57 S3W C1 HC1 SING N N 58 S3W C2 HC2 SING N N 59 S3W C6 HC6B SING N N 60 S3W C6 HC6A SING N N 61 S3W C8 HC8B SING N N 62 S3W C8 HC8A SING N N 63 S3W C9 HC9B SING N N 64 S3W C9 HC9A SING N N 65 S3W O15 HO15 SING N N 66 S3W O16 HO16 SING N N 67 S3W O17 HO17 SING N N 68 S3W O2 HO2 SING N N 69 S3W O3 HO3 SING N N 70 S3W O4 HO4 SING N N 71 S3W O6 HO6 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S3W SMILES ACDLabs 12.01 "n2c(CNC(CCC(NC1C(C(C(O)C(CO)O1)O)O)=O)=O)cn(n2)CC3C(O)C(C(C(OC)O3)O)O" S3W InChI InChI 1.03 "InChI=1S/C20H33N5O12/c1-35-20-18(34)16(32)13(29)9(37-20)6-25-5-8(23-24-25)4-21-11(27)2-3-12(28)22-19-17(33)15(31)14(30)10(7-26)36-19/h5,9-10,13-20,26,29-34H,2-4,6-7H2,1H3,(H,21,27)(H,22,28)/t9-,10+,13-,14+,15+,16+,17-,18-,19-,20+/m1/s1" S3W InChIKey InChI 1.03 ZVODTTTYSJJUKY-SRYZRXLVSA-N S3W SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1O[C@H](Cn2cc(CNC(=O)CCC(=O)N[C@@H]3O[C@@H](CO)[C@H](O)[C@H](O)[C@H]3O)nn2)[C@@H](O)[C@H](O)[C@H]1O" S3W SMILES CACTVS 3.385 "CO[CH]1O[CH](Cn2cc(CNC(=O)CCC(=O)N[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)nn2)[CH](O)[CH](O)[CH]1O" S3W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)Cn2cc(nn2)CNC(=O)CCC(=O)N[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O)O)O" S3W SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(C(O1)Cn2cc(nn2)CNC(=O)CCC(=O)NC3C(C(C(C(O3)CO)O)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S3W "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2R,3R,4S,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]-N'-[(1-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-methoxytetrahydro-2H-pyran-2-yl]methyl}-1H-1,2,3-triazol-4-yl)methyl]butanediamide (non-preferred name)" S3W "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}'-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-~{N}-[[1-[[(2~{R},3~{S},4~{S},5~{R},6~{S})-6-methoxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl]-1,2,3-triazol-4-yl]methyl]butanediamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S3W "Create component" 2019-12-18 RCSB S3W "Initial release" 2020-10-28 RCSB ##