data_S3X # _chem_comp.id S3X _chem_comp.name "(4S)-6-chloro-N-(isoquinolin-4-yl)-2-(2-{[(1S)-1-(4-nitrophenyl)ethyl]amino}-2-oxoethyl)-1,2,3,4-tetrahydroisoquinoline-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H26 Cl N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-22 _chem_comp.pdbx_modified_date 2024-01-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 544.001 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S3X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GNO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S3X N1 N1 N 0 1 N N N N N N -20.288 8.775 30.698 3.546 -0.444 -0.253 N1 S3X 1 S3X N3 N2 N 0 1 N N N N N N -20.289 4.816 26.956 -3.868 -0.380 -0.483 N3 S3X 2 S3X C4 C1 C 0 1 Y N N N N N -16.642 11.562 29.232 7.621 -1.044 -0.866 C4 S3X 3 S3X C5 C2 C 0 1 Y N N N N N -17.805 9.049 29.218 6.673 -0.006 1.515 C5 S3X 4 S3X C6 C3 C 0 1 Y N N N N N -16.858 9.368 28.262 8.020 0.074 1.214 C6 S3X 5 S3X C7 C4 C 0 1 Y N N N N N -16.286 10.621 28.292 8.494 -0.445 0.023 C7 S3X 6 S3X C8 C5 C 0 1 N N N N N N -21.312 9.311 30.023 2.285 0.020 -0.151 C8 S3X 7 S3X C10 C6 C 0 1 N N N N N N -22.605 6.151 28.516 -0.752 0.819 -2.184 C10 S3X 8 S3X C13 C7 C 0 1 Y N N N N N -19.005 4.899 26.381 -4.308 -1.586 0.065 C13 S3X 9 S3X C15 C8 C 0 1 Y N N N N N -16.435 5.062 25.411 -5.074 -3.990 1.186 C15 S3X 10 S3X C17 C9 C 0 1 Y N N N N N -16.723 7.494 24.954 -7.383 -3.636 0.425 C17 S3X 11 S3X C20 C10 C 0 1 Y N N N N N -19.324 7.349 25.922 -6.612 -1.199 -0.713 C20 S3X 12 S3X C21 C11 C 0 1 Y N N N N N -18.533 6.171 25.931 -5.658 -1.983 -0.051 C21 S3X 13 S3X C22 C12 C 0 1 N N N N N N -22.782 6.437 30.895 0.235 2.104 -0.400 C22 S3X 14 S3X C24 C13 C 0 1 Y N N N N N -22.709 4.377 32.336 -1.261 3.690 0.795 C24 S3X 15 S3X C26 C14 C 0 1 Y N N N N N -22.367 4.109 29.962 -2.268 2.126 -0.709 C26 S3X 16 S3X C28 C15 C 0 1 Y N N N N N -22.425 2.201 31.423 -3.632 3.702 0.483 C28 S3X 17 S3X O3 O1 O 0 1 N N N N N N -21.423 10.523 29.855 1.801 0.227 0.942 O3 S3X 18 S3X C1 C16 C 0 1 N N S N N N -19.204 9.599 31.248 4.333 -0.698 0.957 C1 S3X 19 S3X C2 C17 C 0 1 Y N N N N N -18.173 9.961 30.196 5.801 -0.611 0.628 C2 S3X 20 S3X N N3 N 1 1 N N N N N N -15.230 10.947 27.319 9.936 -0.359 -0.299 N S3X 21 S3X O1 O2 O -1 1 N N N N N N -14.679 12.032 27.406 10.705 0.169 0.484 O1 S3X 22 S3X O O3 O 0 1 N N N N N N -14.946 10.115 26.471 10.353 -0.816 -1.348 O S3X 23 S3X C3 C18 C 0 1 Y N N N N N -17.581 11.218 30.187 6.274 -1.125 -0.564 C3 S3X 24 S3X C C19 C 0 1 N N N N N N -18.587 8.910 32.461 4.012 -2.096 1.490 C S3X 25 S3X C9 C20 C 0 1 N N N N N N -22.362 8.364 29.463 1.475 0.281 -1.395 C9 S3X 26 S3X N2 N4 N 0 1 N N N N N N -22.139 6.933 29.666 0.145 0.777 -1.018 N2 S3X 27 S3X C23 C21 C 0 1 Y N N N N N -22.611 4.944 31.065 -1.141 2.643 -0.107 C23 S3X 28 S3X C27 C22 C 0 1 Y N N N N N -22.305 2.727 30.151 -3.514 2.658 -0.414 C27 S3X 29 S3X CL CL1 CL 0 0 N N N N N N -22.349 0.469 31.637 -5.195 4.364 0.848 CL S3X 30 S3X C25 C23 C 0 1 Y N N N N N -22.607 3.010 32.522 -2.501 4.219 1.090 C25 S3X 31 S3X C11 C24 C 0 1 N N S N N N -22.084 4.713 28.595 -2.188 0.981 -1.686 C11 S3X 32 S3X C12 C25 C 0 1 N N N N N N -20.588 4.699 28.269 -2.628 -0.289 -1.005 C12 S3X 33 S3X O2 O4 O 0 1 N N N N N N -19.727 4.640 29.141 -1.867 -1.230 -0.927 O2 S3X 34 S3X C19 C26 C 0 1 Y N N N N N -18.825 8.527 25.440 -7.900 -1.635 -0.792 C19 S3X 35 S3X C18 C27 C 0 1 Y N N N N N -17.527 8.598 24.955 -8.283 -2.849 -0.225 C18 S3X 36 S3X C16 C28 C 0 1 Y N N N N N -17.205 6.251 25.433 -6.046 -3.219 0.527 C16 S3X 37 S3X N4 N5 N 0 1 Y N N N N N -16.880 3.880 25.820 -3.833 -3.568 1.256 N4 S3X 38 S3X C14 C29 C 0 1 Y N N N N N -18.132 3.819 26.289 -3.433 -2.421 0.729 C14 S3X 39 S3X H1 H1 H 0 1 N N N N N N -20.260 7.784 30.832 3.932 -0.613 -1.127 H1 S3X 40 S3X H2 H2 H 0 1 N N N N N N -21.063 4.847 26.324 -4.454 0.393 -0.489 H2 S3X 41 S3X H3 H3 H 0 1 N N N N N N -16.198 12.546 29.224 7.991 -1.446 -1.798 H3 S3X 42 S3X H4 H4 H 0 1 N N N N N N -18.266 8.073 29.203 6.302 0.403 2.443 H4 S3X 43 S3X H5 H5 H 0 1 N N N N N N -16.573 8.650 27.508 8.701 0.543 1.908 H5 S3X 44 S3X H6 H6 H 0 1 N N N N N N -22.239 6.618 27.589 -0.487 1.664 -2.820 H6 S3X 45 S3X H7 H7 H 0 1 N N N N N N -23.705 6.137 28.510 -0.663 -0.109 -2.748 H7 S3X 46 S3X H8 H8 H 0 1 N N N N N N -15.423 5.121 25.038 -5.348 -4.934 1.634 H8 S3X 47 S3X H9 H9 H 0 1 N N N N N N -15.711 7.569 24.585 -7.694 -4.574 0.860 H9 S3X 48 S3X H10 H10 H 0 1 N N N N N N -20.335 7.315 26.301 -6.328 -0.256 -1.156 H10 S3X 49 S3X H11 H11 H 0 1 N N N N N N -22.333 6.946 31.760 0.798 2.030 0.531 H11 S3X 50 S3X H12 H12 H 0 1 N N N N N N -23.857 6.668 30.851 0.751 2.781 -1.080 H12 S3X 51 S3X H13 H13 H 0 1 N N N N N N -22.868 5.018 33.191 -0.379 4.094 1.269 H13 S3X 52 S3X H14 H14 H 0 1 N N N N N N -19.648 10.541 31.604 4.085 0.045 1.714 H14 S3X 53 S3X H15 H15 H 0 1 N N N N N N -17.860 11.940 30.940 5.592 -1.589 -1.261 H15 S3X 54 S3X H16 H16 H 0 1 N N N N N N -19.377 8.671 33.189 4.260 -2.839 0.732 H16 S3X 55 S3X H17 H17 H 0 1 N N N N N N -18.090 7.982 32.142 4.597 -2.285 2.389 H17 S3X 56 S3X H18 H18 H 0 1 N N N N N N -17.849 9.580 32.927 2.950 -2.159 1.727 H18 S3X 57 S3X H19 H19 H 0 1 N N N N N N -22.424 8.540 28.379 1.982 1.027 -2.008 H19 S3X 58 S3X H20 H20 H 0 1 N N N N N N -23.324 8.620 29.931 1.371 -0.644 -1.962 H20 S3X 59 S3X H22 H22 H 0 1 N N N N N N -22.164 2.071 29.305 -4.396 2.255 -0.889 H22 S3X 60 S3X H23 H23 H 0 1 N N N N N N -22.669 2.585 33.513 -2.589 5.033 1.794 H23 S3X 61 S3X H24 H24 H 0 1 N N N N N N -22.608 4.114 27.836 -2.844 1.182 -2.533 H24 S3X 62 S3X H25 H25 H 0 1 N N N N N N -19.447 9.410 25.437 -8.636 -1.031 -1.302 H25 S3X 63 S3X H26 H26 H 0 1 N N N N N N -17.149 9.535 24.575 -9.311 -3.171 -0.303 H26 S3X 64 S3X H27 H27 H 0 1 N N N N N N -18.493 2.857 26.622 -2.396 -2.132 0.821 H27 S3X 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S3X C17 C18 DOUB Y N 1 S3X C17 C16 SING Y N 2 S3X C18 C19 SING Y N 3 S3X C15 C16 DOUB Y N 4 S3X C15 N4 SING Y N 5 S3X C16 C21 SING Y N 6 S3X C19 C20 DOUB Y N 7 S3X N4 C14 DOUB Y N 8 S3X C20 C21 SING Y N 9 S3X C21 C13 DOUB Y N 10 S3X C14 C13 SING Y N 11 S3X C13 N3 SING N N 12 S3X O N DOUB N N 13 S3X N3 C12 SING N N 14 S3X N O1 SING N N 15 S3X N C7 SING N N 16 S3X C6 C7 DOUB Y N 17 S3X C6 C5 SING Y N 18 S3X C12 C11 SING N N 19 S3X C12 O2 DOUB N N 20 S3X C7 C4 SING Y N 21 S3X C10 C11 SING N N 22 S3X C10 N2 SING N N 23 S3X C11 C26 SING N N 24 S3X C5 C2 DOUB Y N 25 S3X C4 C3 DOUB Y N 26 S3X C9 N2 SING N N 27 S3X C9 C8 SING N N 28 S3X N2 C22 SING N N 29 S3X O3 C8 DOUB N N 30 S3X C26 C27 DOUB Y N 31 S3X C26 C23 SING Y N 32 S3X C8 N1 SING N N 33 S3X C27 C28 SING Y N 34 S3X C3 C2 SING Y N 35 S3X C2 C1 SING N N 36 S3X N1 C1 SING N N 37 S3X C22 C23 SING N N 38 S3X C23 C24 DOUB Y N 39 S3X C1 C SING N N 40 S3X C28 CL SING N N 41 S3X C28 C25 DOUB Y N 42 S3X C24 C25 SING Y N 43 S3X N1 H1 SING N N 44 S3X N3 H2 SING N N 45 S3X C4 H3 SING N N 46 S3X C5 H4 SING N N 47 S3X C6 H5 SING N N 48 S3X C10 H6 SING N N 49 S3X C10 H7 SING N N 50 S3X C15 H8 SING N N 51 S3X C17 H9 SING N N 52 S3X C20 H10 SING N N 53 S3X C22 H11 SING N N 54 S3X C22 H12 SING N N 55 S3X C24 H13 SING N N 56 S3X C1 H14 SING N N 57 S3X C3 H15 SING N N 58 S3X C H16 SING N N 59 S3X C H17 SING N N 60 S3X C H18 SING N N 61 S3X C9 H19 SING N N 62 S3X C9 H20 SING N N 63 S3X C27 H22 SING N N 64 S3X C25 H23 SING N N 65 S3X C11 H24 SING N N 66 S3X C19 H25 SING N N 67 S3X C18 H26 SING N N 68 S3X C14 H27 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S3X SMILES ACDLabs 12.01 "[O-][N+](=O)c1ccc(cc1)C(C)NC(=O)CN1Cc2ccc(Cl)cc2C(C1)C(=O)Nc1cncc2ccccc21" S3X InChI InChI 1.06 "InChI=1S/C29H26ClN5O4/c1-18(19-7-10-23(11-8-19)35(38)39)32-28(36)17-34-15-21-6-9-22(30)12-25(21)26(16-34)29(37)33-27-14-31-13-20-4-2-3-5-24(20)27/h2-14,18,26H,15-17H2,1H3,(H,32,36)(H,33,37)/t18-,26+/m0/s1" S3X InChIKey InChI 1.06 NSMAAPODQLIULZ-HFJWLAOPSA-N S3X SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)CN1C[C@@H](C(=O)Nc2cncc3ccccc23)c4cc(Cl)ccc4C1)c5ccc(cc5)[N+]([O-])=O" S3X SMILES CACTVS 3.385 "C[CH](NC(=O)CN1C[CH](C(=O)Nc2cncc3ccccc23)c4cc(Cl)ccc4C1)c5ccc(cc5)[N+]([O-])=O" S3X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccc(cc1)[N+](=O)[O-])NC(=O)CN2Cc3ccc(cc3[C@@H](C2)C(=O)Nc4cncc5c4cccc5)Cl" S3X SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccc(cc1)[N+](=O)[O-])NC(=O)CN2Cc3ccc(cc3C(C2)C(=O)Nc4cncc5c4cccc5)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S3X "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-6-chloro-N-(isoquinolin-4-yl)-2-(2-{[(1S)-1-(4-nitrophenyl)ethyl]amino}-2-oxoethyl)-1,2,3,4-tetrahydroisoquinoline-4-carboxamide" S3X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S})-6-chloranyl-~{N}-isoquinolin-4-yl-2-[2-[[(1~{S})-1-(4-nitrophenyl)ethyl]amino]-2-oxidanylidene-ethyl]-3,4-dihydro-1~{H}-isoquinoline-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S3X "Create component" 2023-08-22 RCSB S3X "Initial release" 2023-11-08 RCSB S3X "Modify charge" 2024-01-23 RCSB #