data_S49 # _chem_comp.id S49 _chem_comp.name "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[(2R)-3-phenyl-2-[(phenylmethyl)sulfonylamino]propanoyl]pyrrolidine-2-carboxamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H33 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-03-23 _chem_comp.pdbx_modified_date 2020-09-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 547.668 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S49 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4UFD _chem_comp.pdbx_subcomponent_list "PMS PRO DPN 00S" _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S49 C7 C7 C 0 1 N N N 14.935 -15.298 21.371 4.390 -1.000 -0.237 C PMS 1 S49 S8 S8 S 0 1 N N N 15.601 -16.601 22.194 3.171 -1.156 1.098 S PMS 2 S49 C4 C4 C 0 1 Y N N 13.931 -15.711 20.317 4.925 -2.364 -0.591 C1 PMS 3 S49 C5 C5 C 0 1 Y N N 14.352 -16.110 19.050 4.299 -3.121 -1.563 C2 PMS 4 S49 C6 C6 C 0 1 Y N N 13.413 -16.490 18.091 4.790 -4.372 -1.887 C3 PMS 5 S49 C1 C1 C 0 1 Y N N 12.056 -16.465 18.396 5.907 -4.866 -1.239 C4 PMS 6 S49 C2 C2 C 0 1 Y N N 11.638 -16.059 19.660 6.533 -4.108 -0.267 C5 PMS 7 S49 C3 C3 C 0 1 Y N N 12.572 -15.678 20.619 6.045 -2.855 0.054 C6 PMS 8 S49 O12 O12 O 0 1 N N N 16.482 -17.338 21.340 1.963 -1.721 0.607 O2S PMS 9 S49 O13 O13 O 0 1 N N N 14.524 -17.368 22.749 3.786 -1.654 2.278 O1S PMS 10 S49 N21 N21 N 0 1 N N N 18.584 -13.778 21.747 -0.196 1.933 -0.108 N PRO 11 S49 C22 C22 C 0 1 N N S 18.510 -12.458 21.115 -1.661 1.993 -0.005 CA PRO 12 S49 C26 C26 C 0 1 N N N 17.219 -12.276 20.371 -2.243 0.612 -0.166 C PRO 13 S49 O30 O30 O 0 1 N N N 16.746 -13.193 19.712 -1.511 -0.337 -0.348 O PRO 14 S49 C23 C23 C 0 1 N N N 19.663 -12.416 20.122 -2.162 2.909 -1.142 CB PRO 15 S49 C24 C24 C 0 1 N N N 20.504 -13.651 20.368 -0.998 2.861 -2.166 CG PRO 16 S49 C25 C25 C 0 1 N N N 19.660 -14.608 21.194 0.235 2.784 -1.232 CD PRO 17 S49 N9 N9 N 0 1 N N N 16.437 -16.037 23.448 2.768 0.405 1.474 N DPN 18 S49 C10 C10 C 0 1 N N R 17.764 -15.456 23.326 2.110 1.253 0.477 CA DPN 19 S49 C11 C11 C 0 1 N N N 17.692 -14.098 22.683 0.619 1.222 0.697 C DPN 20 S49 O31 O31 O 0 1 N N N 16.828 -13.307 23.051 0.153 0.558 1.598 O DPN 21 S49 C14 C14 C 0 1 N N N 18.353 -15.350 24.738 2.616 2.690 0.614 CB DPN 22 S49 C15 C15 C 0 1 Y N N 19.760 -14.783 24.763 4.081 2.742 0.263 CG DPN 23 S49 C16 C16 C 0 1 Y N N 19.974 -13.519 25.301 4.471 2.991 -1.040 CD1 DPN 24 S49 C20 C20 C 0 1 Y N N 20.842 -15.510 24.266 5.035 2.547 1.245 CD2 DPN 25 S49 C17 C17 C 0 1 Y N N 21.254 -12.980 25.335 5.814 3.044 -1.361 CE1 DPN 26 S49 C19 C19 C 0 1 Y N N 22.125 -14.966 24.308 6.378 2.601 0.924 CE2 DPN 27 S49 C18 C18 C 0 1 Y N N 22.338 -13.700 24.840 6.768 2.849 -0.379 CZ DPN 28 S49 N27 N27 N 0 1 N N N 16.610 -11.098 20.480 -3.577 0.432 -0.106 N23 00S 29 S49 C28 C28 C 0 1 N N N 15.351 -10.770 19.829 -4.143 -0.910 -0.262 C16 00S 30 S49 C29 C29 C 0 1 Y N N 14.245 -10.776 20.857 -5.645 -0.838 -0.156 C17 00S 31 S49 C33 C33 C 0 1 Y N N 13.914 -9.619 21.546 -6.406 -0.636 -1.293 C22 00S 32 S49 C34 C34 C 0 1 Y N N 12.902 -9.643 22.494 -7.782 -0.568 -1.202 C21 00S 33 S49 C35 C35 C 0 1 Y N N 12.220 -10.815 22.765 -8.403 -0.704 0.039 C24 00S 34 S49 C37 C37 C 0 1 N N N 11.128 -10.813 23.791 -9.879 -0.633 0.143 C27 00S 35 S49 N39 N39 N 0 1 N N N 10.829 -9.731 24.374 -10.599 -0.443 -0.925 N35 00S 36 S49 N38 N38 N 0 1 N N N 10.502 -11.884 24.071 -10.490 -0.769 1.370 N34 00S 37 S49 C36 C36 C 0 1 Y N N 12.551 -11.975 22.075 -7.630 -0.909 1.181 C19 00S 38 S49 C32 C32 C 0 1 Y N N 13.561 -11.950 21.127 -6.256 -0.980 1.077 C18 00S 39 S49 H72C H72C H 0 0 N N N 15.747 -14.741 20.881 3.914 -0.558 -1.113 H2A PMS 40 S49 H71C H71C H 0 0 N N N 14.430 -14.646 22.099 5.209 -0.362 0.092 H1 PMS 41 S49 H5 H5 H 0 1 N N N 15.405 -16.125 18.811 3.427 -2.736 -2.069 H2 PMS 42 S49 H6 H6 H 0 1 N N N 13.740 -16.804 17.111 4.301 -4.964 -2.647 H3 PMS 43 S49 H1 H1 H 0 1 N N N 11.329 -16.760 17.654 6.290 -5.843 -1.492 H4 PMS 44 S49 H2 H2 H 0 1 N N N 10.585 -16.040 19.898 7.406 -4.493 0.239 H5 PMS 45 S49 H3 H3 H 0 1 N N N 12.243 -15.357 21.596 6.536 -2.262 0.811 H6 PMS 46 S49 H22 H22 H 0 1 N N N 18.632 -11.661 21.864 -1.949 2.407 0.961 HA PRO 47 S49 H231 H231 H 0 0 N N N 19.275 -12.422 19.093 -3.078 2.513 -1.581 HB2 PRO 48 S49 H232 H232 H 0 0 N N N 20.266 -11.510 20.282 -2.315 3.925 -0.779 HB3 PRO 49 S49 H241 H241 H 0 0 N N N 20.777 -14.119 19.411 -1.067 1.973 -2.795 HG2 PRO 50 S49 H242 H242 H 0 0 N N N 21.418 -13.382 20.918 -0.973 3.766 -2.772 HG3 PRO 51 S49 H251 H251 H 0 0 N N N 20.259 -15.054 22.002 0.503 3.778 -0.874 HD2 PRO 52 S49 H252 H252 H 0 0 N N N 19.247 -15.406 20.560 1.078 2.328 -1.752 HD3 PRO 53 S49 H9 H9 H 0 1 N N N 15.865 -15.329 23.863 2.968 0.759 2.355 H DPN 54 S49 H10 H10 H 0 1 N N N 18.407 -16.111 22.720 2.337 0.881 -0.522 HA DPN 55 S49 H141 H141 H 0 0 N N N 18.374 -16.356 25.183 2.057 3.338 -0.061 HB2 DPN 56 S49 H142 H142 H 0 0 N N N 17.703 -14.697 25.339 2.477 3.028 1.641 HB3 DPN 57 S49 H16 H16 H 0 1 N N N 19.142 -12.954 25.694 3.726 3.143 -1.807 HD1 DPN 58 S49 H20 H20 H 0 1 N N N 20.686 -16.494 23.849 4.730 2.353 2.262 HD2 DPN 59 S49 H17 H17 H 0 1 N N N 21.409 -11.995 25.749 6.119 3.238 -2.379 HE1 DPN 60 S49 H19 H19 H 0 1 N N N 22.960 -15.533 23.924 7.123 2.448 1.690 HE2 DPN 61 S49 H18 H18 H 0 1 N N N 23.332 -13.280 24.869 7.817 2.891 -0.630 HZ DPN 62 S49 H27 H27 H 0 1 N N N 17.044 -10.395 21.044 -4.163 1.191 0.040 HN23 00S 63 S49 H281 H281 H 0 0 N N N 15.422 -9.772 19.371 -3.867 -1.310 -1.237 H16 00S 64 S49 H282 H282 H 0 0 N N N 15.134 -11.516 19.050 -3.754 -1.561 0.521 H16A 00S 65 S49 H33 H33 H 0 1 N N N 14.444 -8.700 21.345 -5.924 -0.530 -2.253 H22 00S 66 S49 H34 H34 H 0 1 N N N 12.644 -8.739 23.025 -8.375 -0.409 -2.090 H21 00S 67 S49 H39 H39 H 0 1 N N N 10.085 -9.853 25.031 -11.565 -0.396 -0.857 HN35 00S 68 S49 H381 H381 H 0 0 N N N 9.771 -11.872 24.754 -9.954 -0.910 2.166 HN34 00S 69 S49 H382 H382 H 0 0 N N N 10.740 -12.738 23.609 -11.457 -0.722 1.439 HN3A 00S 70 S49 H36 H36 H 0 1 N N N 12.022 -12.894 22.277 -8.106 -1.015 2.145 H19 00S 71 S49 H32 H32 H 0 1 N N N 13.817 -12.854 20.594 -5.656 -1.142 1.961 H18 00S 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S49 C7 S8 SING N N 1 S49 C7 C4 SING N N 2 S49 S8 O12 DOUB N N 3 S49 S8 O13 DOUB N N 4 S49 S8 N9 SING N N 5 S49 C4 C5 SING Y N 6 S49 C4 C3 DOUB Y N 7 S49 C5 C6 DOUB Y N 8 S49 C6 C1 SING Y N 9 S49 C1 C2 DOUB Y N 10 S49 C2 C3 SING Y N 11 S49 C15 C16 SING Y N 12 S49 C15 C20 DOUB Y N 13 S49 C15 C14 SING N N 14 S49 C16 C17 DOUB Y N 15 S49 C17 C18 SING Y N 16 S49 C18 C19 DOUB Y N 17 S49 C19 C20 SING Y N 18 S49 N9 C10 SING N N 19 S49 C10 C14 SING N N 20 S49 C10 C11 SING N N 21 S49 C11 O31 DOUB N N 22 S49 C11 N21 SING N N 23 S49 N21 C22 SING N N 24 S49 N21 C25 SING N N 25 S49 C22 C26 SING N N 26 S49 C22 C23 SING N N 27 S49 C26 O30 DOUB N N 28 S49 C26 N27 SING N N 29 S49 C23 C24 SING N N 30 S49 C24 C25 SING N N 31 S49 N27 C28 SING N N 32 S49 C28 C29 SING N N 33 S49 C29 C33 SING Y N 34 S49 C29 C32 DOUB Y N 35 S49 C33 C34 DOUB Y N 36 S49 C34 C35 SING Y N 37 S49 C35 C37 SING N N 38 S49 C35 C36 DOUB Y N 39 S49 C37 N38 SING N N 40 S49 C37 N39 DOUB N N 41 S49 C36 C32 SING Y N 42 S49 C7 H71C SING N N 43 S49 C7 H72C SING N N 44 S49 N9 H9 SING N N 45 S49 C5 H5 SING N N 46 S49 C3 H3 SING N N 47 S49 C6 H6 SING N N 48 S49 C1 H1 SING N N 49 S49 C2 H2 SING N N 50 S49 C16 H16 SING N N 51 S49 C20 H20 SING N N 52 S49 C14 H141 SING N N 53 S49 C14 H142 SING N N 54 S49 C17 H17 SING N N 55 S49 C18 H18 SING N N 56 S49 C19 H19 SING N N 57 S49 C10 H10 SING N N 58 S49 C22 H22 SING N N 59 S49 C25 H251 SING N N 60 S49 C25 H252 SING N N 61 S49 C23 H231 SING N N 62 S49 C23 H232 SING N N 63 S49 N27 H27 SING N N 64 S49 C24 H241 SING N N 65 S49 C24 H242 SING N N 66 S49 C28 H281 SING N N 67 S49 C28 H282 SING N N 68 S49 C33 H33 SING N N 69 S49 C32 H32 SING N N 70 S49 C34 H34 SING N N 71 S49 C36 H36 SING N N 72 S49 N38 H381 SING N N 73 S49 N38 H382 SING N N 74 S49 N39 H39 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S49 SMILES ACDLabs 12.01 "C(S(=O)(=O)NC(Cc1ccccc1)C(N3C(C(=O)NCc2ccc(/C(N)=N)cc2)CCC3)=O)c4ccccc4" S49 InChI InChI 1.03 "InChI=1S/C29H33N5O4S/c30-27(31)24-15-13-22(14-16-24)19-32-28(35)26-12-7-17-34(26)29(36)25(18-21-8-3-1-4-9-21)33-39(37,38)20-23-10-5-2-6-11-23/h1-6,8-11,13-16,25-26,33H,7,12,17-20H2,(H3,30,31)(H,32,35)/t25-,26+/m1/s1" S49 InChIKey InChI 1.03 VAMQUIIDPUWWSK-FTJBHMTQSA-N S49 SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1ccc(CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc3ccccc3)N[S](=O)(=O)Cc4ccccc4)cc1" S49 SMILES CACTVS 3.385 "NC(=N)c1ccc(CNC(=O)[CH]2CCCN2C(=O)[CH](Cc3ccccc3)N[S](=O)(=O)Cc4ccccc4)cc1" S49 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc3ccccc3)NS(=O)(=O)Cc4ccccc4)\N" S49 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NCc3ccc(cc3)C(=N)N)NS(=O)(=O)Cc4ccccc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S49 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(benzylsulfonyl)-D-phenylalanyl-N-(4-carbamimidoylbenzyl)-L-prolinamide" S49 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[(2R)-3-phenyl-2-[(phenylmethyl)sulfonylamino]propanoyl]pyrrolidine-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S49 "Create component" 2015-03-23 EBI S49 "Other modification" 2015-03-26 EBI S49 "Other modification" 2015-07-10 RCSB S49 "Initial release" 2015-07-15 RCSB S49 "Other modification" 2019-12-12 RCSB S49 "Other modification" 2020-09-03 RCSB ##