data_S4D # _chem_comp.id S4D _chem_comp.name "(1R,3S)-N-[(2H-1,3-benzodioxol-5-yl)methyl]-3-methylcyclopentan-1-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H19 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-04 _chem_comp.pdbx_modified_date 2020-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 233.306 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S4D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RB7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S4D C10 C1 C 0 1 Y N N -10.761 92.518 105.927 2.737 1.609 0.615 C10 S4D 1 S4D C13 C2 C 0 1 Y N N -9.067 90.464 106.762 1.775 -0.631 -0.702 C13 S4D 2 S4D C15 C3 C 0 1 N N N -8.642 93.498 108.810 5.267 -0.876 0.082 C15 S4D 3 S4D C17 C4 C 0 1 N N N -12.546 86.081 105.142 -3.576 -1.117 0.181 C17 S4D 4 S4D C01 C5 C 0 1 N N N -14.439 84.863 104.306 -5.931 -1.145 1.105 C01 S4D 5 S4D C02 C6 C 0 1 N N S -12.953 85.196 104.191 -5.026 -0.603 -0.003 C02 S4D 6 S4D C03 C7 C 0 1 N N N -12.599 85.941 102.772 -4.901 0.931 0.104 C03 S4D 7 S4D C04 C8 C 0 1 N N N -11.331 86.880 103.087 -3.447 1.279 -0.259 C04 S4D 8 S4D C05 C9 C 0 1 N N R -11.237 86.945 104.470 -2.739 -0.055 -0.575 C05 S4D 9 S4D C07 C10 C 0 1 N N N -9.966 88.834 105.043 -0.435 0.476 -1.094 C07 S4D 10 S4D C08 C11 C 0 1 Y N N -9.969 90.243 105.725 0.969 0.481 -0.544 C08 S4D 11 S4D C09 C12 C 0 1 Y N N -10.819 91.265 105.289 1.450 1.600 0.108 C09 S4D 12 S4D C11 C13 C 0 1 Y N N -9.840 92.739 106.996 3.548 0.496 0.465 C11 S4D 13 S4D C12 C14 C 0 1 Y N N -9.011 91.734 107.412 3.065 -0.630 -0.198 C12 S4D 14 S4D N06 N1 N 0 1 N N N -11.320 88.286 104.967 -1.359 -0.036 -0.073 N06 S4D 15 S4D O14 O1 O 0 1 N N N -8.210 92.197 108.493 4.046 -1.578 -0.219 O14 S4D 16 S4D O16 O2 O 0 1 N N N -9.572 93.878 107.815 4.831 0.251 0.863 O16 S4D 17 S4D H101 H1 H 0 0 N N N -11.415 93.315 105.607 3.110 2.484 1.125 H101 S4D 18 S4D H131 H2 H 0 0 N N N -8.406 89.670 107.077 1.398 -1.503 -1.217 H131 S4D 19 S4D H151 H3 H 0 0 N N N -9.123 93.506 109.799 5.940 -1.508 0.661 H151 S4D 20 S4D H152 H4 H 0 0 N N N -7.787 94.190 108.812 5.751 -0.540 -0.835 H152 S4D 21 S4D H172 H5 H 0 0 N N N -12.223 85.545 106.047 -3.306 -1.142 1.237 H172 S4D 22 S4D H171 H6 H 0 0 N N N -13.365 86.769 105.396 -3.452 -2.100 -0.272 H171 S4D 23 S4D H011 H7 H 0 0 N N N -14.631 84.367 105.269 -5.558 -0.813 2.074 H011 S4D 24 S4D H013 H8 H 0 0 N N N -15.028 85.790 104.248 -6.945 -0.774 0.960 H013 S4D 25 S4D H012 H9 H 0 0 N N N -14.729 84.192 103.484 -5.934 -2.235 1.071 H012 S4D 26 S4D H021 H10 H 0 0 N N N -12.371 84.263 104.233 -5.411 -0.889 -0.982 H021 S4D 27 S4D H032 H11 H 0 0 N N N -12.346 85.199 102.000 -5.586 1.411 -0.595 H032 S4D 28 S4D H031 H12 H 0 0 N N N -13.452 86.547 102.432 -5.119 1.253 1.122 H031 S4D 29 S4D H042 H13 H 0 0 N N N -10.416 86.442 102.662 -3.426 1.929 -1.134 H042 S4D 30 S4D H041 H14 H 0 0 N N N -11.486 87.885 102.667 -2.959 1.771 0.582 H041 S4D 31 S4D H051 H15 H 0 0 N N N -10.316 86.461 104.827 -2.754 -0.250 -1.647 H051 S4D 32 S4D H071 H16 H 0 0 N N N -9.334 88.151 105.630 -0.721 1.492 -1.366 H071 S4D 33 S4D H072 H17 H 0 0 N N N -9.558 88.928 104.026 -0.477 -0.162 -1.976 H072 S4D 34 S4D H091 H18 H 0 0 N N N -11.509 91.095 104.476 0.820 2.470 0.223 H091 S4D 35 S4D H061 H19 H 0 0 N N N -11.735 88.284 105.877 -1.077 -0.952 0.243 H061 S4D 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S4D C02 C01 SING N N 1 S4D C03 C02 SING N N 2 S4D C04 C03 SING N N 3 S4D C05 C04 SING N N 4 S4D C07 N06 SING N N 5 S4D C08 C07 SING N N 6 S4D C09 C08 DOUB Y N 7 S4D C10 C09 SING Y N 8 S4D C11 C10 DOUB Y N 9 S4D C12 C11 SING Y N 10 S4D C13 C12 DOUB Y N 11 S4D O14 C12 SING N N 12 S4D C15 O14 SING N N 13 S4D O16 C15 SING N N 14 S4D N06 C05 SING N N 15 S4D C17 C05 SING N N 16 S4D C02 C17 SING N N 17 S4D C08 C13 SING Y N 18 S4D C11 O16 SING N N 19 S4D C10 H101 SING N N 20 S4D C13 H131 SING N N 21 S4D C15 H151 SING N N 22 S4D C15 H152 SING N N 23 S4D C17 H172 SING N N 24 S4D C17 H171 SING N N 25 S4D C01 H011 SING N N 26 S4D C01 H013 SING N N 27 S4D C01 H012 SING N N 28 S4D C02 H021 SING N N 29 S4D C03 H032 SING N N 30 S4D C03 H031 SING N N 31 S4D C04 H042 SING N N 32 S4D C04 H041 SING N N 33 S4D C05 H051 SING N N 34 S4D C07 H071 SING N N 35 S4D C07 H072 SING N N 36 S4D C09 H091 SING N N 37 S4D N06 H061 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S4D SMILES ACDLabs 12.01 "c1cc(cc2c1OCO2)CNC3CC(C)CC3" S4D InChI InChI 1.03 "InChI=1S/C14H19NO2/c1-10-2-4-12(6-10)15-8-11-3-5-13-14(7-11)17-9-16-13/h3,5,7,10,12,15H,2,4,6,8-9H2,1H3" S4D InChIKey InChI 1.03 XIPYONXASDNYLO-UHFFFAOYSA-N S4D SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CC[C@H](C1)NCc2ccc3OCOc3c2" S4D SMILES CACTVS 3.385 "C[CH]1CC[CH](C1)NCc2ccc3OCOc3c2" S4D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CC[C@H](C1)NCc2ccc3c(c2)OCO3" S4D SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC(C1)NCc2ccc3c(c2)OCO3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S4D "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3S)-N-[(2H-1,3-benzodioxol-5-yl)methyl]-3-methylcyclopentan-1-amine" S4D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},3~{S})-~{N}-(1,3-benzodioxol-5-ylmethyl)-3-methyl-cyclopentan-1-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S4D "Create component" 2020-03-04 RCSB S4D "Modify model coordinates code" 2020-03-06 RCSB S4D "Other modification" 2020-03-25 RCSB S4D "Initial release" 2020-04-22 RCSB ##