data_S4L
#
_chem_comp.id S4L
_chem_comp.name "(1S,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H35 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 525.615
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S4L
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TJ0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S4L C4 C1 C 0 1 N N S N N N 8.512 2.150 19.765 3.091 0.896 -0.932 C4 S4L 1
S4L C5 C2 C 0 1 N N N N N N 8.023 1.345 18.565 4.297 0.961 0.007 C5 S4L 2
S4L C6 C3 C 0 1 N N S N N N 8.386 -0.148 18.699 3.978 1.886 1.183 C6 S4L 3
S4L C7 C4 C 0 1 N N N N N N 9.895 -0.429 18.631 3.785 3.340 0.692 C7 S4L 4
S4L C8 C5 C 0 1 N N N N N N 10.122 -1.506 17.558 4.411 4.149 1.849 C8 S4L 5
S4L C10 C6 C 0 1 N N N N N N 7.853 -0.976 17.532 5.156 1.964 2.130 C10 S4L 6
S4L C12 C7 C 0 1 N N S N N N 8.202 3.659 19.566 3.455 0.082 -2.175 C12 S4L 7
S4L C16 C8 C 0 1 N N N N N N 7.558 1.505 25.738 -1.457 -2.303 0.763 C16 S4L 8
S4L C18 C9 C 0 1 N N N N N N 7.060 2.473 28.040 -2.541 -4.484 1.321 C18 S4L 9
S4L C19 C10 C 0 1 N N N N N N 5.574 2.152 27.852 -2.295 -4.226 2.809 C19 S4L 10
S4L C20 C11 C 0 1 N N N N N N 5.354 0.975 26.916 -2.310 -2.720 3.074 C20 S4L 11
S4L N22 N1 N 0 1 N N N N N N 8.425 -0.631 23.721 -1.714 0.366 -0.464 N22 S4L 12
S4L C23 C12 C 0 1 N N N N N N 8.279 -1.728 23.048 -2.841 0.343 0.275 C23 S4L 13
S4L C25 C13 C 0 1 N N N N N N 9.051 -4.002 22.654 -5.174 0.728 0.602 C25 S4L 14
S4L C26 C14 C 0 1 Y N N N N N 10.182 -3.925 21.576 -6.367 1.255 -0.152 C26 S4L 15
S4L C27 C15 C 0 1 Y N N N N N 10.334 -4.821 20.517 -6.674 2.603 -0.105 C27 S4L 16
S4L C28 C16 C 0 1 Y N N N N N 11.360 -4.713 19.582 -7.766 3.088 -0.800 C28 S4L 17
S4L C31 C17 C 0 1 Y N N N N N 11.122 -2.897 21.643 -7.153 0.393 -0.894 C31 S4L 18
S4L C14 C18 C 0 1 N N S N N N 7.950 0.695 23.341 -0.453 -0.111 0.108 C14 S4L 19
S4L C15 C19 C 0 1 N N N N N N 8.254 1.756 24.379 -0.358 -1.629 -0.060 C15 S4L 20
S4L C17 C20 C 0 1 N N N N N N 7.757 2.683 26.699 -1.442 -3.810 0.497 C17 S4L 21
S4L C2 C21 C 0 1 N N N N N N 8.621 1.165 21.974 0.702 0.546 -0.602 C2 S4L 22
S4L C21 C22 C 0 1 N N N N N N 6.037 1.230 25.573 -1.211 -2.046 2.251 C21 S4L 23
S4L C29 C23 C 0 1 Y N N N N N 12.282 -3.668 19.686 -8.551 2.225 -1.543 C29 S4L 24
S4L C30 C24 C 0 1 Y N N N N N 12.154 -2.753 20.736 -8.247 0.877 -1.585 C30 S4L 25
S4L N3 N2 N 0 1 N N N N N N 7.919 1.699 21.000 1.968 0.257 -0.241 N3 S4L 26
S4L N9 N3 N 0 1 N N N N N N 8.813 -1.696 16.948 5.380 3.245 2.480 N9 S4L 27
S4L O1 O1 O 0 1 N N N N N N 9.816 1.036 21.854 0.492 1.336 -1.498 O1 S4L 28
S4L O11 O2 O 0 1 N N N N N N 6.703 -0.969 17.214 5.802 1.013 2.514 O11 S4L 29
S4L O13 O3 O 0 1 N N N N N N 8.706 4.301 18.671 4.622 0.638 -2.784 O13 S4L 30
S4L O24 O4 O 0 1 N N N N N N 8.843 -2.831 23.512 -4.000 0.782 -0.251 O24 S4L 31
S4L O32 O5 O 0 1 N N N N N N 7.640 -1.737 21.997 -2.811 -0.073 1.416 O32 S4L 32
S4L H1 H1 H 0 1 N N N N N N 9.605 2.038 19.828 2.807 1.906 -1.230 H1 S4L 33
S4L H2 H2 H 0 1 N N N N N N 8.489 1.745 17.652 4.520 -0.038 0.381 H2 S4L 34
S4L H3 H3 H 0 1 N N N N N N 6.930 1.442 18.491 5.159 1.348 -0.536 H3 S4L 35
S4L H4 H4 H 0 1 N N N N N N 7.982 -0.539 19.644 3.088 1.540 1.709 H4 S4L 36
S4L H5 H5 H 0 1 N N N N N N 10.253 -0.790 19.606 4.324 3.511 -0.240 H5 S4L 37
S4L H6 H6 H 0 1 N N N N N N 10.435 0.490 18.360 2.727 3.576 0.578 H6 S4L 38
S4L H7 H7 H 0 1 N N N N N N 10.477 -2.441 18.015 4.917 5.033 1.461 H7 S4L 39
S4L H8 H8 H 0 1 N N N N N N 7.216 3.948 19.959 2.627 0.109 -2.883 H8 S4L 40
S4L H9 H9 H 0 1 N N N N N N 8.014 0.613 26.192 -2.427 -1.894 0.479 H9 S4L 41
S4L H10 H10 H 0 1 N N N N N N 7.543 1.637 28.568 -2.530 -5.558 1.131 H10 S4L 42
S4L H11 H11 H 0 1 N N N N N N 7.155 3.390 28.640 -3.511 -4.075 1.037 H11 S4L 43
S4L H12 H12 H 0 1 N N N N N N 5.071 3.036 27.433 -3.078 -4.707 3.395 H12 S4L 44
S4L H13 H13 H 0 1 N N N N N N 5.137 1.911 28.832 -1.326 -4.636 3.093 H13 S4L 45
S4L H14 H14 H 0 1 N N N N N N 4.275 0.837 26.754 -3.280 -2.311 2.790 H14 S4L 46
S4L H15 H15 H 0 1 N N N N N N 5.775 0.066 27.371 -2.135 -2.536 4.134 H15 S4L 47
S4L H16 H16 H 0 1 N N N N N N 8.914 -0.700 24.591 -1.738 0.698 -1.375 H16 S4L 48
S4L H17 H17 H 0 1 N N N N N N 8.106 -4.193 22.125 -5.006 1.338 1.490 H17 S4L 49
S4L H18 H18 H 0 1 N N N N N N 9.282 -4.853 23.311 -5.359 -0.304 0.900 H18 S4L 50
S4L H19 H19 H 0 1 N N N N N N 9.627 -5.631 20.419 -6.060 3.276 0.475 H19 S4L 51
S4L H20 H20 H 0 1 N N N N N N 11.443 -5.433 18.781 -8.005 4.140 -0.764 H20 S4L 52
S4L H21 H21 H 0 1 N N N N N N 11.039 -2.177 22.444 -6.911 -0.659 -0.934 H21 S4L 53
S4L H22 H22 H 0 1 N N N N N N 6.862 0.660 23.183 -0.418 0.139 1.169 H22 S4L 54
S4L H23 H23 H 0 1 N N N N N N 9.341 1.781 24.544 0.617 -1.973 0.285 H23 S4L 55
S4L H24 H24 H 0 1 N N N N N N 7.920 2.729 23.991 -0.483 -1.886 -1.112 H24 S4L 56
S4L H25 H25 H 0 1 N N N N N N 8.834 2.812 26.879 -1.618 -3.994 -0.563 H25 S4L 57
S4L H26 H26 H 0 1 N N N N N N 7.352 3.592 26.230 -0.473 -4.219 0.781 H26 S4L 58
S4L H27 H27 H 0 1 N N N N N N 5.568 2.103 25.096 -0.242 -2.455 2.535 H27 S4L 59
S4L H28 H28 H 0 1 N N N N N N 5.903 0.346 24.933 -1.222 -0.972 2.440 H28 S4L 60
S4L H29 H29 H 0 1 N N N N N N 13.081 -3.568 18.966 -9.404 2.604 -2.086 H29 S4L 61
S4L H30 H30 H 0 1 N N N N N N 12.857 -1.939 20.837 -8.861 0.204 -2.165 H30 S4L 62
S4L H31 H31 H 0 1 N N N N N N 6.931 1.797 21.120 2.135 -0.375 0.476 H31 S4L 63
S4L S1 S1 S 0 1 N Y N N N N ? ? ? 3.784 -1.637 -1.696 S1 S4L 64
S4L O3 O6 O 0 1 N Y N N N N ? ? ? 4.254 -2.306 -2.980 O3 S4L 65
S4L O4 O7 O 0 1 N Y N N N N ? ? ? 4.910 -1.707 -0.832 O4 S4L 66
S4L O2 O8 O 0 1 N Y N N N N ? ? ? 2.572 -2.306 -1.376 O2 S4L 67
S4L H32 H32 H 0 1 N N N N N N 10.853 -1.162 16.811 3.643 4.439 2.565 H32 S4L 68
S4L H33 H33 H 0 1 N N N N N N 8.650 -2.304 16.171 6.090 3.533 3.075 H33 S4L 69
S4L H34 H34 H 0 1 N N N N N N 8.397 5.198 18.712 5.400 0.646 -2.209 H34 S4L 70
S4L H35 H35 H 0 1 N Y N N N N ? ? ? 4.470 -3.243 -2.880 H35 S4L 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S4L N9 C10 SING N N 1
S4L N9 C8 SING N N 2
S4L O11 C10 DOUB N N 3
S4L C10 C6 SING N N 4
S4L C8 C7 SING N N 5
S4L C5 C6 SING N N 6
S4L C5 C4 SING N N 7
S4L C7 C6 SING N N 8
S4L O13 C12 SING N N 9
S4L C12 C4 SING N N 10
S4L C28 C29 DOUB Y N 11
S4L C28 C27 SING Y N 12
S4L C29 C30 SING Y N 13
S4L C4 N3 SING N N 14
S4L C27 C26 DOUB Y N 15
S4L C30 C31 DOUB Y N 16
S4L N3 C2 SING N N 17
S4L C26 C31 SING Y N 18
S4L C26 C25 SING N N 19
S4L O1 C2 DOUB N N 20
S4L C2 C14 SING N N 21
S4L O32 C23 DOUB N N 22
S4L C25 O24 SING N N 23
S4L C23 O24 SING N N 24
S4L C23 N22 SING N N 25
S4L C14 N22 SING N N 26
S4L C14 C15 SING N N 27
S4L C15 C16 SING N N 28
S4L C21 C16 SING N N 29
S4L C21 C20 SING N N 30
S4L C16 C17 SING N N 31
S4L C17 C18 SING N N 32
S4L C20 C19 SING N N 33
S4L C19 C18 SING N N 34
S4L C4 H1 SING N N 35
S4L C5 H2 SING N N 36
S4L C5 H3 SING N N 37
S4L C6 H4 SING N N 38
S4L C7 H5 SING N N 39
S4L C7 H6 SING N N 40
S4L C8 H7 SING N N 41
S4L C12 H8 SING N N 42
S4L C16 H9 SING N N 43
S4L C18 H10 SING N N 44
S4L C18 H11 SING N N 45
S4L C19 H12 SING N N 46
S4L C19 H13 SING N N 47
S4L C20 H14 SING N N 48
S4L C20 H15 SING N N 49
S4L N22 H16 SING N N 50
S4L C25 H17 SING N N 51
S4L C25 H18 SING N N 52
S4L C27 H19 SING N N 53
S4L C28 H20 SING N N 54
S4L C31 H21 SING N N 55
S4L C14 H22 SING N N 56
S4L C15 H23 SING N N 57
S4L C15 H24 SING N N 58
S4L C17 H25 SING N N 59
S4L C17 H26 SING N N 60
S4L C21 H27 SING N N 61
S4L C21 H28 SING N N 62
S4L C29 H29 SING N N 63
S4L C30 H30 SING N N 64
S4L N3 H31 SING N N 65
S4L C12 S1 SING N N 66
S4L S1 O3 SING N N 67
S4L S1 O4 DOUB N N 68
S4L S1 O2 DOUB N N 69
S4L C8 H32 SING N N 70
S4L N9 H33 SING N N 71
S4L O13 H34 SING N N 72
S4L O3 H35 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S4L SMILES ACDLabs 12.01 "O=C(OCc1ccccc1)NC(CC1CCCCC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"
S4L InChI InChI 1.03 "InChI=1S/C24H35N3O8S/c28-21-18(11-12-25-21)14-20(23(30)36(32,33)34)26-22(29)19(13-16-7-3-1-4-8-16)27-24(31)35-15-17-9-5-2-6-10-17/h2,5-6,9-10,16,18-20,23,30H,1,3-4,7-8,11-15H2,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t18-,19-,20-,23-/m0/s1"
S4L InChIKey InChI 1.03 JRFNCWJMGHZHFL-MXBUBSDBSA-N
S4L SMILES_CANONICAL CACTVS 3.385 "O[C@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)OCc3ccccc3)[S](O)(=O)=O"
S4L SMILES CACTVS 3.385 "O[CH]([CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)OCc3ccccc3)[S](O)(=O)=O"
S4L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)S(=O)(=O)O"
S4L SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NC(CC2CCCCC2)C(=O)NC(CC3CCNC3=O)C(O)S(=O)(=O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S4L "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
S4L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-3-cyclohexyl-2-(phenylmethoxycarbonylamino)propanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S4L "Create component" 2022-01-19 RCSB
S4L "Initial release" 2022-05-04 RCSB
S4L "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id S4L
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C12
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#