data_S4M # _chem_comp.id S4M _chem_comp.name "5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H24 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-11-29 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.444 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S4M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2O0L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S4M CA CA C 0 1 N N N 20.419 7.069 48.810 8.347 2.436 -1.649 CA S4M 1 S4M N N N 0 1 N N N 20.664 6.864 47.389 8.676 1.732 -2.859 N S4M 2 S4M CB CB C 0 1 N N N 19.087 6.438 49.163 6.846 2.654 -1.490 CB S4M 3 S4M CG CG C 0 1 N N N 19.210 4.933 49.365 6.498 3.379 -0.197 CG S4M 4 S4M SD SD S 0 1 N N N 18.526 3.934 48.005 4.751 3.592 -0.032 SD S4M 5 S4M CE CE C 0 1 N N N 16.814 4.509 47.999 4.502 4.482 1.475 CE S4M 6 S4M "C5'" C5* C 0 1 N N N 18.439 2.379 48.996 4.092 1.980 0.223 "C5'" S4M 7 S4M "C4'" C4* C 0 1 N N S 17.844 1.157 48.283 2.595 2.031 0.465 "C4'" S4M 8 S4M "O4'" O4* O 0 1 N N N 18.273 -0.135 48.751 1.933 2.574 -0.689 "O4'" S4M 9 S4M "C1'" C1* C 0 1 N N R 17.268 -1.094 48.440 0.622 1.976 -0.784 "C1'" S4M 10 S4M "C2'" C2* C 0 1 N N R 15.988 -0.344 48.781 0.518 0.913 0.310 "C2'" S4M 11 S4M "O2'" O2* O 0 1 N N N 14.899 -0.969 48.119 -0.210 1.445 1.415 "O2'" S4M 12 S4M "C3'" C3* C 0 1 N N S 16.317 1.090 48.326 1.969 0.663 0.677 "C3'" S4M 13 S4M "O3'" O3* O 0 1 N N N 15.958 1.285 46.978 2.143 0.197 1.998 "O3'" S4M 14 S4M N9 N9 N 0 1 Y N N 17.521 -2.377 49.162 0.424 1.450 -2.136 N9 S4M 15 S4M C8 C8 C 0 1 Y N N 17.322 -2.632 50.490 1.390 0.903 -2.940 C8 S4M 16 S4M N7 N7 N 0 1 Y N N 17.695 -3.905 50.760 0.910 0.517 -4.103 N7 S4M 17 S4M C5 C5 C 0 1 Y N N 18.195 -4.453 49.632 -0.426 0.827 -4.052 C5 S4M 18 S4M C6 C6 C 0 1 Y N N 18.712 -5.707 49.338 -1.462 0.665 -4.967 C6 S4M 19 S4M N6 N6 N 0 1 N N N 18.837 -6.646 50.272 -1.225 0.085 -6.225 N6 S4M 20 S4M C4 C4 C 0 1 Y N N 18.084 -3.500 48.611 -0.749 1.408 -2.837 C4 S4M 21 S4M N3 N3 N 0 1 Y N N 18.487 -3.797 47.338 -1.956 1.836 -2.437 N3 S4M 22 S4M C2 C2 C 0 1 Y N N 19.018 -5.024 47.040 -2.875 1.627 -3.404 C2 S4M 23 S4M N1 N1 N 0 1 Y N N 19.105 -5.977 48.036 -2.709 1.075 -4.630 N1 S4M 24 S4M HA1 1HA H 0 1 N N N 21.221 6.600 49.398 8.884 3.389 -1.660 HA1 S4M 25 S4M HA2 2HA H 0 1 N N N 20.398 8.145 49.038 8.729 1.836 -0.817 HA2 S4M 26 S4M HN1 1HN H 0 1 N N N 19.791 6.817 46.903 9.375 2.115 -3.476 HN1 S4M 27 S4M HN2 2HN H 0 1 N N N 21.204 7.626 47.031 8.073 0.989 -3.175 HN2 S4M 28 S4M HB1 1HB H 0 1 N N N 18.719 6.890 50.096 6.344 1.679 -1.504 HB1 S4M 29 S4M HB2 2HB H 0 1 N N N 18.391 6.617 48.330 6.457 3.220 -2.346 HB2 S4M 30 S4M HG1 1HG H 0 1 N N N 18.665 4.670 50.284 6.833 2.814 0.678 HG1 S4M 31 S4M HG2 2HG H 0 1 N N N 20.285 4.707 49.415 6.940 4.379 -0.162 HG2 S4M 32 S4M HSD HSD H 0 1 N N N 19.092 3.911 46.835 4.206 4.220 -1.092 HSD S4M 33 S4M HE1 1HE H 0 1 N N N 16.462 4.626 49.035 5.427 5.006 1.722 HE1 S4M 34 S4M HE2 2HE H 0 1 N N N 16.754 5.477 47.480 3.689 5.193 1.325 HE2 S4M 35 S4M HE3 3HE H 0 1 N N N 16.182 3.774 47.478 4.246 3.768 2.259 HE3 S4M 36 S4M "H5'1" 1H5* H 0 0 N N N 19.467 2.119 49.289 4.315 1.390 -0.666 "H5'1" S4M 37 S4M "H5'2" 2H5* H 0 0 N N N 17.761 2.596 49.835 4.603 1.548 1.083 "H5'2" S4M 38 S4M "H4'" H4* H 0 1 N N N 18.232 1.337 47.269 2.399 2.693 1.317 "H4'" S4M 39 S4M "H1'" H1* H 0 1 N N N 17.229 -1.440 47.397 -0.125 2.769 -0.673 "H1'" S4M 40 S4M "H2'" H2* H 0 1 N N N 15.680 -0.342 49.837 -0.000 0.001 -0.003 "H2'" S4M 41 S4M "HO2'" HO2* H 0 0 N N N 14.191 -1.109 48.736 0.161 2.324 1.609 "HO2'" S4M 42 S4M "H3'" H3* H 0 1 N N N 15.809 1.808 48.987 2.403 -0.065 -0.019 "H3'" S4M 43 S4M "HO3'" HO3* H 0 0 N N N 15.012 1.329 46.905 2.579 -0.665 1.928 "HO3'" S4M 44 S4M H8 H8 H 0 1 N N N 16.929 -1.929 51.210 2.421 0.814 -2.623 H8 S4M 45 S4M HN61 1HN6 H 0 0 N N N 18.868 -7.546 49.838 -0.293 -0.186 -6.475 HN61 S4M 46 S4M HN62 2HN6 H 0 0 N N N 19.681 -6.494 50.786 -1.971 0.035 -6.893 HN62 S4M 47 S4M H2 H2 H 0 1 N N N 19.364 -5.243 46.041 -3.885 1.945 -3.168 H2 S4M 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S4M CA N SING N N 1 S4M CA CB SING N N 2 S4M CA HA1 SING N N 3 S4M CA HA2 SING N N 4 S4M N HN1 SING N N 5 S4M N HN2 SING N N 6 S4M CB CG SING N N 7 S4M CB HB1 SING N N 8 S4M CB HB2 SING N N 9 S4M CG SD SING N N 10 S4M CG HG1 SING N N 11 S4M CG HG2 SING N N 12 S4M SD CE SING N N 13 S4M SD "C5'" SING N N 14 S4M SD HSD SING N N 15 S4M CE HE1 SING N N 16 S4M CE HE2 SING N N 17 S4M CE HE3 SING N N 18 S4M "C5'" "C4'" SING N N 19 S4M "C5'" "H5'1" SING N N 20 S4M "C5'" "H5'2" SING N N 21 S4M "C4'" "C3'" SING N N 22 S4M "C4'" "O4'" SING N N 23 S4M "C4'" "H4'" SING N N 24 S4M "O4'" "C1'" SING N N 25 S4M "C1'" "C2'" SING N N 26 S4M "C1'" N9 SING N N 27 S4M "C1'" "H1'" SING N N 28 S4M "C2'" "O2'" SING N N 29 S4M "C2'" "C3'" SING N N 30 S4M "C2'" "H2'" SING N N 31 S4M "O2'" "HO2'" SING N N 32 S4M "C3'" "O3'" SING N N 33 S4M "C3'" "H3'" SING N N 34 S4M "O3'" "HO3'" SING N N 35 S4M N9 C4 SING Y N 36 S4M N9 C8 SING Y N 37 S4M C8 N7 DOUB Y N 38 S4M C8 H8 SING N N 39 S4M N7 C5 SING Y N 40 S4M C5 C4 DOUB Y N 41 S4M C5 C6 SING Y N 42 S4M C6 N1 DOUB Y N 43 S4M C6 N6 SING N N 44 S4M N6 HN61 SING N N 45 S4M N6 HN62 SING N N 46 S4M C4 N3 SING Y N 47 S4M N3 C2 DOUB Y N 48 S4M C2 N1 SING Y N 49 S4M C2 H2 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S4M SMILES ACDLabs 10.04 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CS(CCCN)C)N" S4M SMILES_CANONICAL CACTVS 3.341 "C[SH](CCCN)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" S4M SMILES CACTVS 3.341 "C[SH](CCCN)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" S4M SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[S@@H](CCCN)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" S4M SMILES "OpenEye OEToolkits" 1.5.0 "CS(CCCN)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" S4M InChI InChI 1.03 "InChI=1S/C14H24N6O3S/c1-24(4-2-3-15)5-8-10(21)11(22)14(23-8)20-7-19-9-12(16)17-6-18-13(9)20/h6-8,10-11,14,21-22,24H,2-5,15H2,1H3,(H2,16,17,18)/t8-,10-,11-,14-/m1/s1" S4M InChIKey InChI 1.03 KIZZALRCMBIHBH-IDTAVKCVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S4M "SYSTEMATIC NAME" ACDLabs 10.04 "5'-[(S)-(3-aminopropyl)(methyl)-lambda~4~-sulfanyl]-5'-deoxyadenosine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S4M "Create component" 2006-11-29 PDBJ S4M "Modify descriptor" 2011-06-04 RCSB #