data_S4N # _chem_comp.id S4N _chem_comp.name "(R)-N2-(4-(cyclopropylmethoxy)-3,5-difluorophenyl)-5-(3-methylpiperazin-1-yl)-N4-(tetrahydro-2H-pyran-4-yl)pyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H32 F2 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{N}2-[4-(cyclopropylmethoxy)-3,5-bis(fluoranyl)phenyl]-5-[(3~{R})-3-methylpiperazin-1-yl]-~{N}4-(oxan-4-yl)pyrimidine-2,4-diamine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-06 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.547 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S4N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AVZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S4N C1 C1 C 0 1 N N R 19.914 27.209 -25.053 -4.688 -3.728 -0.783 C1 S4N 1 S4N C2 C2 C 0 1 N N N 20.660 27.808 -23.808 -3.437 -2.847 -0.770 C2 S4N 2 S4N C3 C3 C 0 1 N N N 19.058 26.616 -22.336 -3.629 -2.610 1.631 C3 S4N 3 S4N C7 C4 C 0 1 Y N N 21.628 29.204 -19.106 -0.323 0.649 0.353 C7 S4N 4 S4N C8 C5 C 0 1 Y N N 19.805 29.151 -20.512 -2.608 0.362 0.245 C8 S4N 5 S4N C9 C6 C 0 1 N N N 17.776 30.404 -19.880 -4.065 2.345 0.027 C9 S4N 6 S4N C10 C7 C 0 1 N N N 17.446 31.739 -20.526 -3.934 2.770 -1.439 C10 S4N 7 S4N C11 C8 C 0 1 N N N 16.587 32.560 -19.590 -4.202 4.273 -1.552 C11 S4N 8 S4N C12 C9 C 0 1 N N N 15.721 30.639 -18.529 -5.667 4.232 0.346 C12 S4N 9 S4N C13 C10 C 0 1 N N N 16.511 29.702 -19.411 -5.459 2.728 0.535 C13 S4N 10 S4N C14 C11 C 0 1 Y N N 21.581 30.466 -16.952 2.067 0.991 0.351 C14 S4N 11 S4N C15 C12 C 0 1 Y N N 20.748 31.531 -17.292 2.365 -0.131 -0.412 C15 S4N 12 S4N C16 C13 C 0 1 Y N N 20.174 32.272 -16.289 3.652 -0.639 -0.420 C16 S4N 13 S4N C19 C14 C 0 1 Y N N 21.810 30.167 -15.611 3.060 1.602 1.105 C19 S4N 14 S4N C20 C15 C 0 1 N N N 18.722 32.155 -13.246 6.803 -0.018 -0.667 C20 S4N 15 S4N C21 C16 C 0 1 N N N 17.497 31.979 -14.125 8.168 -0.693 -0.520 C21 S4N 16 S4N C22 C17 C 0 1 N N N 16.477 30.967 -13.732 9.233 -0.367 -1.569 C22 S4N 17 S4N F1 F1 F 0 1 N N N 19.370 33.305 -16.630 3.942 -1.730 -1.161 F1 S4N 18 S4N C17 C18 C 0 1 Y N N 20.372 32.018 -14.936 4.644 -0.028 0.334 C17 S4N 19 S4N O1 O1 O 0 1 N N N 19.734 32.834 -14.009 5.910 -0.528 0.326 O1 S4N 20 S4N C23 C19 C 0 1 N N N 16.164 32.417 -13.632 9.359 0.194 -0.151 C23 S4N 21 S4N C18 C20 C 0 1 Y N N 21.210 30.941 -14.648 4.346 1.093 1.097 C18 S4N 22 S4N F F2 F 0 1 N N N 21.441 30.644 -13.354 5.312 1.688 1.830 F S4N 23 S4N N5 N1 N 0 1 N N N 22.184 29.677 -17.954 0.766 1.509 0.354 N5 S4N 24 S4N N2 N2 N 0 1 Y N N 22.380 28.384 -19.851 -0.115 -0.653 0.460 N2 S4N 25 S4N C6 C21 C 0 1 Y N N 21.808 27.931 -20.974 -1.129 -1.508 0.462 C6 S4N 26 S4N N3 N3 N 0 1 Y N N 20.378 29.603 -19.385 -1.543 1.155 0.250 N3 S4N 27 S4N N4 N4 N 0 1 N N N 18.548 29.558 -20.784 -3.885 0.895 0.137 N4 S4N 28 S4N O O2 O 0 1 N N N 15.397 31.852 -19.221 -5.501 4.565 -1.034 O S4N 29 S4N C5 C22 C 0 1 Y N N 20.518 28.272 -21.377 -2.422 -1.024 0.351 C5 S4N 30 S4N N N5 N 0 1 N N N 19.899 27.799 -22.556 -3.520 -1.899 0.350 N S4N 31 S4N C4 C23 C 0 1 N N N 18.162 26.354 -23.530 -4.880 -3.491 1.619 C4 S4N 32 S4N N1 N6 N 0 1 N N N 18.979 26.070 -24.715 -4.797 -4.439 0.499 N1 S4N 33 S4N C C24 C 0 1 N N N 20.891 26.706 -26.104 -4.586 -4.743 -1.923 C S4N 34 S4N H1 H1 H 0 1 N N N 19.319 28.018 -25.501 -5.571 -3.105 -0.928 H1 S4N 35 S4N H2 H2 H 0 1 N N N 21.580 27.225 -23.651 -2.553 -3.473 -0.651 H2 S4N 36 S4N H3 H3 H 0 1 N N N 20.922 28.851 -24.039 -3.371 -2.296 -1.708 H3 S4N 37 S4N H4 H4 H 0 1 N N N 18.432 26.780 -21.446 -2.746 -3.233 1.777 H4 S4N 38 S4N H5 H5 H 0 1 N N N 19.704 25.741 -22.173 -3.701 -1.886 2.444 H5 S4N 39 S4N H6 H6 H 0 1 N N N 18.390 30.609 -18.991 -3.308 2.853 0.623 H6 S4N 40 S4N H7 H7 H 0 1 N N N 18.378 32.283 -20.738 -2.927 2.552 -1.792 H7 S4N 41 S4N H8 H8 H 0 1 N N N 16.901 31.566 -21.465 -4.660 2.224 -2.042 H8 S4N 42 S4N H9 H9 H 0 1 N N N 17.164 32.789 -18.682 -3.451 4.820 -0.981 H9 S4N 43 S4N H10 H10 H 0 1 N N N 16.305 33.498 -20.092 -4.152 4.573 -2.599 H10 S4N 44 S4N H11 H11 H 0 1 N N N 14.789 30.142 -18.221 -6.673 4.503 0.666 H11 S4N 45 S4N H12 H12 H 0 1 N N N 16.319 30.883 -17.638 -4.936 4.779 0.942 H12 S4N 46 S4N H13 H13 H 0 1 N N N 15.903 29.417 -20.283 -6.215 2.181 -0.028 H13 S4N 47 S4N H14 H14 H 0 1 N N N 16.780 28.800 -18.842 -5.542 2.479 1.594 H14 S4N 48 S4N H15 H15 H 0 1 N N N 20.557 31.769 -18.328 1.593 -0.606 -0.998 H15 S4N 49 S4N H16 H16 H 0 1 N N N 22.448 29.341 -15.333 2.828 2.474 1.698 H16 S4N 50 S4N H17 H17 H 0 1 N N N 18.461 32.753 -12.360 6.914 1.059 -0.536 H17 S4N 51 S4N H18 H18 H 0 1 N N N 19.095 31.171 -12.927 6.400 -0.224 -1.658 H18 S4N 52 S4N H19 H19 H 0 1 N N N 17.671 32.091 -15.205 8.151 -1.706 -0.118 H19 S4N 53 S4N H20 H20 H 0 1 N N N 15.989 30.351 -14.501 9.917 -1.165 -1.857 H20 S4N 54 S4N H21 H21 H 0 1 N N N 16.618 30.370 -12.819 8.962 0.329 -2.363 H21 S4N 55 S4N H22 H22 H 0 1 N N N 16.072 32.893 -12.644 9.170 1.258 -0.012 H22 S4N 56 S4N H23 H23 H 0 1 N N N 15.444 32.873 -14.327 10.125 -0.236 0.494 H23 S4N 57 S4N H24 H24 H 0 1 N N N 23.142 29.433 -17.800 0.627 2.469 0.358 H24 S4N 58 S4N H25 H25 H 0 1 N N N 22.379 27.264 -21.603 -0.949 -2.570 0.549 H25 S4N 59 S4N H26 H26 H 0 1 N N N 18.600 30.055 -21.650 -4.657 0.309 0.134 H26 S4N 60 S4N H27 H27 H 0 1 N N N 17.539 27.241 -23.720 -4.946 -4.041 2.557 H27 S4N 61 S4N H28 H28 H 0 1 N N N 17.515 25.490 -23.318 -5.764 -2.865 1.501 H28 S4N 62 S4N H29 H29 H 0 1 N N N 18.372 25.910 -25.493 -5.586 -5.068 0.498 H29 S4N 63 S4N H31 H31 H 0 1 N N N 21.588 27.513 -26.373 -5.477 -5.372 -1.930 H31 S4N 64 S4N H32 H32 H 0 1 N N N 21.456 25.853 -25.701 -4.506 -4.216 -2.873 H32 S4N 65 S4N H33 H33 H 0 1 N N N 20.335 26.388 -26.998 -3.703 -5.366 -1.777 H33 S4N 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S4N C C1 SING N N 1 S4N C1 N1 SING N N 2 S4N C1 C2 SING N N 3 S4N N1 C4 SING N N 4 S4N C2 N SING N N 5 S4N C4 C3 SING N N 6 S4N N C3 SING N N 7 S4N N C5 SING N N 8 S4N C5 C6 DOUB Y N 9 S4N C5 C8 SING Y N 10 S4N C6 N2 SING Y N 11 S4N N4 C8 SING N N 12 S4N N4 C9 SING N N 13 S4N C10 C9 SING N N 14 S4N C10 C11 SING N N 15 S4N C8 N3 DOUB Y N 16 S4N C9 C13 SING N N 17 S4N N2 C7 DOUB Y N 18 S4N C11 O SING N N 19 S4N C13 C12 SING N N 20 S4N N3 C7 SING Y N 21 S4N O C12 SING N N 22 S4N C7 N5 SING N N 23 S4N N5 C14 SING N N 24 S4N C15 C14 DOUB Y N 25 S4N C15 C16 SING Y N 26 S4N C14 C19 SING Y N 27 S4N F1 C16 SING N N 28 S4N C16 C17 DOUB Y N 29 S4N C19 C18 DOUB Y N 30 S4N C17 C18 SING Y N 31 S4N C17 O1 SING N N 32 S4N C18 F SING N N 33 S4N C21 C22 SING N N 34 S4N C21 C23 SING N N 35 S4N C21 C20 SING N N 36 S4N O1 C20 SING N N 37 S4N C22 C23 SING N N 38 S4N C1 H1 SING N N 39 S4N C2 H2 SING N N 40 S4N C2 H3 SING N N 41 S4N C3 H4 SING N N 42 S4N C3 H5 SING N N 43 S4N C9 H6 SING N N 44 S4N C10 H7 SING N N 45 S4N C10 H8 SING N N 46 S4N C11 H9 SING N N 47 S4N C11 H10 SING N N 48 S4N C12 H11 SING N N 49 S4N C12 H12 SING N N 50 S4N C13 H13 SING N N 51 S4N C13 H14 SING N N 52 S4N C15 H15 SING N N 53 S4N C19 H16 SING N N 54 S4N C20 H17 SING N N 55 S4N C20 H18 SING N N 56 S4N C21 H19 SING N N 57 S4N C22 H20 SING N N 58 S4N C22 H21 SING N N 59 S4N C23 H22 SING N N 60 S4N C23 H23 SING N N 61 S4N N5 H24 SING N N 62 S4N C6 H25 SING N N 63 S4N N4 H26 SING N N 64 S4N C4 H27 SING N N 65 S4N C4 H28 SING N N 66 S4N N1 H29 SING N N 67 S4N C H31 SING N N 68 S4N C H32 SING N N 69 S4N C H33 SING N N 70 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S4N InChI InChI 1.03 "InChI=1S/C24H32F2N6O2/c1-15-13-32(7-6-27-15)21-12-28-24(31-23(21)29-17-4-8-33-9-5-17)30-18-10-19(25)22(20(26)11-18)34-14-16-2-3-16/h10-12,15-17,27H,2-9,13-14H2,1H3,(H2,28,29,30,31)/t15-/m1/s1" S4N InChIKey InChI 1.03 FPYULJCYPOLXGV-OAHLLOKOSA-N S4N SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN(CCN1)c2cnc(Nc3cc(F)c(OCC4CC4)c(F)c3)nc2NC5CCOCC5" S4N SMILES CACTVS 3.385 "C[CH]1CN(CCN1)c2cnc(Nc3cc(F)c(OCC4CC4)c(F)c3)nc2NC5CCOCC5" S4N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(CCN1)c2cnc(nc2NC3CCOCC3)Nc4cc(c(c(c4)F)OCC5CC5)F" S4N SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CCN1)c2cnc(nc2NC3CCOCC3)Nc4cc(c(c(c4)F)OCC5CC5)F" # _pdbx_chem_comp_identifier.comp_id S4N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}2-[4-(cyclopropylmethoxy)-3,5-bis(fluoranyl)phenyl]-5-[(3~{R})-3-methylpiperazin-1-yl]-~{N}4-(oxan-4-yl)pyrimidine-2,4-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S4N "Create component" 2020-11-06 PDBE S4N "Initial release" 2021-03-03 RCSB S4N "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S4N _pdbx_chem_comp_synonyms.name "~{N}2-[4-(cyclopropylmethoxy)-3,5-bis(fluoranyl)phenyl]-5-[(3~{R})-3-methylpiperazin-1-yl]-~{N}4-(oxan-4-yl)pyrimidine-2,4-diamine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##