data_S4T # _chem_comp.id S4T _chem_comp.name "N-(6-(4-(3-(4-((5,6-dihydroimidazo[1,2-a]pyrazin-7(8H)-yl)methyl)-3-(trifluoromethyl)phenyl)ureido)phenoxy)pyrimidin-4-yl)cyclopropanecarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H27 F3 N8 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{N}-[6-[4-[[4-(6,8-dihydro-5~{H}-imidazo[1,2-a]pyrazin-7-ylmethyl)-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]pyrimidin-4-yl]cyclopropanecarboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-06 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 592.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S4T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AW1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S4T C1 C1 C 0 1 Y N N 21.000 34.502 -15.904 4.159 -2.101 -1.643 C1 S4T 1 S4T C2 C2 C 0 1 Y N N 20.680 33.151 -15.974 4.464 -2.200 -0.294 C2 S4T 2 S4T C3 C3 C 0 1 Y N N 20.500 32.415 -14.807 3.449 -2.356 0.639 C3 S4T 3 S4T N6 N1 N 0 1 Y N N 22.214 30.978 -16.863 5.796 0.107 -0.484 N6 S4T 4 S4T C7 C4 C 0 1 Y N N 20.800 35.565 -8.683 -2.780 -1.370 -0.384 C7 S4T 5 S4T C8 C5 C 0 1 Y N N 20.296 36.751 -8.168 -2.542 -0.135 0.204 C8 S4T 6 S4T C9 C6 C 0 1 Y N N 19.869 36.808 -6.856 -3.538 0.483 0.935 C9 S4T 7 S4T C10 C7 C 0 1 Y N N 19.931 35.692 -6.017 -4.771 -0.126 1.081 C10 S4T 8 S4T C11 C8 C 0 1 Y N N 20.439 34.485 -6.532 -5.010 -1.357 0.495 C11 S4T 9 S4T C12 C9 C 0 1 Y N N 20.868 34.438 -7.861 -4.019 -1.980 -0.236 C12 S4T 10 S4T C13 C10 C 0 1 N N N 20.577 33.180 -5.778 -6.355 -2.018 0.657 C13 S4T 11 S4T C14 C11 C 0 1 N N N 19.454 35.781 -4.581 -5.855 0.551 1.879 C14 S4T 12 S4T C15 C12 C 0 1 N N N 20.493 37.991 -4.239 -7.976 1.707 1.701 C15 S4T 13 S4T C16 C13 C 0 1 N N N 20.473 39.216 -3.333 -9.124 1.998 0.727 C16 S4T 14 S4T C19 C14 C 0 1 Y N N 17.982 38.982 -3.404 -7.266 2.883 -0.676 C19 S4T 15 S4T C20 C15 C 0 1 N N N 18.072 37.764 -4.313 -6.188 2.201 0.134 C20 S4T 16 S4T C21 C16 C 0 1 Y N N 21.200 31.422 -17.589 6.428 -0.976 -0.042 C21 S4T 17 S4T C22 C17 C 0 1 Y N N 20.721 30.789 -18.732 7.783 -0.893 0.257 C22 S4T 18 S4T C24 C18 C 0 1 Y N N 22.762 29.842 -17.309 6.438 1.248 -0.640 C24 S4T 19 S4T C27 C19 C 0 1 N N N 18.733 27.286 -22.553 12.458 3.207 0.396 C27 S4T 20 S4T O2 O1 O 0 1 N N N 19.298 29.931 -21.123 9.694 2.661 0.072 O2 S4T 21 S4T C25 C20 C 0 1 N N N 20.093 28.992 -21.131 10.364 1.676 0.293 C25 S4T 22 S4T C26 C21 C 0 1 N N N 20.062 27.914 -22.213 11.853 1.805 0.488 C26 S4T 23 S4T C28 C22 C 0 1 N N N 19.356 28.231 -23.510 12.340 2.512 1.754 C28 S4T 24 S4T N7 N2 N 0 1 N N N 21.066 28.811 -20.201 9.778 0.464 0.364 N7 S4T 25 S4T C23 C23 C 0 1 Y N N 21.388 29.610 -19.089 8.423 0.329 0.079 C23 S4T 26 S4T N5 N3 N 0 1 Y N N 22.419 29.120 -18.383 7.721 1.367 -0.368 N5 S4T 27 S4T O1 O2 O 0 1 N N N 20.543 32.573 -17.246 5.760 -2.145 0.116 O1 S4T 28 S4T C4 C24 C 0 1 Y N N 20.647 33.029 -13.573 2.133 -2.412 0.224 C4 S4T 29 S4T C5 C25 C 0 1 Y N N 20.970 34.384 -13.492 1.826 -2.313 -1.127 C5 S4T 30 S4T C C26 C 0 1 Y N N 21.144 35.114 -14.668 2.843 -2.157 -2.059 C S4T 31 S4T N N4 N 0 1 N N N 21.138 35.079 -12.263 0.491 -2.370 -1.548 N S4T 32 S4T C6 C27 C 0 1 N N N 21.025 34.600 -10.977 -0.483 -1.852 -0.774 C6 S4T 33 S4T O O3 O 0 1 N N N 20.782 33.430 -10.692 -0.196 -1.255 0.245 O S4T 34 S4T N1 N5 N 0 1 N N N 21.216 35.581 -10.038 -1.775 -1.996 -1.130 N1 S4T 35 S4T F2 F1 F 0 1 N N N 19.401 32.687 -5.371 -6.375 -3.216 -0.065 F2 S4T 36 S4T F1 F2 F 0 1 N N N 21.130 32.203 -6.515 -6.583 -2.286 2.011 F1 S4T 37 S4T F F3 F 0 1 N N N 21.346 33.288 -4.686 -7.354 -1.166 0.176 F S4T 38 S4T N2 N6 N 0 1 N N N 19.336 37.116 -3.962 -6.826 1.164 0.963 N2 S4T 39 S4T N4 N7 N 0 1 Y N N 16.898 39.567 -2.925 -7.125 3.641 -1.721 N4 S4T 40 S4T C18 C28 C 0 1 Y N N 17.348 40.618 -2.161 -8.336 4.042 -2.142 C18 S4T 41 S4T C17 C29 C 0 1 Y N N 18.697 40.670 -2.178 -9.264 3.507 -1.321 C17 S4T 42 S4T N3 N8 N 0 1 Y N N 19.109 39.626 -2.972 -8.588 2.776 -0.393 N3 S4T 43 S4T H1 H1 H 0 1 N N N 21.136 35.074 -16.810 4.949 -1.975 -2.368 H1 S4T 44 S4T H2 H2 H 0 1 N N N 20.246 31.367 -14.863 3.687 -2.433 1.689 H2 S4T 45 S4T H3 H3 H 0 1 N N N 20.238 37.630 -8.793 -1.580 0.342 0.091 H3 S4T 46 S4T H4 H4 H 0 1 N N N 19.478 37.737 -6.469 -3.354 1.444 1.393 H4 S4T 47 S4T H5 H5 H 0 1 N N N 21.259 33.514 -8.260 -4.207 -2.940 -0.693 H5 S4T 48 S4T H6 H6 H 0 1 N N N 18.459 35.314 -4.539 -6.359 -0.186 2.504 H6 S4T 49 S4T H7 H7 H 0 1 N N N 20.158 35.199 -3.968 -5.413 1.322 2.510 H7 S4T 50 S4T H8 H8 H 0 1 N N N 21.421 37.428 -4.064 -7.682 2.630 2.202 H8 S4T 51 S4T H9 H9 H 0 1 N N N 20.455 38.318 -5.289 -8.306 0.981 2.444 H9 S4T 52 S4T H10 H10 H 0 1 N N N 21.027 38.983 -2.412 -9.539 1.061 0.357 H10 S4T 53 S4T H11 H11 H 0 1 N N N 20.965 40.049 -3.856 -9.900 2.571 1.234 H11 S4T 54 S4T H12 H12 H 0 1 N N N 18.076 38.071 -5.369 -5.461 1.741 -0.535 H12 S4T 55 S4T H13 H13 H 0 1 N N N 17.227 37.084 -4.132 -5.692 2.930 0.774 H13 S4T 56 S4T H14 H14 H 0 1 N N N 19.892 31.180 -19.304 8.325 -1.755 0.618 H14 S4T 57 S4T H15 H15 H 0 1 N N N 23.587 29.458 -16.728 5.896 2.109 -1.001 H15 S4T 58 S4T H16 H16 H 0 1 N N N 17.829 27.582 -22.000 13.454 3.298 -0.038 H16 S4T 59 S4T H17 H17 H 0 1 N N N 18.679 26.215 -22.797 11.780 4.036 0.194 H17 S4T 60 S4T H18 H18 H 0 1 N N N 20.947 27.264 -22.279 12.450 0.973 0.115 H18 S4T 61 S4T H19 H19 H 0 1 N N N 19.764 27.859 -24.462 13.259 2.146 2.214 H19 S4T 62 S4T H20 H20 H 0 1 N N N 18.914 29.226 -23.665 11.585 2.884 2.446 H20 S4T 63 S4T H21 H21 H 0 1 N N N 21.632 27.996 -20.324 10.301 -0.314 0.613 H21 S4T 64 S4T H22 H22 H 0 1 N N N 20.511 32.455 -12.668 1.342 -2.533 0.950 H22 S4T 65 S4T H23 H23 H 0 1 N N N 21.393 36.164 -14.615 2.605 -2.075 -3.110 H23 S4T 66 S4T H24 H24 H 0 1 N N N 21.370 36.048 -12.344 0.268 -2.782 -2.398 H24 S4T 67 S4T H25 H25 H 0 1 N N N 21.703 36.399 -10.343 -2.008 -2.534 -1.903 H25 S4T 68 S4T H27 H27 H 0 1 N N N 16.712 41.305 -1.623 -8.533 4.680 -2.991 H27 S4T 69 S4T H28 H28 H 0 1 N N N 19.325 41.387 -1.670 -10.334 3.635 -1.386 H28 S4T 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S4T C28 C27 SING N N 1 S4T C28 C26 SING N N 2 S4T C27 C26 SING N N 3 S4T C26 C25 SING N N 4 S4T C25 O2 DOUB N N 5 S4T C25 N7 SING N N 6 S4T N7 C23 SING N N 7 S4T C23 C22 DOUB Y N 8 S4T C23 N5 SING Y N 9 S4T C22 C21 SING Y N 10 S4T N5 C24 DOUB Y N 11 S4T C21 O1 SING N N 12 S4T C21 N6 DOUB Y N 13 S4T C24 N6 SING Y N 14 S4T O1 C2 SING N N 15 S4T C2 C1 DOUB Y N 16 S4T C2 C3 SING Y N 17 S4T C1 C SING Y N 18 S4T C3 C4 DOUB Y N 19 S4T C C5 DOUB Y N 20 S4T C4 C5 SING Y N 21 S4T C5 N SING N N 22 S4T N C6 SING N N 23 S4T C6 O DOUB N N 24 S4T C6 N1 SING N N 25 S4T N1 C7 SING N N 26 S4T C7 C8 DOUB Y N 27 S4T C7 C12 SING Y N 28 S4T C8 C9 SING Y N 29 S4T C12 C11 DOUB Y N 30 S4T C9 C10 DOUB Y N 31 S4T C11 C10 SING Y N 32 S4T C11 C13 SING N N 33 S4T F1 C13 SING N N 34 S4T C10 C14 SING N N 35 S4T C13 F2 SING N N 36 S4T C13 F SING N N 37 S4T C14 N2 SING N N 38 S4T C20 N2 SING N N 39 S4T C20 C19 SING N N 40 S4T C15 N2 SING N N 41 S4T C15 C16 SING N N 42 S4T C19 N3 SING Y N 43 S4T C19 N4 DOUB Y N 44 S4T C16 N3 SING N N 45 S4T N3 C17 SING Y N 46 S4T N4 C18 SING Y N 47 S4T C17 C18 DOUB Y N 48 S4T C1 H1 SING N N 49 S4T C3 H2 SING N N 50 S4T C8 H3 SING N N 51 S4T C9 H4 SING N N 52 S4T C12 H5 SING N N 53 S4T C14 H6 SING N N 54 S4T C14 H7 SING N N 55 S4T C15 H8 SING N N 56 S4T C15 H9 SING N N 57 S4T C16 H10 SING N N 58 S4T C16 H11 SING N N 59 S4T C20 H12 SING N N 60 S4T C20 H13 SING N N 61 S4T C22 H14 SING N N 62 S4T C24 H15 SING N N 63 S4T C27 H16 SING N N 64 S4T C27 H17 SING N N 65 S4T C26 H18 SING N N 66 S4T C28 H19 SING N N 67 S4T C28 H20 SING N N 68 S4T N7 H21 SING N N 69 S4T C4 H22 SING N N 70 S4T C H23 SING N N 71 S4T N H24 SING N N 72 S4T N1 H25 SING N N 73 S4T C18 H27 SING N N 74 S4T C17 H28 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S4T InChI InChI 1.03 "InChI=1S/C29H27F3N8O3/c30-29(31,32)23-13-21(4-3-19(23)15-39-11-12-40-10-9-33-25(40)16-39)37-28(42)36-20-5-7-22(8-6-20)43-26-14-24(34-17-35-26)38-27(41)18-1-2-18/h3-10,13-14,17-18H,1-2,11-12,15-16H2,(H2,36,37,42)(H,34,35,38,41)" S4T InChIKey InChI 1.03 JVAUXOQNQAAUBJ-UHFFFAOYSA-N S4T SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1cc(NC(=O)Nc2ccc(Oc3cc(NC(=O)C4CC4)ncn3)cc2)ccc1CN5CCn6ccnc6C5" S4T SMILES CACTVS 3.385 "FC(F)(F)c1cc(NC(=O)Nc2ccc(Oc3cc(NC(=O)C4CC4)ncn3)cc2)ccc1CN5CCn6ccnc6C5" S4T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC(=O)Nc2ccc(c(c2)C(F)(F)F)CN3CCn4ccnc4C3)Oc5cc(ncn5)NC(=O)C6CC6" S4T SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC(=O)Nc2ccc(c(c2)C(F)(F)F)CN3CCn4ccnc4C3)Oc5cc(ncn5)NC(=O)C6CC6" # _pdbx_chem_comp_identifier.comp_id S4T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[6-[4-[[4-(6,8-dihydro-5~{H}-imidazo[1,2-a]pyrazin-7-ylmethyl)-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]pyrimidin-4-yl]cyclopropanecarboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S4T "Create component" 2020-11-06 PDBE S4T "Initial release" 2021-03-03 RCSB S4T "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S4T _pdbx_chem_comp_synonyms.name "~{N}-[6-[4-[[4-(6,8-dihydro-5~{H}-imidazo[1,2-a]pyrazin-7-ylmethyl)-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]pyrimidin-4-yl]cyclopropanecarboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##