data_S51 # _chem_comp.id S51 _chem_comp.name "2-benzyl-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indole" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H25 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2-Benzyl-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-09-03 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.496 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S51 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3OOT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S51 C1 C1 C 0 1 Y N N -29.584 -51.492 -22.054 -5.003 -1.308 -1.673 C1 S51 1 S51 C2 C2 C 0 1 Y N N -30.348 -51.283 -20.905 -4.825 -1.233 -0.303 C2 S51 2 S51 C3 C3 C 0 1 Y N N -31.419 -52.142 -20.624 -3.553 -1.135 0.225 C3 S51 3 S51 C4 C4 C 0 1 Y N N -31.795 -53.227 -21.445 -2.452 -1.112 -0.620 C4 S51 4 S51 C5 C5 C 0 1 Y N N -30.996 -53.385 -22.598 -2.633 -1.188 -1.995 C5 S51 5 S51 C6 C6 C 0 1 Y N N -29.909 -52.555 -22.897 -3.908 -1.285 -2.517 C6 S51 6 S51 N12 N12 N 0 1 Y N N -32.837 -54.039 -21.134 -1.160 -1.012 -0.087 N12 S51 7 S51 C13 C13 C 0 1 Y N N -34.117 -53.649 -21.290 -0.557 -1.970 0.704 C13 S51 8 S51 C14 C14 C 0 1 Y N N -34.888 -54.769 -20.936 0.725 -1.499 1.031 C14 S51 9 S51 C15 C15 C 0 1 Y N N -33.991 -55.756 -20.501 0.852 -0.183 0.378 C15 S51 10 S51 C16 C16 C 0 1 Y N N -32.683 -55.327 -20.751 -0.322 0.038 -0.280 C16 S51 11 S51 C17 C17 C 0 1 Y N N -34.749 -52.455 -21.667 -0.972 -3.207 1.184 C17 S51 12 S51 C18 C18 C 0 1 Y N N -36.145 -52.393 -21.693 -0.127 -3.958 1.972 C18 S51 13 S51 C19 C19 C 0 1 Y N N -36.909 -53.515 -21.342 1.139 -3.492 2.295 C19 S51 14 S51 C20 C20 C 0 1 Y N N -36.289 -54.712 -20.962 1.568 -2.268 1.829 C20 S51 15 S51 C26 C26 C 0 1 Y N N -31.326 -56.500 -19.027 -1.200 2.335 -0.195 C26 S51 16 S51 C29 C29 C 0 1 Y N N -31.167 -57.858 -18.741 -0.370 3.322 0.303 C29 S51 17 S51 C30 C30 C 0 1 Y N N -31.123 -58.279 -17.416 -0.884 4.308 1.124 C30 S51 18 S51 C31 C31 C 0 1 Y N N -31.240 -57.329 -16.397 -2.228 4.307 1.447 C31 S51 19 S51 C32 C32 C 0 1 Y N N -31.422 -55.971 -16.680 -3.059 3.321 0.948 C32 S51 20 S51 C33 C33 C 0 1 Y N N -31.454 -55.550 -18.007 -2.544 2.334 0.128 C33 S51 21 S51 C39 C39 C 0 1 N N N -34.463 -57.157 -20.158 2.016 0.711 0.423 C39 S51 22 S51 N40 N40 N 0 1 N N N -35.202 -57.447 -19.063 3.006 0.576 -0.482 N40 S51 23 S51 O41 O41 O 0 1 N N N -34.117 -58.062 -20.906 2.087 1.575 1.278 O41 S51 24 S51 C42 C42 C 0 1 N N N -35.665 -56.431 -18.104 4.126 1.528 -0.524 C42 S51 25 S51 C43 C43 C 0 1 N N N -35.142 -56.826 -16.729 5.438 0.736 -0.507 C43 S51 26 S51 N44 N44 N 0 1 N N N -35.455 -58.207 -16.404 5.423 -0.253 -1.592 N44 S51 27 S51 C45 C45 C 0 1 N N N -35.166 -59.240 -17.390 4.350 -1.238 -1.401 C45 S51 28 S51 C46 C46 C 0 1 N N N -35.645 -58.830 -18.788 2.997 -0.531 -1.450 C46 S51 29 S51 C60 C60 C 0 1 N N N -31.387 -56.067 -20.467 -0.641 1.264 -1.096 C60 S51 30 S51 H1 H1 H 0 1 N N N -28.754 -50.841 -22.287 -5.998 -1.389 -2.083 H1 S51 31 S51 H2 H2 H 0 1 N N N -30.116 -50.466 -20.238 -5.682 -1.252 0.354 H2 S51 32 S51 H3 H3 H 0 1 N N N -31.991 -51.963 -19.726 -3.415 -1.076 1.295 H3 S51 33 S51 H5 H5 H 0 1 N N N -31.235 -54.185 -23.283 -1.778 -1.169 -2.655 H5 S51 34 S51 H6 H6 H 0 1 N N N -29.320 -52.738 -23.783 -4.050 -1.344 -3.586 H6 S51 35 S51 H17 H17 H 0 1 N N N -34.161 -51.590 -21.935 -1.956 -3.580 0.939 H17 S51 36 S51 H18 H18 H 0 1 N N N -36.637 -51.477 -21.985 -0.454 -4.919 2.342 H18 S51 37 S51 H19 H19 H 0 1 N N N -37.987 -53.456 -21.365 1.791 -4.091 2.913 H19 S51 38 S51 H20 H20 H 0 1 N N N -36.879 -55.576 -20.694 2.555 -1.908 2.082 H20 S51 39 S51 H29 H29 H 0 1 N N N -31.079 -58.576 -19.543 0.680 3.322 0.051 H29 S51 40 S51 H30 H30 H 0 1 N N N -31.000 -59.325 -17.178 -0.236 5.078 1.514 H30 S51 41 S51 H31 H31 H 0 1 N N N -31.189 -57.651 -15.367 -2.630 5.077 2.089 H31 S51 42 S51 H32 H32 H 0 1 N N N -31.536 -55.257 -15.878 -4.109 3.320 1.201 H32 S51 43 S51 H33 H33 H 0 1 N N N -31.576 -54.504 -18.246 -3.193 1.563 -0.262 H33 S51 44 S51 H42 H42 H 0 1 N N N -35.278 -55.441 -18.386 4.068 2.122 -1.436 H42 S51 45 S51 H42A H42A H 0 0 N N N -36.764 -56.393 -18.094 4.082 2.183 0.346 H42A S51 46 S51 H43 H43 H 0 1 N N N -34.049 -56.702 -16.719 6.276 1.419 -0.649 H43 S51 47 S51 H43A H43A H 0 0 N N N -35.607 -56.173 -15.975 5.542 0.225 0.450 H43A S51 48 S51 HN44 HN44 H 0 0 N N N -34.922 -58.435 -15.589 5.344 0.197 -2.492 HN44 S51 49 S51 H45 H45 H 0 1 N N N -34.079 -59.406 -17.422 4.399 -1.988 -2.190 H45 S51 50 S51 H45A H45A H 0 0 N N N -35.682 -60.166 -17.096 4.470 -1.722 -0.431 H45A S51 51 S51 H46 H46 H 0 1 N N N -36.743 -58.882 -18.832 2.207 -1.237 -1.192 H46 S51 52 S51 H46A H46A H 0 0 N N N -35.218 -59.511 -19.539 2.828 -0.139 -2.453 H46A S51 53 S51 H60 H60 H 0 1 N N N -31.332 -56.956 -21.112 0.268 1.629 -1.574 H60 S51 54 S51 H60A H60A H 0 0 N N N -30.539 -55.399 -20.678 -1.376 1.011 -1.860 H60A S51 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S51 C1 C2 DOUB Y N 1 S51 C1 C6 SING Y N 2 S51 C2 C3 SING Y N 3 S51 C3 C4 DOUB Y N 4 S51 C4 C5 SING Y N 5 S51 C4 N12 SING Y N 6 S51 C5 C6 DOUB Y N 7 S51 N12 C13 SING Y N 8 S51 N12 C16 SING Y N 9 S51 C13 C14 DOUB Y N 10 S51 C13 C17 SING Y N 11 S51 C14 C15 SING Y N 12 S51 C14 C20 SING Y N 13 S51 C15 C16 DOUB Y N 14 S51 C15 C39 SING N N 15 S51 C16 C60 SING N N 16 S51 C17 C18 DOUB Y N 17 S51 C18 C19 SING Y N 18 S51 C19 C20 DOUB Y N 19 S51 C26 C29 DOUB Y N 20 S51 C26 C33 SING Y N 21 S51 C26 C60 SING N N 22 S51 C29 C30 SING Y N 23 S51 C30 C31 DOUB Y N 24 S51 C31 C32 SING Y N 25 S51 C32 C33 DOUB Y N 26 S51 C39 N40 SING N N 27 S51 C39 O41 DOUB N N 28 S51 N40 C42 SING N N 29 S51 N40 C46 SING N N 30 S51 C42 C43 SING N N 31 S51 C43 N44 SING N N 32 S51 N44 C45 SING N N 33 S51 C45 C46 SING N N 34 S51 C1 H1 SING N N 35 S51 C2 H2 SING N N 36 S51 C3 H3 SING N N 37 S51 C5 H5 SING N N 38 S51 C6 H6 SING N N 39 S51 C17 H17 SING N N 40 S51 C18 H18 SING N N 41 S51 C19 H19 SING N N 42 S51 C20 H20 SING N N 43 S51 C29 H29 SING N N 44 S51 C30 H30 SING N N 45 S51 C31 H31 SING N N 46 S51 C32 H32 SING N N 47 S51 C33 H33 SING N N 48 S51 C42 H42 SING N N 49 S51 C42 H42A SING N N 50 S51 C43 H43 SING N N 51 S51 C43 H43A SING N N 52 S51 N44 HN44 SING N N 53 S51 C45 H45 SING N N 54 S51 C45 H45A SING N N 55 S51 C46 H46 SING N N 56 S51 C46 H46A SING N N 57 S51 C60 H60 SING N N 58 S51 C60 H60A SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S51 SMILES ACDLabs 12.01 "O=C(c3c1ccccc1n(c2ccccc2)c3Cc4ccccc4)N5CCNCC5" S51 SMILES_CANONICAL CACTVS 3.370 "O=C(N1CCNCC1)c2c(Cc3ccccc3)n(c4ccccc4)c5ccccc25" S51 SMILES CACTVS 3.370 "O=C(N1CCNCC1)c2c(Cc3ccccc3)n(c4ccccc4)c5ccccc25" S51 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)Cc2c(c3ccccc3n2c4ccccc4)C(=O)N5CCNCC5" S51 SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)Cc2c(c3ccccc3n2c4ccccc4)C(=O)N5CCNCC5" S51 InChI InChI 1.03 "InChI=1S/C26H25N3O/c30-26(28-17-15-27-16-18-28)25-22-13-7-8-14-23(22)29(21-11-5-2-6-12-21)24(25)19-20-9-3-1-4-10-20/h1-14,27H,15-19H2" S51 InChIKey InChI 1.03 FYDPGAJRQXSCCK-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S51 "SYSTEMATIC NAME" ACDLabs 12.01 "(2-benzyl-1-phenyl-1H-indol-3-yl)(piperazin-1-yl)methanone" S51 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[1-phenyl-2-(phenylmethyl)indol-3-yl]-piperazin-1-yl-methanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S51 "Create component" 2010-09-03 RCSB S51 "Modify aromatic_flag" 2011-06-04 RCSB S51 "Modify descriptor" 2011-06-04 RCSB S51 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S51 _pdbx_chem_comp_synonyms.name "(2-Benzyl-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##