data_S54 # _chem_comp.id S54 _chem_comp.name "N-(benzylsulfonyl)-D-valyl-N-(4-carbamimidoylbenzyl)-L-prolinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H33 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-25 _chem_comp.pdbx_modified_date 2012-04-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 499.626 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S54 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RM0 _chem_comp.pdbx_subcomponent_list "PMS DVA PRO 00S" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S54 C7 C7 C 0 1 N N N 14.696 -15.459 21.144 -5.353 0.078 -0.064 C PMS 1 S54 S8 S8 S 0 1 N N N 15.407 -16.761 21.941 -3.964 -0.347 -1.151 S PMS 2 S54 C4 C4 C 0 1 Y N N 13.700 -15.898 20.087 -6.148 -1.164 0.244 C1 PMS 3 S54 C5 C5 C 0 1 Y N N 12.340 -15.912 20.376 -7.201 -1.531 -0.573 C2 PMS 4 S54 C6 C6 C 0 1 Y N N 11.424 -16.324 19.413 -7.933 -2.669 -0.289 C3 PMS 5 S54 C1 C1 C 0 1 Y N N 11.865 -16.711 18.153 -7.609 -3.441 0.811 C4 PMS 6 S54 C2 C2 C 0 1 Y N N 13.223 -16.693 17.858 -6.556 -3.075 1.628 C5 PMS 7 S54 C3 C3 C 0 1 Y N N 14.137 -16.289 18.824 -5.826 -1.936 1.344 C6 PMS 8 S54 O22 O22 O 0 1 N N N 14.373 -17.539 22.557 -3.079 -1.248 -0.499 O2S PMS 9 S54 O23 O23 O 0 1 N N N 16.215 -17.532 21.031 -4.423 -0.599 -2.472 O1S PMS 10 S54 N9 N9 N 0 1 N N N 16.352 -16.183 23.113 -3.095 1.056 -1.281 N DVA 11 S54 C10 C10 C 0 1 N N R 17.679 -15.651 22.819 -2.486 1.653 -0.090 CA DVA 12 S54 C18 C18 C 0 1 N N N 18.601 -15.829 24.019 -2.898 3.123 0.012 CB DVA 13 S54 C19 C19 C 0 1 N N N 18.780 -17.307 24.378 -2.471 3.862 -1.258 CG1 DVA 14 S54 C20 C20 C 0 1 N N N 18.069 -15.073 25.221 -4.417 3.217 0.170 CG2 DVA 15 S54 C11 C11 C 0 1 N N N 17.592 -14.214 22.350 -0.985 1.559 -0.192 C DVA 16 S54 O17 O17 O 0 1 N N N 16.695 -13.465 22.732 -0.459 1.419 -1.276 O DVA 17 S54 N12 N12 N 0 1 N N N 18.519 -13.787 21.494 -0.228 1.630 0.920 N PRO 18 S54 C13 C13 C 0 1 N N S 18.458 -12.432 20.943 1.242 1.655 0.956 CA PRO 19 S54 C24 C24 C 0 1 N N N 17.146 -12.301 20.217 1.792 0.407 0.316 C PRO 20 S54 O33 O33 O 0 1 N N N 16.708 -13.243 19.557 1.036 -0.430 -0.130 O PRO 21 S54 C14 C14 C 0 1 N N N 19.599 -12.350 19.936 1.663 1.714 2.440 CB PRO 22 S54 C15 C15 C 0 1 N N N 20.470 -13.561 20.201 0.420 1.147 3.176 CG PRO 23 S54 C16 C16 C 0 1 N N N 19.610 -14.572 20.944 -0.736 1.701 2.303 CD PRO 24 S54 N25 N25 N 0 1 N N N 16.483 -11.157 20.330 3.125 0.220 0.240 N23 00S 25 S54 C26 C26 C 0 1 N N N 15.204 -10.911 19.682 3.659 -0.994 -0.382 C16 00S 26 S54 C27 C27 C 0 1 Y N N 14.130 -10.925 20.747 5.165 -0.958 -0.341 C17 00S 27 S54 C32 C32 C 0 1 Y N N 13.869 -9.794 21.500 5.870 -0.393 -1.389 C22 00S 28 S54 C31 C31 C 0 1 Y N N 12.884 -9.835 22.476 7.249 -0.352 -1.354 C21 00S 29 S54 C30 C30 C 0 1 Y N N 12.148 -10.987 22.707 7.932 -0.891 -0.264 C24 00S 30 S54 C34 C34 C 0 1 N N N 11.089 -11.011 23.767 9.412 -0.855 -0.222 C27 00S 31 S54 N35 N35 N 0 1 N N N 10.481 -12.087 24.067 10.048 -1.359 0.797 N35 00S 32 S54 N36 N36 N 0 1 N N N 10.789 -9.889 24.408 10.117 -0.289 -1.262 N34 00S 33 S54 C29 C29 C 0 1 Y N N 12.416 -12.121 21.958 7.216 -1.464 0.787 C19 00S 34 S54 C28 C28 C 0 1 Y N N 13.402 -12.084 20.977 5.838 -1.494 0.743 C18 00S 35 S54 H7 H7 H 0 1 N N N 15.489 -14.875 20.654 -5.994 0.806 -0.562 H2A PMS 36 S54 H7A H7A H 0 1 N N N 14.167 -14.843 21.886 -4.971 0.505 0.863 H1 PMS 37 S54 H5 H5 H 0 1 N N N 11.994 -15.602 21.351 -7.454 -0.927 -1.432 H2 PMS 38 S54 H6 H6 H 0 1 N N N 10.369 -16.343 19.645 -8.756 -2.955 -0.927 H3 PMS 39 S54 H1 H1 H 0 1 N N N 11.153 -17.025 17.404 -8.177 -4.334 1.030 H4 PMS 40 S54 H2 H2 H 0 1 N N N 13.568 -16.993 16.879 -6.304 -3.678 2.487 H5 PMS 41 S54 H3 H3 H 0 1 N N N 15.192 -16.278 18.594 -5.003 -1.650 1.982 H6 PMS 42 S54 HN9 HN9 H 0 1 N N N 15.842 -15.428 23.525 -2.990 1.484 -2.145 H DVA 43 S54 H10 H10 H 0 1 N N N 18.121 -16.222 21.989 -2.824 1.119 0.798 HA DVA 44 S54 H18 H18 H 0 1 N N N 19.583 -15.420 23.739 -2.414 3.577 0.877 HB DVA 45 S54 H19 H19 H 0 1 N N N 19.450 -17.395 25.246 -3.015 3.460 -2.112 HG11 DVA 46 S54 H19A H19A H 0 0 N N N 17.802 -17.746 24.624 -2.694 4.924 -1.153 HG12 DVA 47 S54 H19B H19B H 0 0 N N N 19.217 -17.842 23.522 -1.401 3.729 -1.413 HG13 DVA 48 S54 H20 H20 H 0 1 N N N 18.749 -15.215 26.074 -4.734 2.595 1.008 HG21 DVA 49 S54 H20A H20A H 0 0 N N N 18.002 -14.002 24.980 -4.700 4.253 0.359 HG22 DVA 50 S54 H20B H20B H 0 0 N N N 17.070 -15.454 25.481 -4.900 2.870 -0.743 HG23 DVA 51 S54 H13 H13 H 0 1 N N N 18.539 -11.647 21.710 1.610 2.537 0.431 HA PRO 52 S54 H14 H14 H 0 1 N N N 19.212 -12.367 18.907 2.536 1.086 2.618 HB2 PRO 53 S54 H14A H14A H 0 0 N N N 20.172 -11.421 20.072 1.857 2.742 2.745 HB3 PRO 54 S54 H15 H15 H 0 1 N N N 20.829 -13.988 19.253 0.429 0.057 3.175 HG2 PRO 55 S54 H15A H15A H 0 0 N N N 21.341 -13.279 20.811 0.359 1.534 4.193 HG3 PRO 56 S54 H16 H16 H 0 1 N N N 20.182 -15.070 21.741 -0.958 2.733 2.572 HD2 PRO 57 S54 H16A H16A H 0 0 N N N 19.235 -15.351 20.264 -1.625 1.079 2.412 HD3 PRO 58 S54 HN25 HN25 H 0 0 N N N 16.882 -10.429 20.887 3.729 0.889 0.596 HN23 00S 59 S54 H26 H26 H 0 1 N N N 15.220 -9.933 19.178 3.302 -1.868 0.161 H16 00S 60 S54 H26A H26A H 0 0 N N N 15.004 -11.695 18.936 3.326 -1.048 -1.419 H16A 00S 61 S54 H32 H32 H 0 1 N N N 14.428 -8.886 21.329 5.340 0.020 -2.234 H22 00S 62 S54 H31 H31 H 0 1 N N N 12.687 -8.953 23.067 7.798 0.093 -2.170 H21 00S 63 S54 HN35 HN35 H 0 0 N N N 9.809 -11.947 24.795 11.017 -1.335 0.824 HN35 00S 64 S54 HN36 HN36 H 0 0 N N N 10.089 -9.893 25.122 9.644 0.086 -2.021 HN34 00S 65 S54 HN3A HN3A H 0 0 N N N 11.263 -9.039 24.177 11.086 -0.265 -1.235 HN3A 00S 66 S54 H29 H29 H 0 1 N N N 11.862 -13.031 22.135 7.740 -1.883 1.634 H19 00S 67 S54 H28 H28 H 0 1 N N N 13.603 -12.967 20.388 5.282 -1.938 1.556 H18 00S 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S54 C1 C2 DOUB Y N 1 S54 C1 C6 SING Y N 2 S54 C2 C3 SING Y N 3 S54 C3 C4 DOUB Y N 4 S54 C4 C5 SING Y N 5 S54 C4 C7 SING N N 6 S54 C5 C6 DOUB Y N 7 S54 C7 S8 SING N N 8 S54 S8 N9 SING N N 9 S54 S8 O22 DOUB N N 10 S54 S8 O23 DOUB N N 11 S54 N9 C10 SING N N 12 S54 C10 C11 SING N N 13 S54 C10 C18 SING N N 14 S54 C11 N12 SING N N 15 S54 C11 O17 DOUB N N 16 S54 N12 C13 SING N N 17 S54 N12 C16 SING N N 18 S54 C13 C14 SING N N 19 S54 C13 C24 SING N N 20 S54 C14 C15 SING N N 21 S54 C15 C16 SING N N 22 S54 C18 C19 SING N N 23 S54 C18 C20 SING N N 24 S54 C24 N25 SING N N 25 S54 C24 O33 DOUB N N 26 S54 N25 C26 SING N N 27 S54 C26 C27 SING N N 28 S54 C27 C28 DOUB Y N 29 S54 C27 C32 SING Y N 30 S54 C28 C29 SING Y N 31 S54 C29 C30 DOUB Y N 32 S54 C30 C31 SING Y N 33 S54 C30 C34 SING N N 34 S54 C31 C32 DOUB Y N 35 S54 C34 N35 DOUB N N 36 S54 C34 N36 SING N N 37 S54 C1 H1 SING N N 38 S54 C2 H2 SING N N 39 S54 C3 H3 SING N N 40 S54 C5 H5 SING N N 41 S54 C6 H6 SING N N 42 S54 C7 H7 SING N N 43 S54 C7 H7A SING N N 44 S54 N9 HN9 SING N N 45 S54 C10 H10 SING N N 46 S54 C13 H13 SING N N 47 S54 C14 H14 SING N N 48 S54 C14 H14A SING N N 49 S54 C15 H15 SING N N 50 S54 C15 H15A SING N N 51 S54 C16 H16 SING N N 52 S54 C16 H16A SING N N 53 S54 C18 H18 SING N N 54 S54 C19 H19 SING N N 55 S54 C19 H19A SING N N 56 S54 C19 H19B SING N N 57 S54 C20 H20 SING N N 58 S54 C20 H20A SING N N 59 S54 C20 H20B SING N N 60 S54 N25 HN25 SING N N 61 S54 C26 H26 SING N N 62 S54 C26 H26A SING N N 63 S54 C28 H28 SING N N 64 S54 C29 H29 SING N N 65 S54 C31 H31 SING N N 66 S54 C32 H32 SING N N 67 S54 N35 HN35 SING N N 68 S54 N36 HN36 SING N N 69 S54 N36 HN3A SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S54 SMILES ACDLabs 12.01 "O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)C(NS(=O)(=O)Cc2ccccc2)C(C)C)CCC3" S54 SMILES_CANONICAL CACTVS 3.370 "CC(C)[C@@H](N[S](=O)(=O)Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCc3ccc(cc3)C(N)=N" S54 SMILES CACTVS 3.370 "CC(C)[CH](N[S](=O)(=O)Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCc3ccc(cc3)C(N)=N" S54 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](C(C)C)NS(=O)(=O)Cc3ccccc3)\\N" S54 SMILES "OpenEye OEToolkits" 1.7.2 "CC(C)C(C(=O)N1CCCC1C(=O)NCc2ccc(cc2)C(=N)N)NS(=O)(=O)Cc3ccccc3" S54 InChI InChI 1.03 "InChI=1S/C25H33N5O4S/c1-17(2)22(29-35(33,34)16-19-7-4-3-5-8-19)25(32)30-14-6-9-21(30)24(31)28-15-18-10-12-20(13-11-18)23(26)27/h3-5,7-8,10-13,17,21-22,29H,6,9,14-16H2,1-2H3,(H3,26,27)(H,28,31)/t21-,22+/m0/s1" S54 InChIKey InChI 1.03 BTZOUFLORPKMGE-FCHUYYIVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S54 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(benzylsulfonyl)-D-valyl-N-(4-carbamimidoylbenzyl)-L-prolinamide" S54 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[(2R)-3-methyl-2-[(phenylmethyl)sulfonylamino]butanoyl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S54 "Create component" 2011-04-25 PDBJ S54 "Modify aromatic_flag" 2011-06-04 RCSB S54 "Modify descriptor" 2011-06-04 RCSB #