data_S5R # _chem_comp.id S5R _chem_comp.name "(2~{R})-2-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-10 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S5R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8IYT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S5R C21 C1 C 0 1 Y N N N N N 36.519 9.513 46.328 -0.232 3.694 0.371 C21 S5R 1 S5R N N1 N 0 1 N N N N N N 37.457 7.395 49.927 -1.839 -0.477 0.170 N S5R 2 S5R CA C2 C 0 1 N N R N N N 37.628 6.641 51.195 -2.642 -1.599 -0.336 CA S5R 3 S5R C2 C3 C 0 1 N N N N N N 38.955 6.885 51.895 -1.754 -2.531 -1.162 C2 S5R 4 S5R CB C4 C 0 1 N N N N N N 37.431 5.170 50.817 -3.773 -1.060 -1.214 CB S5R 5 S5R OG O1 O 0 1 N N N N N N 36.256 5.220 49.971 -4.534 -0.101 -0.477 OG S5R 6 S5R C C5 C 0 1 N N N N N N 36.478 7.032 52.096 -3.228 -2.361 0.825 C S5R 7 S5R O O2 O 0 1 N N N N N N 35.725 7.980 51.764 -4.327 -2.854 0.732 O S5R 8 S5R OXT O3 O 0 1 N N N N N N 36.252 6.371 53.137 -2.528 -2.492 1.963 OXT S5R 9 S5R O3P O4 O 0 1 N N N N N N 43.285 8.849 48.711 3.980 -1.713 -1.474 O3P S5R 10 S5R P P1 P 0 1 N N N N N N 42.215 9.580 49.454 3.987 -1.204 -0.084 P S5R 11 S5R O1P O5 O 0 1 N N N N N N 42.646 10.846 50.107 3.537 -2.379 0.920 O1P S5R 12 S5R O2P O6 O 0 1 N N N N N N 41.547 8.664 50.458 5.470 -0.709 0.298 O2P S5R 13 S5R O4P O7 O 0 1 N N N N N N 41.097 9.895 48.373 2.961 0.031 0.040 O4P S5R 14 S5R C5A C6 C 0 1 N N N N N N 39.970 10.784 48.651 1.584 -0.061 -0.334 C5A S5R 15 S5R C5 C7 C 0 1 Y N N N N N 38.791 10.270 47.869 0.909 1.265 -0.094 C5 S5R 16 S5R C6 C8 C 0 1 Y N N N N N 38.347 10.962 46.732 1.625 2.332 0.416 C6 S5R 17 S5R N1 N2 N 0 1 Y N N N N N 37.277 10.591 46.004 1.045 3.497 0.630 N1 S5R 18 S5R C4 C9 C 0 1 Y N N N N N 37.969 9.133 48.347 -0.436 1.429 -0.380 C4 S5R 19 S5R C4A C10 C 0 1 N N N N N N 38.408 8.420 49.598 -1.251 0.290 -0.937 C4A S5R 20 S5R C3 C11 C 0 1 Y N N N N N 36.849 8.730 47.530 -1.017 2.671 -0.142 C3 S5R 21 S5R O3 O8 O 0 1 N N N N N N 36.064 7.699 47.853 -2.333 2.878 -0.408 O3 S5R 22 S5R C2A C12 C 0 1 N N N N N N 35.335 9.152 45.506 -0.848 5.043 0.640 C2A S5R 23 S5R H1 H1 H 0 1 N N N N N N 36.557 7.829 49.962 -1.125 -0.801 0.805 H1 S5R 24 S5R H3 H3 H 0 1 N N N N N N 38.997 6.291 52.820 -0.948 -2.914 -0.536 H3 S5R 25 S5R H4 H4 H 0 1 N N N N N N 39.780 6.588 51.231 -2.350 -3.363 -1.537 H4 S5R 26 S5R H5 H5 H 0 1 N N N N N N 39.049 7.953 52.141 -1.331 -1.980 -2.001 H5 S5R 27 S5R H6 H6 H 0 1 N N N N N N 37.253 4.551 51.708 -3.351 -0.586 -2.100 H6 S5R 28 S5R H7 H7 H 0 1 N N N N N N 38.301 4.781 50.267 -4.421 -1.883 -1.517 H7 S5R 29 S5R H8 H8 H 0 1 N N N N N N 36.041 4.343 49.675 -5.270 0.283 -0.974 H8 S5R 30 S5R H9 H9 H 0 1 N N N N N N 35.475 6.710 53.566 -2.945 -2.989 2.680 H9 S5R 31 S5R H10 H10 H 0 1 N N N N N N 43.570 10.991 49.939 3.519 -2.115 1.850 H10 S5R 32 S5R H11 H11 H 0 1 N N N N N N 41.944 7.802 50.414 6.142 -1.403 0.245 H11 S5R 33 S5R H12 H12 H 0 1 N N N N N N 40.213 11.809 48.336 1.511 -0.319 -1.390 H12 S5R 34 S5R H13 H13 H 0 1 N N N N N N 39.741 10.776 49.727 1.096 -0.830 0.264 H13 S5R 35 S5R H14 H14 H 0 1 N N N N N N 38.894 11.841 46.424 2.675 2.210 0.642 H14 S5R 36 S5R H15 H15 H 0 1 N N N N N N 39.395 7.964 49.432 -0.609 -0.361 -1.529 H15 S5R 37 S5R H16 H16 H 0 1 N N N N N N 38.471 9.140 50.427 -2.047 0.687 -1.567 H16 S5R 38 S5R H17 H17 H 0 1 N N N N N N 36.391 7.287 48.644 -2.509 3.193 -1.306 H17 S5R 39 S5R H18 H18 H 0 1 N N N N N N 35.229 9.870 44.679 -1.232 5.069 1.660 H18 S5R 40 S5R H19 H19 H 0 1 N N N N N N 35.467 8.139 45.097 -0.093 5.818 0.516 H19 S5R 41 S5R H20 H20 H 0 1 N N N N N N 34.432 9.179 46.133 -1.665 5.215 -0.061 H20 S5R 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S5R C2A C21 SING N N 1 S5R N1 C21 DOUB Y N 2 S5R N1 C6 SING Y N 3 S5R C21 C3 SING Y N 4 S5R C6 C5 DOUB Y N 5 S5R C3 O3 SING N N 6 S5R C3 C4 DOUB Y N 7 S5R C5 C4 SING Y N 8 S5R C5 C5A SING N N 9 S5R C4 C4A SING N N 10 S5R O4P C5A SING N N 11 S5R O4P P SING N N 12 S5R O3P P DOUB N N 13 S5R P O1P SING N N 14 S5R P O2P SING N N 15 S5R C4A N SING N N 16 S5R N CA SING N N 17 S5R OG CB SING N N 18 S5R CB CA SING N N 19 S5R CA C2 SING N N 20 S5R CA C SING N N 21 S5R O C DOUB N N 22 S5R C OXT SING N N 23 S5R N H1 SING N N 24 S5R C2 H3 SING N N 25 S5R C2 H4 SING N N 26 S5R C2 H5 SING N N 27 S5R CB H6 SING N N 28 S5R CB H7 SING N N 29 S5R OG H8 SING N N 30 S5R OXT H9 SING N N 31 S5R O1P H10 SING N N 32 S5R O2P H11 SING N N 33 S5R C5A H12 SING N N 34 S5R C5A H13 SING N N 35 S5R C6 H14 SING N N 36 S5R C4A H15 SING N N 37 S5R C4A H16 SING N N 38 S5R O3 H17 SING N N 39 S5R C2A H18 SING N N 40 S5R C2A H19 SING N N 41 S5R C2A H20 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S5R InChI InChI 1.06 "InChI=1S/C12H19N2O8P/c1-7-10(16)9(4-14-12(2,6-15)11(17)18)8(3-13-7)5-22-23(19,20)21/h3,14-16H,4-6H2,1-2H3,(H,17,18)(H2,19,20,21)/t12-/m1/s1" S5R InChIKey InChI 1.06 FVZJSLHHGJVQIU-GFCCVEGCSA-N S5R SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@](C)(CO)C(O)=O)c1O" S5R SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[C](C)(CO)C(O)=O)c1O" S5R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@](C)(CO)C(=O)O)O" S5R SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C)(CO)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id S5R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S5R "Create component" 2023-04-10 PDBJ S5R "Initial release" 2024-04-10 RCSB #