data_S6D
#
_chem_comp.id S6D
_chem_comp.name "2-[(1~{S},5~{R})-3-[2-[(2~{S})-2-methylazetidin-1-yl]-6-(trifluoromethyl)pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-yl]ethanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H19 F3 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-04
_chem_comp.pdbx_modified_date 2020-09-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 356.343
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S6D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6W0Z
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S6D N3 N1 N 0 1 Y N N -4.176 0.194 18.065 0.591 0.838 0.623 N3 S6D 1
S6D C4 C1 C 0 1 N N N -2.310 -1.264 15.243 2.673 2.994 1.192 C4 S6D 2
S6D N2 N2 N 0 1 Y N N -2.932 -1.851 18.103 2.631 0.103 -0.183 N2 S6D 3
S6D C7 C2 C 0 1 Y N N -4.523 -1.339 19.871 1.041 -1.464 0.503 C7 S6D 4
S6D C6 C3 C 0 1 Y N N -3.572 -2.150 19.241 2.288 -1.165 -0.010 C6 S6D 5
S6D C9 C4 C 0 1 N N N -6.498 0.676 20.908 -1.810 0.602 1.602 C9 S6D 6
S6D C13 C5 C 0 1 N N N -6.154 3.229 21.252 -4.070 0.158 0.318 C13 S6D 7
S6D C8 C6 C 0 1 Y N N -4.781 -0.127 19.214 0.182 -0.411 0.822 C8 S6D 8
S6D C16 C7 C 0 1 N N N -3.187 -3.478 19.833 3.249 -2.269 -0.370 C16 S6D 9
S6D C1 C8 C 0 1 N N N -2.756 2.043 15.665 3.676 2.834 -2.044 C1 S6D 10
S6D C2 C9 C 0 1 N N S -3.278 0.647 15.369 3.577 2.460 -0.564 C2 S6D 11
S6D C3 C10 C 0 1 N N N -2.595 -0.140 14.234 3.802 3.648 0.383 C3 S6D 12
S6D N1 N3 N 0 1 N N N -2.676 -0.324 16.323 2.190 2.395 -0.066 N1 S6D 13
S6D C5 C11 C 0 1 Y N N -3.284 -0.676 17.558 1.795 1.083 0.130 C5 S6D 14
S6D N4 N4 N 0 1 N N N -5.667 0.810 19.711 -1.078 -0.664 1.339 N4 S6D 15
S6D C10 C12 C 0 1 N N S -7.096 2.061 21.140 -3.298 0.191 1.639 C10 S6D 16
S6D C11 C13 C 0 1 N N R -6.790 2.897 19.932 -3.374 -1.111 0.815 C11 S6D 17
S6D C12 C14 C 0 1 N N N -5.875 2.083 19.022 -1.926 -1.377 0.350 C12 S6D 18
S6D C14 C15 C 0 1 N N N -6.527 4.521 21.993 -5.597 0.200 0.393 C14 S6D 19
S6D C15 C16 C 0 1 N N N -5.593 5.672 21.690 -6.167 0.287 -0.999 C15 S6D 20
S6D O1 O1 O 0 1 N N N -4.929 5.744 20.667 -5.426 0.312 -1.954 O1 S6D 21
S6D O2 O2 O 0 1 N N N -5.558 6.589 22.632 -7.496 0.336 -1.179 O2 S6D 22
S6D F1 F1 F 0 1 N N N -3.382 -4.489 18.980 2.722 -3.019 -1.427 F1 S6D 23
S6D F2 F2 F 0 1 N N N -1.911 -3.523 20.172 4.473 -1.714 -0.757 F2 S6D 24
S6D F3 F3 F 0 1 N N N -3.863 -3.765 20.928 3.442 -3.099 0.740 F3 S6D 25
S6D H1 H1 H 0 1 N N N -2.974 -2.136 15.153 3.026 2.259 1.916 H1 S6D 26
S6D H2 H2 H 0 1 N N N -1.263 -1.601 15.267 1.977 3.712 1.627 H2 S6D 27
S6D H3 H3 H 0 1 N N N -5.018 -1.623 20.788 0.737 -2.490 0.653 H3 S6D 28
S6D H4 H4 H 0 1 N N N -7.294 -0.065 20.743 -1.508 1.024 2.561 H4 S6D 29
S6D H5 H5 H 0 1 N N N -5.886 0.371 21.770 -1.633 1.319 0.800 H5 S6D 30
S6D H6 H6 H 0 1 N N N -5.092 2.956 21.332 -3.627 0.671 -0.535 H6 S6D 31
S6D H7 H7 H 0 1 N N N -3.332 2.483 16.492 3.225 3.814 -2.202 H7 S6D 32
S6D H8 H8 H 0 1 N N N -1.695 1.985 15.948 4.724 2.864 -2.342 H8 S6D 33
S6D H9 H9 H 0 1 N N N -2.863 2.672 14.769 3.149 2.091 -2.642 H9 S6D 34
S6D H10 H10 H 0 1 N N N -4.376 0.597 15.322 4.171 1.583 -0.310 H10 S6D 35
S6D H11 H11 H 0 1 N N N -1.696 0.342 13.823 3.541 4.616 -0.045 H11 S6D 36
S6D H12 H12 H 0 1 N N N -3.266 -0.427 13.411 4.770 3.642 0.883 H12 S6D 37
S6D H13 H13 H 0 1 N N N -8.092 2.133 21.602 -3.839 0.336 2.574 H13 S6D 38
S6D H14 H14 H 0 1 N N N -7.556 3.556 19.497 -3.975 -1.961 1.139 H14 S6D 39
S6D H15 H15 H 0 1 N N N -4.916 2.603 18.877 -1.768 -0.972 -0.649 H15 S6D 40
S6D H16 H16 H 0 1 N N N -6.353 1.917 18.045 -1.712 -2.446 0.366 H16 S6D 41
S6D H17 H17 H 0 1 N N N -7.546 4.811 21.699 -5.963 -0.704 0.879 H17 S6D 42
S6D H18 H18 H 0 1 N N N -6.500 4.324 23.075 -5.909 1.073 0.968 H18 S6D 43
S6D H19 H19 H 0 1 N N N -4.954 7.278 22.381 -7.814 0.391 -2.091 H19 S6D 44
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S6D C3 C4 SING N N 1
S6D C3 C2 SING N N 2
S6D C4 N1 SING N N 3
S6D C2 C1 SING N N 4
S6D C2 N1 SING N N 5
S6D N1 C5 SING N N 6
S6D C5 N3 DOUB Y N 7
S6D C5 N2 SING Y N 8
S6D N3 C8 SING Y N 9
S6D N2 C6 DOUB Y N 10
S6D F1 C16 SING N N 11
S6D C12 N4 SING N N 12
S6D C12 C11 SING N N 13
S6D C8 N4 SING N N 14
S6D C8 C7 DOUB Y N 15
S6D C6 C16 SING N N 16
S6D C6 C7 SING Y N 17
S6D N4 C9 SING N N 18
S6D C16 F2 SING N N 19
S6D C16 F3 SING N N 20
S6D C11 C10 SING N N 21
S6D C11 C13 SING N N 22
S6D O1 C15 DOUB N N 23
S6D C9 C10 SING N N 24
S6D C10 C13 SING N N 25
S6D C13 C14 SING N N 26
S6D C15 C14 SING N N 27
S6D C15 O2 SING N N 28
S6D C4 H1 SING N N 29
S6D C4 H2 SING N N 30
S6D C7 H3 SING N N 31
S6D C9 H4 SING N N 32
S6D C9 H5 SING N N 33
S6D C13 H6 SING N N 34
S6D C1 H7 SING N N 35
S6D C1 H8 SING N N 36
S6D C1 H9 SING N N 37
S6D C2 H10 SING N N 38
S6D C3 H11 SING N N 39
S6D C3 H12 SING N N 40
S6D C10 H13 SING N N 41
S6D C11 H14 SING N N 42
S6D C12 H15 SING N N 43
S6D C12 H16 SING N N 44
S6D C14 H17 SING N N 45
S6D C14 H18 SING N N 46
S6D O2 H19 SING N N 47
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S6D InChI InChI 1.03 "InChI=1S/C16H19F3N4O2/c1-8-2-3-23(8)15-20-12(16(17,18)19)5-13(21-15)22-6-10-9(4-14(24)25)11(10)7-22/h5,8-11H,2-4,6-7H2,1H3,(H,24,25)/t8-,9-,10-,11+/m0/s1"
S6D InChIKey InChI 1.03 MDUYWDNWFXSMJJ-XWLWVQCSSA-N
S6D SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CCN1c2nc(cc(n2)C(F)(F)F)N3C[C@@H]4[C@H](C3)C4CC(O)=O"
S6D SMILES CACTVS 3.385 "C[CH]1CCN1c2nc(cc(n2)C(F)(F)F)N3C[CH]4[CH](C3)C4CC(O)=O"
S6D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCN1c2nc(cc(n2)N3C[C@@H]4[C@H](C3)C4CC(=O)O)C(F)(F)F"
S6D SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCN1c2nc(cc(n2)N3CC4C(C3)C4CC(=O)O)C(F)(F)F"
#
_pdbx_chem_comp_identifier.comp_id S6D
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-[(1~{S},5~{R})-3-[2-[(2~{S})-2-methylazetidin-1-yl]-6-(trifluoromethyl)pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-yl]ethanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S6D "Create component" 2020-03-04 RCSB
S6D "Initial release" 2020-09-23 RCSB
##