data_S6J
#
_chem_comp.id S6J
_chem_comp.name "6-[(1~{S},5~{R})-6-(hydroxymethyl)-3-azabicyclo[3.1.0]hexan-3-yl]-2-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H19 F3 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-04
_chem_comp.pdbx_modified_date 2020-09-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 368.354
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S6J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6W0X
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S6J C4 C1 C 0 1 N N R -2.953 -0.850 14.754 -0.908 4.113 0.300 C4 S6J 1
S6J C6 C2 C 0 1 N N N -2.656 -1.986 15.743 -1.900 2.981 0.622 C6 S6J 2
S6J C9 C3 C 0 1 Y N N -3.337 -2.540 18.789 -2.134 0.003 -0.273 C9 S6J 3
S6J C20 C4 C 0 1 N N N -6.243 1.589 19.087 2.537 0.043 1.023 C20 S6J 4
S6J C21 C5 C 0 1 N N N -6.312 3.021 21.206 4.559 -0.889 -0.388 C21 S6J 5
S6J C8 C6 C 0 1 Y N N -3.609 -1.350 18.036 -1.070 0.916 -0.165 C8 S6J 6
S6J C18 C7 C 0 1 N N S -7.011 2.590 19.944 3.950 -0.577 0.980 C18 S6J 7
S6J C16 C8 C 0 1 N N R -7.355 1.936 21.255 3.757 -1.968 0.342 C16 S6J 8
S6J C1 C9 C 0 1 N N N -2.881 1.406 16.082 0.621 3.444 -1.655 C1 S6J 9
S6J C2 C10 C 0 1 N N S -3.459 0.008 15.925 -0.022 3.024 -0.332 C2 S6J 10
S6J N7 N1 N 0 1 N N N -2.962 -1.053 16.848 -1.269 2.245 -0.496 N7 S6J 11
S6J C10 C11 C 0 1 Y N N -4.090 -2.703 19.966 -1.912 -1.339 0.067 C10 S6J 12
S6J C11 C12 C 0 1 Y N N -5.003 -1.737 20.383 -0.655 -1.710 0.495 C11 S6J 13
S6J C12 C13 C 0 1 Y N N -5.175 -0.596 19.602 0.352 -0.750 0.577 C12 S6J 14
S6J N13 N2 N 0 1 Y N N -4.495 -0.427 18.458 0.120 0.513 0.251 N13 S6J 15
S6J N14 N3 N 0 1 N N N -6.035 0.426 19.954 1.616 -1.122 1.007 N14 S6J 16
S6J C15 C14 C 0 1 N N N -6.862 0.490 21.172 2.244 -2.071 0.053 C15 S6J 17
S6J C23 C15 C 0 1 N N N -6.625 4.375 21.828 6.077 -1.066 -0.460 C23 S6J 18
S6J O24 O1 O 0 1 N N N -5.632 5.346 21.468 6.640 -0.032 -1.272 O24 S6J 19
S6J C25 C16 C 0 1 N N N -3.947 -3.954 20.790 -3.023 -2.353 -0.032 C25 S6J 20
S6J F26 F1 F 0 1 N N N -4.299 -5.053 20.100 -4.078 -1.973 0.804 F26 S6J 21
S6J F27 F2 F 0 1 N N N -4.729 -3.957 21.880 -3.477 -2.420 -1.354 F27 S6J 22
S6J F28 F3 F 0 1 N N N -2.674 -4.140 21.244 -2.545 -3.608 0.361 F28 S6J 23
S6J C29 C17 C 0 1 N N N -2.282 -3.444 18.418 -3.424 0.438 -0.717 C29 S6J 24
S6J N30 N4 N 0 1 N N N -1.432 -4.132 18.084 -4.447 0.783 -1.069 N30 S6J 25
S6J O31 O2 O 0 1 N N N -4.067 -1.142 13.909 -0.334 4.721 1.459 O31 S6J 26
S6J H1 H1 H 0 1 N N N -2.061 -0.445 14.254 -1.289 4.840 -0.417 H1 S6J 27
S6J H2 H2 H 0 1 N N N -3.341 -2.844 15.669 -1.740 2.520 1.597 H2 S6J 28
S6J H3 H3 H 0 1 N N N -1.616 -2.344 15.725 -2.942 3.245 0.441 H3 S6J 29
S6J H4 H4 H 0 1 N N N -6.830 1.309 18.200 2.403 0.621 1.938 H4 S6J 30
S6J H5 H5 H 0 1 N N N -5.278 2.012 18.770 2.371 0.672 0.148 H5 S6J 31
S6J H6 H6 H 0 1 N N N -5.270 2.684 21.311 4.099 -0.424 -1.260 H6 S6J 32
S6J H7 H7 H 0 1 N N N -7.735 3.265 19.464 4.606 -0.399 1.832 H7 S6J 33
S6J H8 H8 H 0 1 N N N -8.329 2.141 21.724 4.269 -2.851 0.724 H8 S6J 34
S6J H9 H9 H 0 1 N N N -3.335 1.895 16.956 1.491 4.070 -1.454 H9 S6J 35
S6J H10 H10 H 0 1 N N N -1.792 1.339 16.224 0.932 2.556 -2.205 H10 S6J 36
S6J H11 H11 H 0 1 N N N -3.097 1.996 15.179 -0.101 4.005 -2.248 H11 S6J 37
S6J H12 H12 H 0 1 N N N -4.558 0.044 15.924 0.689 2.578 0.364 H12 S6J 38
S6J H13 H13 H 0 1 N N N -5.567 -1.870 21.294 -0.451 -2.736 0.764 H13 S6J 39
S6J H14 H14 H 0 1 N N N -7.713 -0.203 21.096 2.033 -1.774 -0.975 H14 S6J 40
S6J H15 H15 H 0 1 N N N -6.262 0.237 22.058 1.891 -3.086 0.236 H15 S6J 41
S6J H16 H16 H 0 1 N N N -7.608 4.716 21.472 6.498 -1.008 0.544 H16 S6J 42
S6J H17 H17 H 0 1 N N N -6.647 4.272 22.923 6.310 -2.037 -0.896 H17 S6J 43
S6J H18 H18 H 0 1 N N N -5.847 6.182 21.866 7.601 -0.082 -1.362 H18 S6J 44
S6J H19 H19 H 0 1 N N N -4.214 -0.415 13.316 -0.911 5.365 1.893 H19 S6J 45
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S6J O31 C4 SING N N 1
S6J C4 C6 SING N N 2
S6J C4 C2 SING N N 3
S6J C6 N7 SING N N 4
S6J C2 C1 SING N N 5
S6J C2 N7 SING N N 6
S6J N7 C8 SING N N 7
S6J C8 N13 DOUB Y N 8
S6J C8 C9 SING Y N 9
S6J N30 C29 TRIP N N 10
S6J C29 C9 SING N N 11
S6J N13 C12 SING Y N 12
S6J C9 C10 DOUB Y N 13
S6J C20 C18 SING N N 14
S6J C20 N14 SING N N 15
S6J C12 N14 SING N N 16
S6J C12 C11 DOUB Y N 17
S6J C18 C21 SING N N 18
S6J C18 C16 SING N N 19
S6J N14 C15 SING N N 20
S6J C10 C11 SING Y N 21
S6J C10 C25 SING N N 22
S6J F26 C25 SING N N 23
S6J C25 F28 SING N N 24
S6J C25 F27 SING N N 25
S6J C15 C16 SING N N 26
S6J C21 C16 SING N N 27
S6J C21 C23 SING N N 28
S6J O24 C23 SING N N 29
S6J C4 H1 SING N N 30
S6J C6 H2 SING N N 31
S6J C6 H3 SING N N 32
S6J C20 H4 SING N N 33
S6J C20 H5 SING N N 34
S6J C21 H6 SING N N 35
S6J C18 H7 SING N N 36
S6J C16 H8 SING N N 37
S6J C1 H9 SING N N 38
S6J C1 H10 SING N N 39
S6J C1 H11 SING N N 40
S6J C2 H12 SING N N 41
S6J C11 H13 SING N N 42
S6J C15 H14 SING N N 43
S6J C15 H15 SING N N 44
S6J C23 H16 SING N N 45
S6J C23 H17 SING N N 46
S6J O24 H18 SING N N 47
S6J O31 H19 SING N N 48
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S6J InChI InChI 1.03 "InChI=1S/C17H19F3N4O2/c1-8-14(26)6-24(8)16-9(3-21)13(17(18,19)20)2-15(22-16)23-4-10-11(5-23)12(10)7-25/h2,8,10-12,14,25-26H,4-7H2,1H3/t8-,10-,11+,12+,14+/m0/s1"
S6J InChIKey InChI 1.03 GRYXXSZANMHFDN-QTSITOFLSA-N
S6J SMILES_CANONICAL CACTVS 3.385 "C[C@H]1[C@H](O)CN1c2nc(cc(c2C#N)C(F)(F)F)N3C[C@@H]4C(CO)[C@@H]4C3"
S6J SMILES CACTVS 3.385 "C[CH]1[CH](O)CN1c2nc(cc(c2C#N)C(F)(F)F)N3C[CH]4C(CO)[CH]4C3"
S6J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@H](CN1c2c(c(cc(n2)N3C[C@@H]4[C@H](C3)C4CO)C(F)(F)F)C#N)O"
S6J SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(CN1c2c(c(cc(n2)N3CC4C(C3)C4CO)C(F)(F)F)C#N)O"
#
_pdbx_chem_comp_identifier.comp_id S6J
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "6-[(1~{S},5~{R})-6-(hydroxymethyl)-3-azabicyclo[3.1.0]hexan-3-yl]-2-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl)pyridine-3-carbonitrile"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S6J "Create component" 2020-03-04 RCSB
S6J "Initial release" 2020-09-23 RCSB
##