data_S6S
#
_chem_comp.id S6S
_chem_comp.name "2-[(1~{R},5~{S})-3-[5-cyano-6-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl)pyridin-2-yl]-3-azabicyclo[3.1.0]hexan-6-yl]ethanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H19 F3 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-04
_chem_comp.pdbx_modified_date 2020-09-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 396.364
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S6S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6W0Y
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S6S N3 N1 N 0 1 N N N -5.614 0.666 19.897 -1.006 1.150 -1.345 N3 S6S 1
S6S C4 C1 C 0 1 N N N -2.040 -1.517 15.706 1.759 -2.796 1.123 C4 S6S 2
S6S N2 N2 N 0 1 Y N N -3.963 -0.027 18.437 0.528 -0.526 -0.778 N2 S6S 3
S6S C7 C2 C 0 1 Y N N -3.578 -2.387 19.810 2.400 1.353 -0.029 C7 S6S 4
S6S C6 C3 C 0 1 Y N N -2.757 -2.139 18.692 2.684 -0.018 0.061 C6 S6S 5
S6S C9 C4 C 0 1 Y N N -4.718 -0.306 19.515 0.237 0.764 -0.871 C9 S6S 6
S6S C13 C5 C 0 1 N N N -5.692 1.944 19.189 -1.783 1.852 -0.292 C13 S6S 7
S6S C8 C6 C 0 1 Y N N -4.566 -1.499 20.231 1.162 1.738 -0.501 C8 S6S 8
S6S C18 C7 C 0 1 N N N -1.724 -3.045 18.277 3.955 -0.467 0.545 C18 S6S 9
S6S C16 C8 C 0 1 N N N -5.201 5.520 21.740 -6.121 0.429 1.016 C16 S6S 10
S6S C1 C9 C 0 1 N N N -2.350 1.775 16.104 0.932 -3.747 -2.026 C1 S6S 11
S6S C2 C10 C 0 1 N N S -2.969 0.408 15.873 0.785 -3.090 -0.652 C2 S6S 12
S6S C3 C11 C 0 1 N N R -2.454 -0.439 14.700 1.093 -4.039 0.515 C3 S6S 13
S6S N1 N3 N 0 1 N N N -2.411 -0.604 16.810 1.963 -2.299 -0.251 N1 S6S 14
S6S C5 C12 C 0 1 Y N N -3.038 -0.907 18.025 1.701 -0.943 -0.332 C5 S6S 15
S6S C10 C13 C 0 1 N N N -6.546 0.603 21.026 -1.838 -0.034 -1.684 C10 S6S 16
S6S C11 C14 C 0 1 N N S -6.984 2.046 21.260 -3.289 0.492 -1.663 C11 S6S 17
S6S C12 C15 C 0 1 N N R -6.554 2.845 20.068 -3.253 1.733 -0.747 C12 S6S 18
S6S C14 C16 C 0 1 N N N -5.932 3.114 21.408 -4.039 0.488 -0.329 C14 S6S 19
S6S C15 C17 C 0 1 N N N -6.197 4.446 22.119 -5.566 0.569 -0.378 C15 S6S 20
S6S O1 O1 O 0 1 N N N -4.619 5.551 20.659 -5.373 0.281 1.953 O1 S6S 21
S6S O2 O2 O 0 1 N N N -5.039 6.442 22.668 -7.448 0.470 1.217 O2 S6S 22
S6S C17 C18 C 0 1 N N N -3.398 -3.638 20.628 3.423 2.381 0.381 C17 S6S 23
S6S F1 F1 F 0 1 N N N -2.133 -3.945 20.810 2.895 3.663 0.196 F1 S6S 24
S6S F2 F2 F 0 1 N N N -3.894 -3.533 21.838 3.750 2.201 1.729 F2 S6S 25
S6S F3 F3 F 0 1 N N N -4.006 -4.680 20.093 4.572 2.233 -0.402 F3 S6S 26
S6S N4 N4 N 0 1 N N N -0.888 -3.722 17.900 4.963 -0.823 0.929 N4 S6S 27
S6S O3 O3 O 0 1 N N N -3.594 -0.833 13.939 -0.064 -4.489 1.224 O3 S6S 28
S6S H1 H1 H 0 1 N N N -2.643 -2.436 15.658 1.076 -2.181 1.710 H1 S6S 29
S6S H2 H2 H 0 1 N N N -0.972 -1.778 15.675 2.688 -3.014 1.649 H2 S6S 30
S6S H3 H3 H 0 1 N N N -4.688 2.376 19.064 -1.643 1.365 0.673 H3 S6S 31
S6S H4 H4 H 0 1 N N N -6.159 1.809 18.202 -1.487 2.900 -0.236 H4 S6S 32
S6S H5 H5 H 0 1 N N N -5.193 -1.724 21.081 0.912 2.785 -0.582 H5 S6S 33
S6S H6 H6 H 0 1 N N N -2.825 2.251 16.975 1.789 -4.420 -2.018 H6 S6S 34
S6S H7 H7 H 0 1 N N N -1.272 1.662 16.290 0.028 -4.312 -2.257 H7 S6S 35
S6S H8 H8 H 0 1 N N N -2.505 2.403 15.214 1.082 -2.977 -2.783 H8 S6S 36
S6S H9 H9 H 0 1 N N N -4.068 0.444 15.898 -0.157 -2.553 -0.540 H9 S6S 37
S6S H10 H10 H 0 1 N N N -1.620 0.012 14.141 1.788 -4.841 0.267 H10 S6S 38
S6S H11 H11 H 0 1 N N N -7.412 -0.028 20.777 -1.583 -0.407 -2.675 H11 S6S 39
S6S H12 H12 H 0 1 N N N -6.044 0.202 21.919 -1.707 -0.817 -0.937 H12 S6S 40
S6S H13 H13 H 0 1 N N N -7.982 2.225 21.687 -3.853 0.457 -2.595 H13 S6S 41
S6S H14 H14 H 0 1 N N N -7.233 3.578 19.608 -3.779 2.652 -1.005 H14 S6S 42
S6S H15 H15 H 0 1 N N N -4.906 2.736 21.525 -3.627 -0.119 0.477 H15 S6S 43
S6S H16 H16 H 0 1 N N N -7.206 4.792 21.852 -5.952 -0.235 -1.005 H16 S6S 44
S6S H17 H17 H 0 1 N N N -6.141 4.282 23.205 -5.866 1.531 -0.794 H17 S6S 45
S6S H18 H18 H 0 1 N N N -4.423 7.097 22.361 -7.757 0.376 2.129 H18 S6S 46
S6S H19 H19 H 0 1 N N N -3.821 -0.142 13.328 0.137 -5.003 2.018 H19 S6S 47
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S6S O3 C3 SING N N 1
S6S C3 C4 SING N N 2
S6S C3 C2 SING N N 3
S6S C4 N1 SING N N 4
S6S C2 C1 SING N N 5
S6S C2 N1 SING N N 6
S6S N1 C5 SING N N 7
S6S N4 C18 TRIP N N 8
S6S C5 N2 DOUB Y N 9
S6S C5 C6 SING Y N 10
S6S C18 C6 SING N N 11
S6S N2 C9 SING Y N 12
S6S C6 C7 DOUB Y N 13
S6S C13 N3 SING N N 14
S6S C13 C12 SING N N 15
S6S C9 N3 SING N N 16
S6S C9 C8 DOUB Y N 17
S6S C7 C8 SING Y N 18
S6S C7 C17 SING N N 19
S6S N3 C10 SING N N 20
S6S C12 C11 SING N N 21
S6S C12 C14 SING N N 22
S6S F3 C17 SING N N 23
S6S C17 F1 SING N N 24
S6S C17 F2 SING N N 25
S6S O1 C16 DOUB N N 26
S6S C10 C11 SING N N 27
S6S C11 C14 SING N N 28
S6S C14 C15 SING N N 29
S6S C16 C15 SING N N 30
S6S C16 O2 SING N N 31
S6S C4 H1 SING N N 32
S6S C4 H2 SING N N 33
S6S C13 H3 SING N N 34
S6S C13 H4 SING N N 35
S6S C8 H5 SING N N 36
S6S C1 H6 SING N N 37
S6S C1 H7 SING N N 38
S6S C1 H8 SING N N 39
S6S C2 H9 SING N N 40
S6S C3 H10 SING N N 41
S6S C10 H11 SING N N 42
S6S C10 H12 SING N N 43
S6S C11 H13 SING N N 44
S6S C12 H14 SING N N 45
S6S C14 H15 SING N N 46
S6S C15 H16 SING N N 47
S6S C15 H17 SING N N 48
S6S O2 H18 SING N N 49
S6S O3 H19 SING N N 50
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S6S InChI InChI 1.03 "InChI=1S/C18H19F3N4O3/c1-8-14(26)7-25(8)17-10(4-22)13(18(19,20)21)3-15(23-17)24-5-11-9(2-16(27)28)12(11)6-24/h3,8-9,11-12,14,26H,2,5-7H2,1H3,(H,27,28)/t8-,9-,11-,12+,14+/m0/s1"
S6S InChIKey InChI 1.03 BMYWDILFDVCFJX-GMEDAVPMSA-N
S6S SMILES_CANONICAL CACTVS 3.385 "C[C@H]1[C@H](O)CN1c2nc(cc(c2C#N)C(F)(F)F)N3C[C@H]4[C@@H](C3)C4CC(O)=O"
S6S SMILES CACTVS 3.385 "C[CH]1[CH](O)CN1c2nc(cc(c2C#N)C(F)(F)F)N3C[CH]4[CH](C3)C4CC(O)=O"
S6S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@H](CN1c2c(c(cc(n2)N3C[C@@H]4[C@H](C3)C4CC(=O)O)C(F)(F)F)C#N)O"
S6S SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(CN1c2c(c(cc(n2)N3CC4C(C3)C4CC(=O)O)C(F)(F)F)C#N)O"
#
_pdbx_chem_comp_identifier.comp_id S6S
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-[(1~{R},5~{S})-3-[5-cyano-6-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl)pyridin-2-yl]-3-azabicyclo[3.1.0]hexan-6-yl]ethanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S6S "Create component" 2020-03-04 RCSB
S6S "Initial release" 2020-09-23 RCSB
##