data_S6V # _chem_comp.id S6V _chem_comp.name "1-[2-(2-oxidanylidenepyrrolidin-1-yl)ethyl]-3-phenyl-urea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-04 _chem_comp.pdbx_modified_date 2020-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 247.293 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S6V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5R67 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S6V N1 N1 N 0 1 N N N 14.978 -9.807 -9.510 -2.311 0.822 0.660 N1 S6V 1 S6V N3 N2 N 0 1 N N N 13.778 -6.058 -11.899 3.697 0.117 0.438 N3 S6V 2 S6V C4 C1 C 0 1 Y N N 16.219 -10.503 -9.411 -3.547 0.304 0.257 C4 S6V 3 S6V C5 C2 C 0 1 Y N N 16.860 -11.028 -10.529 -4.630 1.153 0.071 C5 S6V 4 S6V C6 C3 C 0 1 Y N N 18.045 -11.733 -10.369 -5.848 0.639 -0.327 C6 S6V 5 S6V C7 C4 C 0 1 N N N 14.404 -9.224 -10.620 -1.168 0.255 0.225 C7 S6V 6 S6V C8 C5 C 0 1 N N N 12.386 -8.066 -11.415 1.261 0.067 0.224 C8 S6V 7 S6V C10 C6 C 0 1 N N N 14.266 -6.159 -13.243 4.334 -1.048 1.063 C10 S6V 8 S6V C13 C7 C 0 1 N N N 14.623 -5.464 -11.049 4.397 0.542 -0.628 C13 S6V 9 S6V C1 C8 C 0 1 Y N N 18.617 -11.884 -9.134 -5.990 -0.719 -0.541 C1 S6V 10 S6V C11 C9 C 0 1 N N N 15.528 -5.301 -13.260 5.323 -1.593 0.008 C11 S6V 11 S6V C12 C10 C 0 1 N N N 15.826 -4.991 -11.828 5.615 -0.330 -0.833 C12 S6V 12 S6V C2 C11 C 0 1 Y N N 18.001 -11.354 -8.025 -4.914 -1.568 -0.357 C2 S6V 13 S6V C3 C12 C 0 1 Y N N 16.797 -10.677 -8.158 -3.691 -1.059 0.036 C3 S6V 14 S6V C9 C13 C 0 1 N N N 12.461 -6.543 -11.535 2.455 0.733 0.911 C9 S6V 15 S6V N2 N3 N 0 1 N N N 13.220 -8.626 -10.362 0.019 0.683 0.697 N2 S6V 16 S6V O1 O1 O 0 1 N N N 14.886 -9.276 -11.772 -1.209 -0.644 -0.593 O1 S6V 17 S6V O2 O2 O 0 1 N N N 14.431 -5.317 -9.842 4.095 1.488 -1.325 O2 S6V 18 S6V H1 H1 H 0 1 N N N 14.454 -9.732 -8.661 -2.276 1.591 1.250 H1 S6V 19 S6V H2 H2 H 0 1 N N N 16.439 -10.888 -11.514 -4.519 2.214 0.238 H2 S6V 20 S6V H3 H3 H 0 1 N N N 18.524 -12.170 -11.233 -6.691 1.299 -0.472 H3 S6V 21 S6V H4 H4 H 0 1 N N N 11.341 -8.344 -11.212 1.344 0.198 -0.855 H4 S6V 22 S6V H5 H5 H 0 1 N N N 12.702 -8.503 -12.374 1.252 -0.997 0.461 H5 S6V 23 S6V H6 H6 H 0 1 N N N 13.523 -5.771 -13.956 4.870 -0.747 1.963 H6 S6V 24 S6V H7 H7 H 0 1 N N N 14.503 -7.204 -13.492 3.585 -1.803 1.305 H7 S6V 25 S6V H8 H8 H 0 1 N N N 19.550 -12.418 -9.031 -6.944 -1.119 -0.852 H8 S6V 26 S6V H9 H9 H 0 1 N N N 16.363 -5.855 -13.714 6.230 -1.968 0.481 H9 S6V 27 S6V H10 H10 H 0 1 N N N 15.354 -4.373 -13.825 4.855 -2.366 -0.602 H10 S6V 28 S6V H11 H11 H 0 1 N N N 16.730 -5.525 -11.500 5.726 -0.590 -1.885 H11 S6V 29 S6V H12 H12 H 0 1 N N N 15.970 -3.909 -11.692 6.511 0.172 -0.467 H12 S6V 30 S6V H13 H13 H 0 1 N N N 18.454 -11.465 -7.051 -5.029 -2.628 -0.525 H13 S6V 31 S6V H14 H14 H 0 1 N N N 16.305 -10.282 -7.282 -2.850 -1.722 0.175 H14 S6V 32 S6V H15 H15 H 0 1 N N N 12.183 -6.103 -10.566 2.373 0.602 1.990 H15 S6V 33 S6V H16 H16 H 0 1 N N N 11.745 -6.218 -12.304 2.464 1.797 0.673 H16 S6V 34 S6V H17 H17 H 0 1 N N N 12.906 -8.566 -9.414 0.052 1.400 1.349 H17 S6V 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S6V C11 C10 SING N N 1 S6V C11 C12 SING N N 2 S6V C10 N3 SING N N 3 S6V N3 C9 SING N N 4 S6V N3 C13 SING N N 5 S6V C12 C13 SING N N 6 S6V O1 C7 DOUB N N 7 S6V C9 C8 SING N N 8 S6V C8 N2 SING N N 9 S6V C13 O2 DOUB N N 10 S6V C7 N2 SING N N 11 S6V C7 N1 SING N N 12 S6V C5 C6 DOUB Y N 13 S6V C5 C4 SING Y N 14 S6V C6 C1 SING Y N 15 S6V N1 C4 SING N N 16 S6V C4 C3 DOUB Y N 17 S6V C1 C2 DOUB Y N 18 S6V C3 C2 SING Y N 19 S6V N1 H1 SING N N 20 S6V C5 H2 SING N N 21 S6V C6 H3 SING N N 22 S6V C8 H4 SING N N 23 S6V C8 H5 SING N N 24 S6V C10 H6 SING N N 25 S6V C10 H7 SING N N 26 S6V C1 H8 SING N N 27 S6V C11 H9 SING N N 28 S6V C11 H10 SING N N 29 S6V C12 H11 SING N N 30 S6V C12 H12 SING N N 31 S6V C2 H13 SING N N 32 S6V C3 H14 SING N N 33 S6V C9 H15 SING N N 34 S6V C9 H16 SING N N 35 S6V N2 H17 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S6V InChI InChI 1.03 "InChI=1S/C13H17N3O2/c17-12-7-4-9-16(12)10-8-14-13(18)15-11-5-2-1-3-6-11/h1-3,5-6H,4,7-10H2,(H2,14,15,18)" S6V InChIKey InChI 1.03 OYRHWZOYGOUXNC-UHFFFAOYSA-N S6V SMILES_CANONICAL CACTVS 3.385 "O=C(NCCN1CCCC1=O)Nc2ccccc2" S6V SMILES CACTVS 3.385 "O=C(NCCN1CCCC1=O)Nc2ccccc2" S6V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)NC(=O)NCCN2CCCC2=O" S6V SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)NC(=O)NCCN2CCCC2=O" # _pdbx_chem_comp_identifier.comp_id S6V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "1-[2-(2-oxidanylidenepyrrolidin-1-yl)ethyl]-3-phenyl-urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S6V "Create component" 2020-03-04 RCSB S6V "Initial release" 2020-04-15 RCSB ##