data_S6Y # _chem_comp.id S6Y _chem_comp.name "6-(2-methylpropyl)-2-oxidanylidene-5~{H}-pyrimidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H12 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-05 _chem_comp.pdbx_modified_date 2021-01-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 196.203 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S6Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6W0T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S6Y N1 N1 N 0 1 N N N 4.182 5.712 13.836 -0.855 0.909 -0.161 N1 S6Y 1 S6Y C2 C1 C 0 1 N N N 6.636 4.754 14.494 1.627 -0.198 -0.012 C2 S6Y 2 S6Y C3 C2 C 0 1 N N N 6.085 5.803 15.244 0.519 -0.997 -0.034 C3 S6Y 3 S6Y C4 C3 C 0 1 N N N 4.816 6.278 14.881 -0.750 -0.399 -0.110 C4 S6Y 4 S6Y C5 C4 C 0 1 N N N 4.055 7.403 15.562 -1.988 -1.258 -0.134 C5 S6Y 5 S6Y C7 C5 C 0 1 N N N 4.093 9.600 16.723 -4.476 -1.235 -0.369 C7 S6Y 6 S6Y C8 C6 C 0 1 N N N 4.853 7.554 17.924 -3.340 0.475 1.056 C8 S6Y 7 S6Y C9 C7 C 0 1 N N N 4.732 4.714 13.125 0.231 1.691 -0.141 C9 S6Y 8 S6Y O3 O1 O 0 1 N N N 4.093 4.240 12.165 0.100 2.902 -0.189 O3 S6Y 9 S6Y N2 N2 N 0 1 N N N 5.953 4.227 13.442 1.466 1.161 -0.067 N2 S6Y 10 S6Y C1 C8 C 0 1 N N N 7.986 4.193 14.811 2.983 -0.792 0.069 C1 S6Y 11 S6Y O2 O2 O 0 1 N N N 8.171 3.513 15.844 4.068 0.005 0.089 O2 S6Y 12 S6Y O1 O3 O 0 1 N N N 8.920 4.399 14.013 3.115 -1.998 0.116 O1 S6Y 13 S6Y C6 C9 C 0 1 N N N 4.799 8.256 16.576 -3.227 -0.363 -0.219 C6 S6Y 14 S6Y H1 H1 H 0 1 N N N 6.622 6.233 16.077 0.617 -2.072 0.007 H1 S6Y 15 S6Y H3 H3 H 0 1 N N N 3.691 8.077 14.772 -1.957 -1.918 -1.001 H3 S6Y 16 S6Y H4 H4 H 0 1 N N N 3.198 6.950 16.082 -2.034 -1.855 0.776 H4 S6Y 17 S6Y H5 H5 H 0 1 N N N 4.630 10.219 17.457 -4.563 -1.895 0.494 H5 S6Y 18 S6Y H6 H6 H 0 1 N N N 4.078 10.114 15.751 -5.358 -0.598 -0.430 H6 S6Y 19 S6Y H7 H7 H 0 1 N N N 3.061 9.436 17.067 -4.396 -1.832 -1.277 H7 S6Y 20 S6Y H8 H8 H 0 1 N N N 5.394 8.184 18.645 -2.450 1.095 1.162 H8 S6Y 21 S6Y H9 H9 H 0 1 N N N 3.830 7.378 18.287 -4.222 1.112 0.995 H9 S6Y 22 S6Y H10 H10 H 0 1 N N N 5.374 6.591 17.815 -3.427 -0.186 1.918 H10 S6Y 23 S6Y H11 H11 H 0 1 N N N 9.076 3.225 15.876 4.931 -0.429 0.142 H11 S6Y 24 S6Y H12 H12 H 0 1 N N N 5.825 8.427 16.218 -3.139 0.297 -1.082 H12 S6Y 25 S6Y H2 H2 H 0 1 N N N 6.352 3.483 12.906 2.243 1.742 -0.053 H2 S6Y 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S6Y O3 C9 DOUB N N 1 S6Y C9 N2 SING N N 2 S6Y C9 N1 SING N N 3 S6Y N2 C2 SING N N 4 S6Y N1 C4 DOUB N N 5 S6Y O1 C1 DOUB N N 6 S6Y C2 C1 SING N N 7 S6Y C2 C3 DOUB N N 8 S6Y C1 O2 SING N N 9 S6Y C4 C3 SING N N 10 S6Y C4 C5 SING N N 11 S6Y C5 C6 SING N N 12 S6Y C6 C7 SING N N 13 S6Y C6 C8 SING N N 14 S6Y C3 H1 SING N N 15 S6Y C5 H3 SING N N 16 S6Y C5 H4 SING N N 17 S6Y C7 H5 SING N N 18 S6Y C7 H6 SING N N 19 S6Y C7 H7 SING N N 20 S6Y C8 H8 SING N N 21 S6Y C8 H9 SING N N 22 S6Y C8 H10 SING N N 23 S6Y O2 H11 SING N N 24 S6Y C6 H12 SING N N 25 S6Y N2 H2 SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S6Y InChI InChI 1.03 "InChI=1S/C9H12N2O3/c1-5(2)3-6-4-7(8(12)13)11-9(14)10-6/h4-5H,3H2,1-2H3,(H,12,13)(H,10,11,14)" S6Y InChIKey InChI 1.03 WDIFSCKLWBVBLR-UHFFFAOYSA-N S6Y SMILES_CANONICAL CACTVS 3.385 "CC(C)CC1=NC(=O)NC(=C1)C(O)=O" S6Y SMILES CACTVS 3.385 "CC(C)CC1=NC(=O)NC(=C1)C(O)=O" S6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)CC1=NC(=O)NC(=C1)C(=O)O" S6Y SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC1=NC(=O)NC(=C1)C(=O)O" # _pdbx_chem_comp_identifier.comp_id S6Y _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(2-methylpropyl)-2-oxidanylidene-1~{H}-pyrimidine-6-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S6Y "Create component" 2020-03-05 RCSB S6Y "Initial release" 2021-01-13 RCSB ##