data_S78 # _chem_comp.id S78 _chem_comp.name "2-((1-benzyl-1H-indol-4-yl)oxy)-N-((1-(tert-butoxycarbonyl)piperidin-3-yl)methyl)ethan-1-aminium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H38 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(3~{R})-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-3-yl]methyl-[2-[1-(phenylmethyl)indol-4-yl]oxyethyl]azanium" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2020-11-10 _chem_comp.pdbx_modified_date 2021-09-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 464.620 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S78 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AWI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S78 C10 C1 C 0 1 N N N 23.640 40.984 43.245 -6.512 1.220 0.244 C10 S78 1 S78 C13 C2 C 0 1 N N N 21.184 42.814 40.891 -3.310 3.353 0.070 C13 S78 2 S78 C15 C3 C 0 1 N N N 20.426 42.523 38.437 -1.097 4.258 0.267 C15 S78 3 S78 C20 C4 C 0 1 Y N N 16.768 39.850 40.857 2.346 0.772 -1.807 C20 S78 4 S78 C21 C5 C 0 1 Y N N 15.735 39.442 41.693 3.375 -0.020 -2.144 C21 S78 5 S78 C24 C6 C 0 1 Y N N 13.427 40.705 43.566 5.738 -1.632 -0.417 C24 S78 6 S78 C26 C7 C 0 1 Y N N 13.934 40.621 45.923 6.167 -2.509 1.769 C26 S78 7 S78 C28 C8 C 0 1 Y N N 13.223 42.691 44.951 5.320 -3.943 0.049 C28 S78 8 S78 C01 C9 C 0 1 N N N 19.903 36.634 40.090 -3.717 -3.619 1.619 C01 S78 9 S78 C02 C10 C 0 1 N N N 21.386 37.106 40.225 -4.451 -3.709 0.279 C02 S78 10 S78 C03 C11 C 0 1 N N N 22.245 35.864 40.364 -3.465 -4.123 -0.815 C03 S78 11 S78 C04 C12 C 0 1 N N N 21.775 37.938 38.978 -5.569 -4.749 0.378 C04 S78 12 S78 C06 C13 C 0 1 N N N 20.974 39.131 41.418 -4.165 -1.383 -0.173 C06 S78 13 S78 C09 C14 C 0 1 N N N 22.697 39.742 43.170 -6.067 0.075 -0.671 C09 S78 14 S78 C11 C15 C 0 1 N N N 22.811 42.289 42.824 -5.638 2.448 -0.018 C11 S78 15 S78 C12 C16 C 0 1 N N R 22.497 42.230 41.299 -4.179 2.115 0.301 C12 S78 16 S78 C16 C17 C 0 1 N N N 18.900 42.609 38.019 0.339 3.962 0.704 C16 S78 17 S78 C18 C18 C 0 1 Y N N 16.866 41.748 39.063 2.172 2.566 0.118 C18 S78 18 S78 C19 C19 C 0 1 Y N N 16.292 40.937 40.064 2.783 1.579 -0.665 C19 S78 19 S78 C23 C20 C 0 1 N N N 13.340 40.064 42.213 5.728 -0.472 -1.380 C23 S78 20 S78 C25 C21 C 0 1 Y N N 13.837 39.986 44.679 6.163 -1.446 0.885 C25 S78 21 S78 C27 C22 C 0 1 Y N N 13.627 41.966 46.066 5.744 -3.757 1.351 C27 S78 22 S78 C29 C23 C 0 1 Y N N 13.131 42.065 43.711 5.317 -2.881 -0.835 C29 S78 23 S78 C30 C24 C 0 1 Y N N 14.920 41.171 40.467 4.105 1.188 -0.395 C30 S78 24 S78 C31 C25 C 0 1 Y N N 14.145 42.178 39.882 4.797 1.790 0.652 C31 S78 25 S78 C32 C26 C 0 1 Y N N 14.741 42.947 38.907 4.185 2.760 1.415 C32 S78 26 S78 C33 C27 C 0 1 Y N N 16.091 42.749 38.490 2.879 3.149 1.152 C33 S78 27 S78 C34 C28 C 0 1 N N N 22.426 40.833 40.981 -3.706 0.981 -0.615 C34 S78 28 S78 N08 N1 N 0 1 N N N 21.703 40.094 42.085 -4.629 -0.155 -0.475 N08 S78 29 S78 N14 N2 N 1 1 N N N 20.579 41.903 39.801 -1.931 3.069 0.489 N14 S78 30 S78 N22 N3 N 0 1 Y N N 14.593 40.235 41.461 4.435 0.211 -1.308 N22 S78 31 S78 O05 O1 O 0 1 N N N 21.470 37.887 41.420 -5.021 -2.415 -0.048 O05 S78 32 S78 O07 O2 O 0 1 N N N 20.000 39.508 40.789 -2.973 -1.560 -0.013 O07 S78 33 S78 O17 O3 O 0 1 N N N 18.198 41.518 38.652 0.894 2.949 -0.138 O17 S78 34 S78 H1 H1 H 0 1 N N N 24.487 40.847 42.557 -7.555 1.465 0.039 H1 S78 35 S78 H2 H2 H 0 1 N N N 24.016 41.101 44.272 -6.408 0.915 1.285 H2 S78 36 S78 H3 H3 H 0 1 N N N 21.334 43.828 40.491 -3.322 3.613 -0.989 H3 S78 37 S78 H4 H4 H 0 1 N N N 20.509 42.859 41.758 -3.703 4.187 0.652 H4 S78 38 S78 H5 H5 H 0 1 N N N 20.966 41.910 37.701 -1.490 5.091 0.850 H5 S78 39 S78 H6 H6 H 0 1 N N N 20.852 43.537 38.453 -1.109 4.517 -0.791 H6 S78 40 S78 H7 H7 H 0 1 N N N 17.758 39.420 40.815 1.380 0.810 -2.288 H7 S78 41 S78 H8 H8 H 0 1 N N N 15.798 38.639 42.412 3.369 -0.734 -2.955 H8 S78 42 S78 H9 H9 H 0 1 N N N 14.253 40.054 46.785 6.498 -2.364 2.787 H9 S78 43 S78 H10 H10 H 0 1 N N N 12.981 43.739 45.047 4.990 -4.918 -0.277 H10 S78 44 S78 H11 H11 H 0 1 N N N 19.624 36.043 40.975 -2.921 -2.879 1.548 H11 S78 45 S78 H12 H12 H 0 1 N N N 19.245 37.512 40.013 -4.420 -3.324 2.398 H12 S78 46 S78 H13 H13 H 0 1 N N N 19.796 36.015 39.187 -3.289 -4.591 1.865 H13 S78 47 S78 H14 H14 H 0 1 N N N 21.937 35.303 41.259 -3.037 -5.095 -0.570 H14 S78 48 S78 H15 H15 H 0 1 N N N 22.120 35.230 39.473 -3.987 -4.187 -1.770 H15 S78 49 S78 H16 H16 H 0 1 N N N 23.301 36.157 40.460 -2.668 -3.383 -0.886 H16 S78 50 S78 H17 H17 H 0 1 N N N 22.819 38.272 39.070 -6.271 -4.454 1.158 H17 S78 51 S78 H18 H18 H 0 1 N N N 21.667 37.318 38.076 -6.091 -4.813 -0.576 H18 S78 52 S78 H19 H19 H 0 1 N N N 21.115 38.815 38.902 -5.141 -5.721 0.624 H19 S78 53 S78 H20 H20 H 0 1 N N N 22.185 39.582 44.131 -6.619 -0.830 -0.420 H20 S78 54 S78 H21 H21 H 0 1 N N N 23.263 38.838 42.902 -6.258 0.343 -1.711 H21 S78 55 S78 H22 H22 H 0 1 N N N 23.406 43.188 43.042 -5.724 2.738 -1.065 H22 S78 56 S78 H23 H23 H 0 1 N N N 21.870 42.325 43.392 -5.969 3.272 0.615 H23 S78 57 S78 H24 H24 H 0 1 N N N 23.313 42.716 40.744 -4.096 1.802 1.341 H24 S78 58 S78 H25 H25 H 0 1 N N N 18.476 43.568 38.352 0.938 4.869 0.623 H25 S78 59 S78 H26 H26 H 0 1 N N N 18.808 42.527 36.926 0.341 3.617 1.738 H26 S78 60 S78 H27 H27 H 0 1 N N N 12.517 40.527 41.649 6.523 0.226 -1.115 H27 S78 61 S78 H28 H28 H 0 1 N N N 13.140 38.989 42.337 5.890 -0.840 -2.393 H28 S78 62 S78 H29 H29 H 0 1 N N N 14.081 38.938 44.586 6.493 -0.471 1.211 H29 S78 63 S78 H30 H30 H 0 1 N N N 13.701 42.444 47.032 5.746 -4.587 2.042 H30 S78 64 S78 H31 H31 H 0 1 N N N 12.826 42.638 42.848 4.984 -3.026 -1.852 H31 S78 65 S78 H32 H32 H 0 1 N N N 13.121 42.346 40.183 5.814 1.496 0.868 H32 S78 66 S78 H33 H33 H 0 1 N N N 14.164 43.731 38.440 4.727 3.222 2.227 H33 S78 67 S78 H34 H34 H 0 1 N N N 16.514 43.382 37.723 2.413 3.912 1.759 H34 S78 68 S78 H35 H35 H 0 1 N N N 21.881 40.701 40.035 -3.702 1.324 -1.649 H35 S78 69 S78 H36 H36 H 0 1 N N N 23.444 40.430 40.877 -2.701 0.673 -0.326 H36 S78 70 S78 H37 H37 H 0 1 N N N 19.673 41.615 40.110 -1.920 2.829 1.469 H37 S78 71 S78 H38 H38 H 0 1 N N N 21.170 41.101 39.709 -1.567 2.298 -0.051 H38 S78 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S78 C16 C15 SING N N 1 S78 C16 O17 SING N N 2 S78 C15 N14 SING N N 3 S78 C33 C32 DOUB Y N 4 S78 C33 C18 SING Y N 5 S78 O17 C18 SING N N 6 S78 C32 C31 SING Y N 7 S78 C04 C02 SING N N 8 S78 C18 C19 DOUB Y N 9 S78 N14 C13 SING N N 10 S78 C31 C30 DOUB Y N 11 S78 C19 C30 SING Y N 12 S78 C19 C20 SING Y N 13 S78 C01 C02 SING N N 14 S78 C02 C03 SING N N 15 S78 C02 O05 SING N N 16 S78 C30 N22 SING Y N 17 S78 O07 C06 DOUB N N 18 S78 C20 C21 DOUB Y N 19 S78 C13 C12 SING N N 20 S78 C34 C12 SING N N 21 S78 C34 N08 SING N N 22 S78 C12 C11 SING N N 23 S78 C06 O05 SING N N 24 S78 C06 N08 SING N N 25 S78 N22 C21 SING Y N 26 S78 N22 C23 SING N N 27 S78 N08 C09 SING N N 28 S78 C23 C24 SING N N 29 S78 C11 C10 SING N N 30 S78 C09 C10 SING N N 31 S78 C24 C29 DOUB Y N 32 S78 C24 C25 SING Y N 33 S78 C29 C28 SING Y N 34 S78 C25 C26 DOUB Y N 35 S78 C28 C27 DOUB Y N 36 S78 C26 C27 SING Y N 37 S78 C10 H1 SING N N 38 S78 C10 H2 SING N N 39 S78 C13 H3 SING N N 40 S78 C13 H4 SING N N 41 S78 C15 H5 SING N N 42 S78 C15 H6 SING N N 43 S78 C20 H7 SING N N 44 S78 C21 H8 SING N N 45 S78 C26 H9 SING N N 46 S78 C28 H10 SING N N 47 S78 C01 H11 SING N N 48 S78 C01 H12 SING N N 49 S78 C01 H13 SING N N 50 S78 C03 H14 SING N N 51 S78 C03 H15 SING N N 52 S78 C03 H16 SING N N 53 S78 C04 H17 SING N N 54 S78 C04 H18 SING N N 55 S78 C04 H19 SING N N 56 S78 C09 H20 SING N N 57 S78 C09 H21 SING N N 58 S78 C11 H22 SING N N 59 S78 C11 H23 SING N N 60 S78 C12 H24 SING N N 61 S78 C16 H25 SING N N 62 S78 C16 H26 SING N N 63 S78 C23 H27 SING N N 64 S78 C23 H28 SING N N 65 S78 C25 H29 SING N N 66 S78 C27 H30 SING N N 67 S78 C29 H31 SING N N 68 S78 C31 H32 SING N N 69 S78 C32 H33 SING N N 70 S78 C33 H34 SING N N 71 S78 C34 H35 SING N N 72 S78 C34 H36 SING N N 73 S78 N14 H37 SING N N 74 S78 N14 H38 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S78 InChI InChI 1.03 "InChI=1S/C28H37N3O3/c1-28(2,3)34-27(32)31-16-8-11-23(21-31)19-29-15-18-33-26-13-7-12-25-24(26)14-17-30(25)20-22-9-5-4-6-10-22/h4-7,9-10,12-14,17,23,29H,8,11,15-16,18-21H2,1-3H3/p+1/t23-/m1/s1" S78 InChIKey InChI 1.03 JFPVRNAGSDCRRM-HSZRJFAPSA-O S78 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N1CCC[C@H](C[NH2+]CCOc2cccc3n(Cc4ccccc4)ccc23)C1" S78 SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N1CCC[CH](C[NH2+]CCOc2cccc3n(Cc4ccccc4)ccc23)C1" S78 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N1CCC[C@@H](C1)C[NH2+]CCOc2cccc3c2ccn3Cc4ccccc4" S78 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N1CCCC(C1)C[NH2+]CCOc2cccc3c2ccn3Cc4ccccc4" # _pdbx_chem_comp_identifier.comp_id S78 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(3~{R})-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-3-yl]methyl-[2-[1-(phenylmethyl)indol-4-yl]oxyethyl]azanium" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S78 _pdbx_chem_comp_synonyms.name "[(3~{R})-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-3-yl]methyl-[2-[1-(phenylmethyl)indol-4-yl]oxyethyl]azanium" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S78 "Create component" 2020-11-10 PDBE S78 "Initial release" 2021-09-29 RCSB ##