data_S7H # _chem_comp.id S7H _chem_comp.name "1-[(2~{R})-2-oxidanylpropyl]-3-[[(2~{R})-oxiran-2-yl]methyl]-5-[[(2~{S})-oxiran-2-yl]methyl]-1,3,5-triazinane-2,4,6-trione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-10 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 299.280 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S7H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AQJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S7H N10 N1 N 0 1 N N N N N N 7.538 -1.547 23.732 1.357 0.036 0.521 N10 S7H 1 S7H C11 C1 C 0 1 N N N N N N 6.690 -2.100 24.923 2.789 0.014 0.826 C11 S7H 2 S7H C12 C2 C 0 1 N N R N N N 5.820 -1.006 25.505 3.562 -0.502 -0.389 C12 S7H 3 S7H C13 C3 C 0 1 N N N N N N 5.891 0.440 24.950 5.079 -0.656 -0.258 C13 S7H 4 S7H C18 C4 C 0 1 N N N N N N 11.180 -0.195 23.069 -1.549 -2.201 0.779 C18 S7H 5 S7H C19 C5 C 0 1 N N S N N N 11.370 0.823 24.219 -1.553 -3.125 -0.441 C19 S7H 6 S7H C20 C6 C 0 1 N N N N N N 10.875 2.270 23.941 -2.412 -4.389 -0.375 C20 S7H 7 S7H C02 C7 C 0 1 N N N N N N 9.120 -0.457 21.568 -1.277 0.073 -0.051 C02 S7H 8 S7H C04 C8 C 0 1 N N N N N N 7.150 -0.632 19.872 -1.120 2.352 -0.900 C04 S7H 9 S7H C05 C9 C 0 1 N N R N N N 7.045 -1.949 19.004 -1.610 3.280 0.213 C05 S7H 10 S7H C06 C10 C 0 1 N N N N N N 8.243 -2.907 19.257 -2.241 4.529 -0.404 C06 S7H 11 S7H C08 C11 C 0 1 N N N N N N 6.957 -1.361 22.394 0.801 1.137 -0.023 C08 S7H 12 S7H C15 C12 C 0 1 N N N N N N 8.916 -1.154 23.952 0.596 -1.046 0.779 C15 S7H 13 S7H N03 N2 N 0 1 N N N N N N 7.751 -0.817 21.308 -0.516 1.155 -0.309 N03 S7H 14 S7H N17 N3 N 0 1 N N N N N N 9.716 -0.617 22.864 -0.722 -1.025 0.498 N17 S7H 15 S7H O01 O1 O 0 1 N N N N N N 9.811 0.006 20.658 -2.464 0.089 -0.313 O01 S7H 16 S7H O07 O2 O 0 1 N N N N N N 5.851 -2.610 19.334 -2.582 2.598 1.008 O07 S7H 17 S7H O09 O3 O 0 1 N N N N N N 5.781 -1.671 22.176 1.487 2.113 -0.256 O09 S7H 18 S7H O14 O4 O 0 1 N N N N N N 6.565 0.079 26.200 4.480 0.392 -1.023 O14 S7H 19 S7H O16 O5 O 0 1 N N N N N N 9.416 -1.294 25.082 1.098 -2.040 1.265 O16 S7H 20 S7H O21 O6 O 0 1 N N N N N N 10.163 1.381 24.868 -2.773 -3.259 -1.171 O21 S7H 21 S7H H112 H1 H 0 0 N N N N N N 6.050 -2.919 24.563 3.125 1.023 1.069 H112 S7H 22 S7H H111 H2 H 0 0 N N N N N N 7.366 -2.479 25.704 2.970 -0.643 1.677 H111 S7H 23 S7H H121 H3 H 0 0 N N N N N N 4.856 -1.314 25.936 3.031 -1.215 -1.019 H121 S7H 24 S7H H131 H4 H 0 0 N N N N N N 6.481 0.657 24.047 5.535 -0.391 0.696 H131 S7H 25 S7H H132 H5 H 0 0 N N N N N N 4.999 1.084 24.969 5.555 -1.473 -0.800 H132 S7H 26 S7H H181 H6 H 0 0 N N N N N N 11.773 -1.093 23.296 -2.569 -1.885 0.998 H181 S7H 27 S7H H182 H7 H 0 0 N N N N N N 11.546 0.260 22.137 -1.142 -2.735 1.638 H182 S7H 28 S7H H191 H8 H 0 0 N N N N N N 12.283 0.722 24.824 -0.618 -3.174 -1.000 H191 S7H 29 S7H H202 H9 H 0 0 N N N N N N 11.440 3.132 24.324 -2.048 -5.278 -0.890 H202 S7H 30 S7H H201 H10 H 0 0 N N N N N N 10.431 2.526 22.968 -2.980 -4.570 0.538 H201 S7H 31 S7H H041 H11 H 0 0 N N N N N N 7.785 0.083 19.328 -1.963 2.061 -1.528 H041 S7H 32 S7H H042 H12 H 0 0 N N N N N N 6.138 -0.215 19.979 -0.379 2.872 -1.507 H042 S7H 33 S7H H051 H13 H 0 0 N N N N N N 7.047 -1.661 17.942 -0.767 3.570 0.841 H051 S7H 34 S7H H061 H14 H 0 0 N N N N N N 9.183 -2.396 19.001 -1.500 5.049 -1.010 H061 S7H 35 S7H H062 H15 H 0 0 N N N N N N 8.262 -3.198 20.318 -3.084 4.238 -1.031 H062 S7H 36 S7H H2 H16 H 0 1 N N N N N N 8.132 -3.805 18.632 -2.590 5.190 0.390 H2 S7H 37 S7H H1 H17 H 0 1 N N N N N N 5.633 -2.437 20.242 -2.937 3.127 1.736 H1 S7H 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S7H C05 C06 SING N N 1 S7H C05 O07 SING N N 2 S7H C05 C04 SING N N 3 S7H C04 N03 SING N N 4 S7H O01 C02 DOUB N N 5 S7H N03 C02 SING N N 6 S7H N03 C08 SING N N 7 S7H C02 N17 SING N N 8 S7H O09 C08 DOUB N N 9 S7H C08 N10 SING N N 10 S7H N17 C18 SING N N 11 S7H N17 C15 SING N N 12 S7H C18 C19 SING N N 13 S7H N10 C15 SING N N 14 S7H N10 C11 SING N N 15 S7H C20 C19 SING N N 16 S7H C20 O21 SING N N 17 S7H C15 O16 DOUB N N 18 S7H C19 O21 SING N N 19 S7H C11 C12 SING N N 20 S7H C13 C12 SING N N 21 S7H C13 O14 SING N N 22 S7H C12 O14 SING N N 23 S7H C11 H112 SING N N 24 S7H C11 H111 SING N N 25 S7H C12 H121 SING N N 26 S7H C13 H131 SING N N 27 S7H C13 H132 SING N N 28 S7H C18 H181 SING N N 29 S7H C18 H182 SING N N 30 S7H C19 H191 SING N N 31 S7H C20 H202 SING N N 32 S7H C20 H201 SING N N 33 S7H C04 H041 SING N N 34 S7H C04 H042 SING N N 35 S7H C05 H051 SING N N 36 S7H C06 H061 SING N N 37 S7H C06 H062 SING N N 38 S7H C06 H2 SING N N 39 S7H O07 H1 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S7H InChI InChI 1.03 "InChI=1S/C12H17N3O6/c1-7(16)2-13-10(17)14(3-8-5-20-8)12(19)15(11(13)18)4-9-6-21-9/h7-9,16H,2-6H2,1H3/t7-,8-,9+/m1/s1" S7H InChIKey InChI 1.03 MRWWCVUTOFNJLM-HLTSFMKQSA-N S7H SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)CN1C(=O)N(C[C@H]2CO2)C(=O)N(C[C@@H]3CO3)C1=O" S7H SMILES CACTVS 3.385 "C[CH](O)CN1C(=O)N(C[CH]2CO2)C(=O)N(C[CH]3CO3)C1=O" S7H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CN1C(=O)N(C(=O)N(C1=O)C[C@@H]2CO2)C[C@H]3CO3)O" S7H SMILES "OpenEye OEToolkits" 2.0.7 "CC(CN1C(=O)N(C(=O)N(C1=O)CC2CO2)CC3CO3)O" # _pdbx_chem_comp_identifier.comp_id S7H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(2~{R})-2-oxidanylpropyl]-3-[[(2~{R})-oxiran-2-yl]methyl]-5-[[(2~{S})-oxiran-2-yl]methyl]-1,3,5-triazinane-2,4,6-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S7H "Create component" 2020-11-10 PDBE S7H "Initial release" 2020-12-02 RCSB S7H "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id S7H _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C06 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #