data_S7L # _chem_comp.id S7L _chem_comp.name "1-(phenylmethyl)-4-[1-(phenylmethyl)pyridin-1-ium-4-yl]pyridin-1-ium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H22 N2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2023-04-11 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 338.445 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S7L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ISH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S7L C10 C1 C 0 1 Y N N N N N 16.046 -22.093 0.650 -1.460 1.238 -1.197 C10 S7L 1 S7L C13 C2 C 0 1 Y N N N N N 17.896 -21.952 4.311 2.843 1.247 1.147 C13 S7L 2 S7L C15 C3 C 0 1 Y N N N N N 19.705 -23.700 5.877 5.454 -0.168 -0.003 C15 S7L 3 S7L C17 C4 C 0 1 Y N N N N N 20.936 -23.048 5.816 5.685 -0.826 -1.197 C17 S7L 4 S7L C20 C5 C 0 1 Y N N N N N 13.808 -22.009 -4.471 -5.682 -0.824 1.198 C20 S7L 5 S7L C21 C6 C 0 1 Y N N N N N 22.072 -23.662 5.297 6.152 -2.127 -1.190 C21 S7L 6 S7L C22 C7 C 0 1 Y N N N N N 16.490 -22.462 -4.762 -6.164 -2.112 -1.200 C22 S7L 7 S7L C24 C8 C 0 1 Y N N N N N 14.403 -21.699 -5.681 -6.155 -2.124 1.194 C24 S7L 8 S7L C26 C9 C 0 1 Y N N N N N 15.757 -21.926 -5.813 -6.396 -2.767 -0.005 C26 S7L 9 S7L C03 C10 C 0 1 Y N N N N N 16.155 -22.714 2.963 0.744 1.242 -0.002 C03 S7L 10 S7L C04 C11 C 0 1 Y N N N N N 15.415 -22.711 1.661 -0.740 1.242 0.000 C04 S7L 11 S7L C05 C12 C 0 1 N N N N N N 18.421 -23.008 6.433 4.945 1.250 -0.010 C05 S7L 12 S7L C06 C13 C 0 1 N N N N N N 13.701 -22.848 -2.122 -4.942 1.249 0.008 C06 S7L 13 S7L C07 C14 C 0 1 Y N N N N N 15.888 -23.708 3.841 1.459 1.238 -1.203 C07 S7L 14 S7L C08 C15 C 0 1 Y N N N N N 14.288 -23.444 1.466 -1.456 1.247 1.201 C08 S7L 15 S7L C09 C16 C 0 1 Y N N N N N 17.182 -21.865 3.141 1.464 1.247 1.195 C09 S7L 16 S7L C11 C17 C 0 1 Y N N N N N 16.614 -23.790 5.009 2.839 1.234 -1.160 C11 S7L 17 S7L C12 C18 C 0 1 Y N N N N N 13.712 -23.465 0.212 -2.835 1.247 1.158 C12 S7L 18 S7L C14 C19 C 0 1 Y N N N N N 15.459 -22.123 -0.588 -2.840 1.244 -1.150 C14 S7L 19 S7L C16 C20 C 0 1 Y N N N N N 14.519 -22.540 -3.399 -5.451 -0.169 0.003 C16 S7L 20 S7L C18 C21 C 0 1 Y N N N N N 15.879 -22.782 -3.561 -5.686 -0.815 -1.196 C18 S7L 21 S7L C19 C22 C 0 1 Y N N N N N 19.657 -24.996 5.369 5.684 -0.814 1.197 C19 S7L 22 S7L C23 C23 C 0 1 Y N N N N N 20.787 -25.608 4.848 6.151 -2.115 1.204 C23 S7L 23 S7L C25 C24 C 0 1 Y N N N N N 21.998 -24.946 4.807 6.387 -2.771 0.010 C25 S7L 24 S7L N01 N1 N 1 1 Y N N N N N 17.599 -22.895 5.237 3.480 1.243 -0.008 N01 S7L 25 S7L N02 N2 N 1 1 Y N N N N N 14.315 -22.807 -0.803 -3.477 1.242 0.005 N02 S7L 26 S7L H1 H1 H 0 1 N N N N N N 16.987 -21.588 0.807 -0.945 1.234 -2.147 H1 S7L 27 S7L H2 H2 H 0 1 N N N N N N 18.704 -21.260 4.495 3.408 1.255 2.068 H2 S7L 28 S7L H3 H3 H 0 1 N N N N N N 21.010 -22.035 6.183 5.501 -0.323 -2.135 H3 S7L 29 S7L H4 H4 H 0 1 N N N N N N 12.749 -21.832 -4.354 -5.498 -0.320 2.135 H4 S7L 30 S7L H5 H5 H 0 1 N N N N N N 23.012 -23.131 5.279 6.332 -2.641 -2.123 H5 S7L 31 S7L H6 H6 H 0 1 N N N N N N 17.550 -22.631 -4.883 -6.348 -2.617 -2.137 H6 S7L 32 S7L H7 H7 H 0 1 N N N N N N 13.825 -21.292 -6.497 -6.335 -2.636 2.127 H7 S7L 33 S7L H8 H8 H 0 1 N N N N N N 16.252 -21.685 -6.742 -6.765 -3.782 -0.009 H8 S7L 34 S7L H9 H9 H 0 1 N N N N N N 18.651 -22.019 6.856 5.308 1.771 0.876 H9 S7L 35 S7L H10 H10 H 0 1 N N N N N N 17.931 -23.629 7.198 5.304 1.760 -0.904 H10 S7L 36 S7L H11 H11 H 0 1 N N N N N N 12.871 -22.126 -2.102 -5.305 1.769 -0.879 H11 S7L 37 S7L H12 H12 H 0 1 N N N N N N 13.299 -23.864 -2.247 -5.301 1.761 0.901 H12 S7L 38 S7L H13 H13 H 0 1 N N N N N N 15.113 -24.430 3.628 0.940 1.235 -2.150 H13 S7L 39 S7L H14 H14 H 0 1 N N N N N N 13.849 -24.002 2.280 -0.937 1.250 2.148 H14 S7L 40 S7L H15 H15 H 0 1 N N N N N N 17.438 -21.136 2.386 0.948 1.250 2.144 H15 S7L 41 S7L H16 H16 H 0 1 N N N N N N 16.398 -24.561 5.734 3.400 1.231 -2.082 H16 S7L 42 S7L H17 H17 H 0 1 N N N N N N 12.790 -24.001 0.044 -3.397 1.251 2.080 H17 S7L 43 S7L H18 H18 H 0 1 N N N N N N 15.920 -21.590 -1.406 -3.405 1.241 -2.070 H18 S7L 44 S7L H19 H19 H 0 1 N N N N N N 16.454 -23.216 -2.757 -5.505 -0.303 -2.130 H19 S7L 45 S7L H20 H20 H 0 1 N N N N N N 18.721 -25.535 5.381 5.499 -0.302 2.130 H20 S7L 46 S7L H21 H21 H 0 1 N N N N N N 20.719 -26.617 4.469 6.332 -2.619 2.142 H21 S7L 47 S7L H22 H22 H 0 1 N N N N N N 22.873 -25.428 4.397 6.752 -3.787 0.015 H22 S7L 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S7L C26 C24 DOUB Y N 1 S7L C26 C22 SING Y N 2 S7L C24 C20 SING Y N 3 S7L C22 C18 DOUB Y N 4 S7L C20 C16 DOUB Y N 5 S7L C18 C16 SING Y N 6 S7L C16 C06 SING N N 7 S7L C06 N02 SING N N 8 S7L N02 C14 DOUB Y N 9 S7L N02 C12 SING Y N 10 S7L C14 C10 SING Y N 11 S7L C12 C08 DOUB Y N 12 S7L C10 C04 DOUB Y N 13 S7L C08 C04 SING Y N 14 S7L C04 C03 SING N N 15 S7L C03 C09 DOUB Y N 16 S7L C03 C07 SING Y N 17 S7L C09 C13 SING Y N 18 S7L C07 C11 DOUB Y N 19 S7L C13 N01 DOUB Y N 20 S7L C25 C23 DOUB Y N 21 S7L C25 C21 SING Y N 22 S7L C23 C19 SING Y N 23 S7L C11 N01 SING Y N 24 S7L N01 C05 SING N N 25 S7L C21 C17 DOUB Y N 26 S7L C19 C15 DOUB Y N 27 S7L C17 C15 SING Y N 28 S7L C15 C05 SING N N 29 S7L C10 H1 SING N N 30 S7L C13 H2 SING N N 31 S7L C17 H3 SING N N 32 S7L C20 H4 SING N N 33 S7L C21 H5 SING N N 34 S7L C22 H6 SING N N 35 S7L C24 H7 SING N N 36 S7L C26 H8 SING N N 37 S7L C05 H9 SING N N 38 S7L C05 H10 SING N N 39 S7L C06 H11 SING N N 40 S7L C06 H12 SING N N 41 S7L C07 H13 SING N N 42 S7L C08 H14 SING N N 43 S7L C09 H15 SING N N 44 S7L C11 H16 SING N N 45 S7L C12 H17 SING N N 46 S7L C14 H18 SING N N 47 S7L C18 H19 SING N N 48 S7L C19 H20 SING N N 49 S7L C23 H21 SING N N 50 S7L C25 H22 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S7L InChI InChI 1.06 "InChI=1S/C24H22N2/c1-3-7-21(8-4-1)19-25-15-11-23(12-16-25)24-13-17-26(18-14-24)20-22-9-5-2-6-10-22/h1-18H,19-20H2/q+2" S7L InChIKey InChI 1.06 LUAZZOXZPVVGSO-UHFFFAOYSA-N S7L SMILES_CANONICAL CACTVS 3.385 "C(c1ccccc1)[n+]2ccc(cc2)c3cc[n+](Cc4ccccc4)cc3" S7L SMILES CACTVS 3.385 "C(c1ccccc1)[n+]2ccc(cc2)c3cc[n+](Cc4ccccc4)cc3" S7L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[n+]2ccc(cc2)c3cc[n+](cc3)Cc4ccccc4" S7L SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[n+]2ccc(cc2)c3cc[n+](cc3)Cc4ccccc4" # _pdbx_chem_comp_identifier.comp_id S7L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-(phenylmethyl)-4-[1-(phenylmethyl)pyridin-1-ium-4-yl]pyridin-1-ium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S7L "Create component" 2023-04-11 PDBJ S7L "Initial release" 2024-04-17 RCSB #