data_S7N # _chem_comp.id S7N _chem_comp.name "(phenylmethyl) ~{N}-[(2~{R})-3-methyl-1-[[(2~{S})-1-[[(3~{S})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H33 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Z-VAM-FMK;zVAM.fmk" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-10 _chem_comp.pdbx_modified_date 2021-07-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.580 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S7N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ARA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S7N C10 C1 C 0 1 N N N -31.323 43.826 5.012 2.317 -1.589 2.009 C10 S7N 1 S7N C20 C2 C 0 1 Y N N -25.139 39.271 0.390 -7.195 1.003 -0.538 C20 S7N 2 S7N C21 C3 C 0 1 Y N N -25.371 38.279 -0.591 -8.150 0.442 0.289 C21 S7N 3 S7N C22 C4 C 0 1 Y N N -24.984 36.960 -0.353 -9.170 1.224 0.798 C22 S7N 4 S7N C24 C5 C 0 1 Y N N -24.148 37.611 1.817 -8.279 3.129 -0.346 C24 S7N 5 S7N C26 C6 C 0 1 N N N -28.278 44.724 0.764 -1.792 -2.806 0.316 C26 S7N 6 S7N C28 C7 C 0 1 N N N -27.782 45.602 1.914 -2.971 -3.430 -0.433 C28 S7N 7 S7N C01 C8 C 0 1 N N N -36.732 48.010 2.592 6.383 4.926 0.131 C01 S7N 8 S7N C03 C9 C 0 1 N N N -36.129 45.178 2.894 6.021 2.133 -0.228 C03 S7N 9 S7N C04 C10 C 0 1 N N N -35.789 43.870 2.131 6.609 0.724 -0.119 C04 S7N 10 S7N C05 C11 C 0 1 N N S -35.302 42.826 3.147 5.573 -0.298 -0.591 C05 S7N 11 S7N C07 C12 C 0 1 N N N -32.747 43.568 2.883 3.214 -0.686 -0.119 C07 S7N 12 S7N C09 C13 C 0 1 N N S -31.373 43.279 3.585 2.033 -0.673 0.817 C09 S7N 13 S7N C12 C14 C 0 1 N N N -29.560 42.842 1.987 -0.384 -0.775 0.522 C12 S7N 14 S7N C14 C15 C 0 1 N N R -28.327 43.262 1.145 -1.610 -1.356 -0.134 C14 S7N 15 S7N C16 C16 C 0 1 N N N -25.792 42.819 1.314 -3.873 -0.550 -0.545 C16 S7N 16 S7N C19 C17 C 0 1 N N N -25.564 40.722 0.136 -6.087 0.148 -1.098 C19 S7N 17 S7N C23 C18 C 0 1 Y N N -24.375 36.619 0.839 -9.234 2.568 0.480 C23 S7N 18 S7N C25 C19 C 0 1 Y N N -24.531 38.932 1.583 -7.260 2.346 -0.856 C25 S7N 19 S7N C27 C20 C 0 1 N N N -29.576 45.243 0.107 -2.068 -2.843 1.821 C27 S7N 20 S7N C29 C21 C 0 1 N N N -35.446 41.371 2.730 6.191 -1.672 -0.601 C29 S7N 21 S7N C30 C22 C 0 1 N N N -34.661 40.411 3.639 7.163 -2.054 -1.688 C30 S7N 22 S7N N06 N1 N 0 1 N N N -33.897 42.865 3.499 4.424 -0.285 0.318 N06 S7N 23 S7N N11 N2 N 0 1 N N N -30.245 43.766 2.820 0.843 -1.150 0.108 N11 S7N 24 S7N N15 N3 N 0 1 N N N -27.138 42.936 1.943 -2.787 -0.573 0.253 N15 S7N 25 S7N O08 O1 O 0 1 N N N -32.829 44.331 1.920 3.076 -1.057 -1.265 O08 S7N 26 S7N O13 O2 O 0 1 N N N -29.940 41.695 1.949 -0.501 0.028 1.423 O13 S7N 27 S7N O17 O3 O 0 1 N N N -25.235 43.816 0.845 -3.876 -1.177 -1.586 O17 S7N 28 S7N O18 O4 O 0 1 N N N -25.146 41.531 1.260 -4.954 0.169 -0.190 O18 S7N 29 S7N O31 O5 O 0 1 N N N -36.088 41.002 1.774 5.908 -2.467 0.263 O31 S7N 30 S7N S02 S1 S 0 1 N N N -36.691 46.417 1.761 7.249 3.345 0.331 S02 S7N 31 S7N H1 H1 H 0 1 N N N -32.185 43.448 5.581 2.488 -2.605 1.655 H1 S7N 32 S7N H2 H2 H 0 1 N N N -30.392 43.499 5.498 3.202 -1.234 2.537 H2 S7N 33 S7N H3 H3 H 0 1 N N N -31.356 44.925 4.985 1.462 -1.579 2.686 H3 S7N 34 S7N H4 H4 H 0 1 N N N -25.847 38.542 -1.524 -8.100 -0.608 0.538 H4 S7N 35 S7N H5 H5 H 0 1 N N N -25.161 36.203 -1.103 -9.916 0.785 1.444 H5 S7N 36 S7N H6 H6 H 0 1 N N N -23.675 37.346 2.751 -8.329 4.179 -0.595 H6 S7N 37 S7N H7 H7 H 0 1 N N N -27.507 44.801 -0.017 -0.884 -3.370 0.100 H7 S7N 38 S7N H8 H8 H 0 1 N N N -26.859 45.173 2.331 -2.774 -3.404 -1.505 H8 S7N 39 S7N H9 H9 H 0 1 N N N -27.579 46.616 1.540 -3.100 -4.463 -0.113 H9 S7N 40 S7N H10 H10 H 0 1 N N N -28.552 45.648 2.698 -3.878 -2.866 -0.217 H10 S7N 41 S7N H11 H11 H 0 1 N N N -37.081 48.782 1.890 7.037 5.741 0.442 H11 S7N 42 S7N H12 H12 H 0 1 N N N -37.418 47.958 3.450 6.109 5.060 -0.916 H12 S7N 43 S7N H13 H13 H 0 1 N N N -35.722 48.265 2.945 5.483 4.927 0.745 H13 S7N 44 S7N H14 H14 H 0 1 N N N -35.229 45.541 3.412 5.756 2.337 -1.266 H14 S7N 45 S7N H15 H15 H 0 1 N N N -36.920 44.974 3.631 5.130 2.204 0.395 H15 S7N 46 S7N H16 H16 H 0 1 N N N -36.687 43.497 1.616 7.500 0.653 -0.743 H16 S7N 47 S7N H17 H17 H 0 1 N N N -34.998 44.066 1.392 6.873 0.521 0.918 H17 S7N 48 S7N H18 H18 H 0 1 N N N -35.892 42.965 4.065 5.242 -0.042 -1.598 H18 S7N 49 S7N H19 H19 H 0 1 N N N -31.285 42.185 3.658 1.861 0.343 1.171 H19 S7N 50 S7N H20 H20 H 0 1 N N N -28.320 42.659 0.225 -1.493 -1.323 -1.217 H20 S7N 51 S7N H21 H21 H 0 1 N N N -25.087 41.092 -0.784 -6.442 -0.876 -1.213 H21 S7N 52 S7N H22 H22 H 0 1 N N N -26.658 40.774 0.029 -5.782 0.539 -2.068 H22 S7N 53 S7N H23 H23 H 0 1 N N N -24.074 35.598 1.022 -10.031 3.179 0.877 H23 S7N 54 S7N H24 H24 H 0 1 N N N -24.352 39.688 2.333 -6.514 2.785 -1.502 H24 S7N 55 S7N H25 H25 H 0 1 N N N -29.462 46.309 -0.140 -2.119 -3.879 2.156 H25 S7N 56 S7N H26 H26 H 0 1 N N N -29.775 44.673 -0.813 -1.265 -2.329 2.350 H26 S7N 57 S7N H27 H27 H 0 1 N N N -30.416 45.116 0.805 -3.015 -2.346 2.029 H27 S7N 58 S7N H28 H28 H 0 1 N N N -34.785 39.379 3.278 7.293 -1.214 -2.370 H28 S7N 59 S7N H29 H29 H 0 1 N N N -33.594 40.680 3.622 8.124 -2.312 -1.242 H29 S7N 60 S7N H30 H30 H 0 1 N N N -35.042 40.487 4.668 6.775 -2.912 -2.237 H30 S7N 61 S7N H31 H31 H 0 1 N N N -33.661 42.319 4.303 4.535 0.011 1.235 H31 S7N 62 S7N H32 H32 H 0 1 N N N -29.957 44.722 2.876 0.938 -1.735 -0.660 H32 S7N 63 S7N H33 H33 H 0 1 N N N -27.233 42.790 2.928 -2.785 -0.073 1.084 H33 S7N 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S7N C21 C22 DOUB Y N 1 S7N C21 C20 SING Y N 2 S7N C22 C23 SING Y N 3 S7N C27 C26 SING N N 4 S7N C19 C20 SING N N 5 S7N C19 O18 SING N N 6 S7N C20 C25 DOUB Y N 7 S7N C26 C14 SING N N 8 S7N C26 C28 SING N N 9 S7N C23 C24 DOUB Y N 10 S7N O17 C16 DOUB N N 11 S7N C14 N15 SING N N 12 S7N C14 C12 SING N N 13 S7N O18 C16 SING N N 14 S7N C16 N15 SING N N 15 S7N C25 C24 SING Y N 16 S7N S02 C01 SING N N 17 S7N S02 C03 SING N N 18 S7N O31 C29 DOUB N N 19 S7N O08 C07 DOUB N N 20 S7N O13 C12 DOUB N N 21 S7N C12 N11 SING N N 22 S7N C04 C03 SING N N 23 S7N C04 C05 SING N N 24 S7N C29 C05 SING N N 25 S7N C29 C30 SING N N 26 S7N N11 C09 SING N N 27 S7N C07 N06 SING N N 28 S7N C07 C09 SING N N 29 S7N C05 N06 SING N N 30 S7N C09 C10 SING N N 31 S7N C10 H1 SING N N 32 S7N C10 H2 SING N N 33 S7N C10 H3 SING N N 34 S7N C21 H4 SING N N 35 S7N C22 H5 SING N N 36 S7N C24 H6 SING N N 37 S7N C26 H7 SING N N 38 S7N C28 H8 SING N N 39 S7N C28 H9 SING N N 40 S7N C28 H10 SING N N 41 S7N C01 H11 SING N N 42 S7N C01 H12 SING N N 43 S7N C01 H13 SING N N 44 S7N C03 H14 SING N N 45 S7N C03 H15 SING N N 46 S7N C04 H16 SING N N 47 S7N C04 H17 SING N N 48 S7N C05 H18 SING N N 49 S7N C09 H19 SING N N 50 S7N C14 H20 SING N N 51 S7N C19 H21 SING N N 52 S7N C19 H22 SING N N 53 S7N C23 H23 SING N N 54 S7N C25 H24 SING N N 55 S7N C27 H25 SING N N 56 S7N C27 H26 SING N N 57 S7N C27 H27 SING N N 58 S7N C30 H28 SING N N 59 S7N C30 H29 SING N N 60 S7N C30 H30 SING N N 61 S7N N06 H31 SING N N 62 S7N N11 H32 SING N N 63 S7N N15 H33 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S7N InChI InChI 1.03 "InChI=1S/C22H33N3O5S/c1-14(2)19(25-22(29)30-13-17-9-7-6-8-10-17)21(28)23-15(3)20(27)24-18(16(4)26)11-12-31-5/h6-10,14-15,18-19H,11-13H2,1-5H3,(H,23,28)(H,24,27)(H,25,29)/t15-,18-,19+/m0/s1" S7N InChIKey InChI 1.03 XQQSDBOJVLTWFC-ZYSHUDEJSA-N S7N SMILES_CANONICAL CACTVS 3.385 "CSCC[C@H](NC(=O)[C@H](C)NC(=O)[C@H](NC(=O)OCc1ccccc1)C(C)C)C(C)=O" S7N SMILES CACTVS 3.385 "CSCC[CH](NC(=O)[CH](C)NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(C)=O" S7N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)N[C@@H](CCSC)C(=O)C)NC(=O)[C@@H](C(C)C)NC(=O)OCc1ccccc1" S7N SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(C)C(=O)NC(CCSC)C(=O)C)NC(=O)OCc1ccccc1" # _pdbx_chem_comp_identifier.comp_id S7N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(phenylmethyl) ~{N}-[(2~{R})-3-methyl-1-[[(2~{S})-1-[[(3~{S})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 S7N Z-VAM-FMK ? ? 2 S7N zVAM.fmk ? ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S7N "Create component" 2020-11-10 PDBE S7N "Initial release" 2021-07-28 RCSB ##