data_S7Q # _chem_comp.id S7Q _chem_comp.name "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{R})-1-[[(3~{R})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H33 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms zVAM.fmk _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-10 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.580 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S7Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ARA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S7Q C10 C1 C 0 1 N N N N N N -51.271 6.816 -12.924 -2.186 -1.263 2.132 C10 S7Q 1 S7Q C20 C2 C 0 1 Y N N N N N -41.668 5.626 -13.345 7.302 0.933 -0.434 C20 S7Q 2 S7Q C21 C3 C 0 1 Y N N N N N -40.428 5.732 -12.675 8.217 0.212 0.310 C21 S7Q 3 S7Q C22 C4 C 0 1 Y N N N N N -39.275 6.020 -13.404 9.272 0.859 0.925 C22 S7Q 4 S7Q C24 C5 C 0 1 Y N N N N N -40.595 6.093 -15.440 8.500 2.949 0.050 C24 S7Q 5 S7Q C26 C6 C 0 1 N N N N N N -48.073 4.204 -15.225 1.689 -2.648 -0.099 C26 S7Q 6 S7Q C28 C7 C 0 1 N N N N N N -48.808 4.819 -16.413 1.843 -2.911 1.401 C28 S7Q 7 S7Q C01 C8 C 0 1 N N N N N N -48.259 7.924 -9.907 -6.566 4.839 -0.333 C01 S7Q 8 S7Q C03 C9 C 0 1 N N N N N N -49.655 10.305 -10.753 -6.134 2.033 -0.344 C03 S7Q 9 S7Q C04 C10 C 0 1 N N N N N N -51.077 10.109 -11.331 -6.667 0.637 -0.015 C04 S7Q 10 S7Q C05 C11 C 0 1 N N R N N N -51.210 10.932 -12.615 -5.627 -0.413 -0.411 C05 S7Q 11 S7Q C07 C12 C 0 1 N N N N N N -50.700 8.866 -14.307 -3.234 -0.675 -0.037 C07 S7Q 12 S7Q C09 C13 C 0 1 N N R N N N -50.134 7.738 -13.375 -2.001 -0.508 0.814 C09 S7Q 13 S7Q C12 C14 C 0 1 N N N N N N -48.343 5.985 -13.536 0.396 -0.588 0.388 C12 S7Q 14 S7Q C14 C15 C 0 1 N N S N N N -47.322 5.221 -14.406 1.592 -1.141 -0.345 C14 S7Q 15 S7Q C16 C16 C 0 1 N N N N N N -44.874 4.554 -13.815 3.898 -0.414 -0.647 C16 S7Q 16 S7Q C19 C17 C 0 1 N N N N N N -42.946 5.308 -12.573 6.151 0.227 -1.103 C19 S7Q 17 S7Q C23 C18 C 0 1 Y N N N N N -39.354 6.197 -14.774 9.413 2.228 0.794 C23 S7Q 18 S7Q C25 C19 C 0 1 Y N N N N N -41.747 5.804 -14.712 7.441 2.303 -0.560 C25 S7Q 19 S7Q C27 C20 C 0 1 N N N N N N -47.156 3.050 -15.651 2.903 -3.208 -0.842 C27 S7Q 20 S7Q C29 C21 C 0 1 N N N N N N -52.495 11.762 -12.567 -6.199 -1.791 -0.201 C29 S7Q 21 S7Q C30 C22 C 0 1 N N N N N N -52.485 13.128 -13.268 -7.132 -2.384 -1.226 C30 S7Q 22 S7Q N06 N1 N 0 1 N N N N N N -51.161 10.229 -13.896 -4.429 -0.250 0.417 N06 S7Q 23 S7Q N11 N2 N 0 1 N N N N N N -49.146 6.997 -14.130 -0.839 -1.045 0.102 N11 S7Q 24 S7Q N15 N3 N 0 1 N N N N N N -46.345 4.545 -13.537 2.809 -0.486 0.143 N15 S7Q 25 S7Q O08 O1 O 0 1 N N N N N N -50.788 8.585 -15.500 -3.149 -1.192 -1.131 O08 S7Q 26 S7Q O13 O2 O 0 1 N N N N N N -48.454 5.699 -12.365 0.546 0.268 1.234 O13 S7Q 27 S7Q O17 O3 O 0 1 N N N N N N -44.344 3.586 -14.368 3.871 -0.892 -1.764 O17 S7Q 28 S7Q O18 O4 O 0 1 N N N N N N -44.054 5.674 -13.429 5.016 0.187 -0.198 O18 S7Q 29 S7Q O31 O5 O 0 1 N N N N N N -53.487 11.363 -12.001 -5.910 -2.421 0.788 O31 S7Q 30 S7Q S02 S1 S 0 1 N N N N N N -49.447 9.170 -9.415 -7.367 3.277 0.126 S02 S7Q 31 S7Q H1 H1 H 0 1 N N N N N N -50.868 6.028 -12.271 -2.344 -2.322 1.925 H1 S7Q 32 S7Q H2 H2 H 0 1 N N N N N N -52.020 7.402 -12.371 -1.295 -1.143 2.748 H2 S7Q 33 S7Q H3 H3 H 0 1 N N N N N N -51.742 6.356 -13.806 -3.051 -0.864 2.662 H3 S7Q 34 S7Q H4 H4 H 0 1 N N N N N N -40.374 5.591 -11.606 8.106 -0.858 0.413 H4 S7Q 35 S7Q H5 H5 H 0 1 N N N N N N -38.323 6.105 -12.901 9.986 0.295 1.507 H5 S7Q 36 S7Q H6 H6 H 0 1 N N N N N N -40.651 6.237 -16.509 8.610 4.019 -0.052 H6 S7Q 37 S7Q H7 H7 H 0 1 N N N N N N -48.841 3.769 -14.569 0.784 -3.134 -0.462 H7 S7Q 38 S7Q H8 H8 H 0 1 N N N N N N -49.451 5.639 -16.062 0.979 -2.511 1.930 H8 S7Q 39 S7Q H9 H9 H 0 1 N N N N N N -48.076 5.211 -17.134 1.913 -3.984 1.576 H9 S7Q 40 S7Q H10 H10 H 0 1 N N N N N N -49.427 4.050 -16.899 2.749 -2.424 1.764 H10 S7Q 41 S7Q H11 H11 H 0 1 N N N N N N -48.117 7.207 -9.085 -7.227 5.671 -0.092 H11 S7Q 42 S7Q H12 H12 H 0 1 N N N N N N -48.631 7.393 -10.796 -5.633 4.945 0.219 H12 S7Q 43 S7Q H13 H13 H 0 1 N N N N N N -47.299 8.406 -10.143 -6.357 4.839 -1.403 H13 S7Q 44 S7Q H14 H14 H 0 1 N N N N N N -48.905 10.105 -11.532 -5.211 2.209 0.209 H14 S7Q 45 S7Q H15 H15 H 0 1 N N N N N N -49.539 11.336 -10.389 -5.936 2.103 -1.413 H15 S7Q 46 S7Q H16 H16 H 0 1 N N N N N N -51.823 10.447 -10.597 -6.865 0.566 1.055 H16 S7Q 47 S7Q H17 H17 H 0 1 N N N N N N -51.240 9.045 -11.556 -7.590 0.461 -0.567 H17 S7Q 48 S7Q H18 H18 H 0 1 N N N N N N -50.377 11.651 -12.609 -5.363 -0.285 -1.461 H18 S7Q 49 S7Q H19 H19 H 0 1 N N N N N N -49.673 8.205 -12.492 -1.844 0.550 1.021 H19 S7Q 50 S7Q H20 H20 H 0 1 N N N N N N -46.811 5.931 -15.073 1.482 -0.953 -1.413 H20 S7Q 51 S7Q H21 H21 H 0 1 N N N N N N -42.980 5.890 -11.640 5.873 0.764 -2.010 H21 S7Q 52 S7Q H22 H22 H 0 1 N N N N N N -42.989 4.234 -12.337 6.448 -0.790 -1.360 H22 S7Q 53 S7Q H23 H23 H 0 1 N N N N N N -38.460 6.416 -15.338 10.241 2.733 1.271 H23 S7Q 54 S7Q H24 H24 H 0 1 N N N N N N -42.699 5.719 -15.215 6.726 2.866 -1.142 H24 S7Q 55 S7Q H25 H25 H 0 1 N N N N N N -46.648 2.638 -14.766 2.972 -4.282 -0.667 H25 S7Q 56 S7Q H26 H26 H 0 1 N N N N N N -47.756 2.262 -16.129 2.793 -3.021 -1.910 H26 S7Q 57 S7Q H27 H27 H 0 1 N N N N N N -46.406 3.422 -16.364 3.808 -2.722 -0.479 H27 S7Q 58 S7Q H28 H28 H 0 1 N N N N N N -53.469 13.607 -13.153 -7.274 -1.674 -2.041 H28 S7Q 59 S7Q H29 H29 H 0 1 N N N N N N -51.712 13.766 -12.816 -6.704 -3.306 -1.617 H29 S7Q 60 S7Q H30 H30 H 0 1 N N N N N N -52.267 12.990 -14.337 -8.094 -2.599 -0.760 H30 S7Q 61 S7Q H31 H31 H 0 1 N N N N N N -51.509 10.774 -14.659 -4.497 0.163 1.292 H31 S7Q 62 S7Q H32 H32 H 0 1 N N N N N N -49.024 7.204 -15.101 -0.959 -1.730 -0.575 H32 S7Q 63 S7Q H33 H33 H 0 1 N N N N N N -46.677 4.060 -12.728 2.830 -0.105 1.035 H33 S7Q 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S7Q C28 C26 SING N N 1 S7Q C27 C26 SING N N 2 S7Q O08 C07 DOUB N N 3 S7Q C24 C23 DOUB Y N 4 S7Q C24 C25 SING Y N 5 S7Q C26 C14 SING N N 6 S7Q C23 C22 SING Y N 7 S7Q C25 C20 DOUB Y N 8 S7Q C14 N15 SING N N 9 S7Q C14 C12 SING N N 10 S7Q O17 C16 DOUB N N 11 S7Q C07 N06 SING N N 12 S7Q C07 C09 SING N N 13 S7Q N11 C12 SING N N 14 S7Q N11 C09 SING N N 15 S7Q N06 C05 SING N N 16 S7Q C16 N15 SING N N 17 S7Q C16 O18 SING N N 18 S7Q C12 O13 DOUB N N 19 S7Q O18 C19 SING N N 20 S7Q C22 C21 DOUB Y N 21 S7Q C09 C10 SING N N 22 S7Q C20 C21 SING Y N 23 S7Q C20 C19 SING N N 24 S7Q C30 C29 SING N N 25 S7Q C05 C29 SING N N 26 S7Q C05 C04 SING N N 27 S7Q C29 O31 DOUB N N 28 S7Q C04 C03 SING N N 29 S7Q C03 S02 SING N N 30 S7Q C01 S02 SING N N 31 S7Q C10 H1 SING N N 32 S7Q C10 H2 SING N N 33 S7Q C10 H3 SING N N 34 S7Q C21 H4 SING N N 35 S7Q C22 H5 SING N N 36 S7Q C24 H6 SING N N 37 S7Q C26 H7 SING N N 38 S7Q C28 H8 SING N N 39 S7Q C28 H9 SING N N 40 S7Q C28 H10 SING N N 41 S7Q C01 H11 SING N N 42 S7Q C01 H12 SING N N 43 S7Q C01 H13 SING N N 44 S7Q C03 H14 SING N N 45 S7Q C03 H15 SING N N 46 S7Q C04 H16 SING N N 47 S7Q C04 H17 SING N N 48 S7Q C05 H18 SING N N 49 S7Q C09 H19 SING N N 50 S7Q C14 H20 SING N N 51 S7Q C19 H21 SING N N 52 S7Q C19 H22 SING N N 53 S7Q C23 H23 SING N N 54 S7Q C25 H24 SING N N 55 S7Q C27 H25 SING N N 56 S7Q C27 H26 SING N N 57 S7Q C27 H27 SING N N 58 S7Q C30 H28 SING N N 59 S7Q C30 H29 SING N N 60 S7Q C30 H30 SING N N 61 S7Q N06 H31 SING N N 62 S7Q N11 H32 SING N N 63 S7Q N15 H33 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S7Q InChI InChI 1.03 "InChI=1S/C22H33N3O5S/c1-14(2)19(25-22(29)30-13-17-9-7-6-8-10-17)21(28)23-15(3)20(27)24-18(16(4)26)11-12-31-5/h6-10,14-15,18-19H,11-13H2,1-5H3,(H,23,28)(H,24,27)(H,25,29)/t15-,18-,19+/m1/s1" S7Q InChIKey InChI 1.03 XQQSDBOJVLTWFC-LZQZEXGQSA-N S7Q SMILES_CANONICAL CACTVS 3.385 "CSCC[C@@H](NC(=O)[C@@H](C)NC(=O)[C@@H](NC(=O)OCc1ccccc1)C(C)C)C(C)=O" S7Q SMILES CACTVS 3.385 "CSCC[CH](NC(=O)[CH](C)NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(C)=O" S7Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)N[C@H](CCSC)C(=O)C)NC(=O)[C@H](C(C)C)NC(=O)OCc1ccccc1" S7Q SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(C)C(=O)NC(CCSC)C(=O)C)NC(=O)OCc1ccccc1" # _pdbx_chem_comp_identifier.comp_id S7Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{R})-1-[[(3~{R})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id S7Q _pdbx_chem_comp_synonyms.name zVAM.fmk _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S7Q "Create component" 2020-11-10 PDBE S7Q "Modify synonyms" 2020-11-11 PDBE S7Q "Modify synonyms" 2021-03-01 PDBE S7Q "Initial release" 2021-07-28 RCSB S7Q "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id S7Q _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C30 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #