data_S8E # _chem_comp.id S8E _chem_comp.name "5-[[(2-bromoethylamino)-(ethylamino)phosphoryl]oxymethyl]-1-methyl-~{N},~{N}-bis(oxidanyl)imidazol-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H19 Br N5 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S8E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AWS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S8E C10 C1 C 0 1 N N N N N N 8.993 0.765 22.620 -1.742 -0.566 -0.721 C10 S8E 1 S8E C15 C2 C 0 1 N N N N N N 5.089 -0.445 20.938 3.348 -0.030 0.362 C15 S8E 2 S8E C20 C3 C 0 1 N N N N N N 7.738 -2.818 18.452 -0.277 -3.661 0.980 C20 S8E 3 S8E C01 C4 C 0 1 N N N N N N 11.814 1.973 22.937 -4.712 -1.350 -1.393 C01 S8E 4 S8E C03 C5 C 0 1 Y N N N N N 10.308 -0.006 22.601 -2.994 0.130 -0.254 C03 S8E 5 S8E C04 C6 C 0 1 Y N N N N N 10.477 -1.373 22.444 -3.059 1.218 0.533 C04 S8E 6 S8E C06 C7 C 0 1 Y N N N N N 12.495 -0.485 22.680 -5.103 0.668 0.070 C06 S8E 7 S8E C16 C8 C 0 1 N N N N N N 5.365 1.056 20.900 4.256 1.201 0.403 C16 S8E 8 S8E C19 C9 C 0 1 N N N N N N 8.096 -1.788 19.520 0.656 -2.451 1.047 C19 S8E 9 S8E N02 N1 N 0 1 Y N N N N N 11.553 0.557 22.753 -4.290 -0.225 -0.556 N02 S8E 10 S8E N05 N2 N 0 1 Y N N N N N 11.835 -1.658 22.497 -4.353 1.528 0.719 N05 S8E 11 S8E N07 N3 N 0 1 N N N N N N 13.929 -0.401 22.793 -6.487 0.672 0.026 N07 S8E 12 S8E N14 N4 N 0 1 N N N N N N 5.712 -1.017 22.112 1.957 0.379 0.602 N14 S8E 13 S8E N18 N5 N 0 1 N N N N N N 7.850 -2.319 20.850 1.021 -2.037 -0.314 N18 S8E 14 S8E O08 O1 O 0 1 N N N N N N 14.518 0.587 23.584 -7.049 -0.133 1.111 O08 S8E 15 S8E O09 O2 O 0 1 N N N N N N 14.708 -1.354 22.133 -7.009 2.039 0.063 O09 S8E 16 S8E O11 O3 O 0 1 N N N N N N 8.091 0.202 21.717 -0.598 0.107 -0.191 O11 S8E 17 S8E O13 O4 O 0 1 N N N N N N 7.841 -1.717 23.393 1.287 0.012 -1.867 O13 S8E 18 S8E P12 P1 P 0 1 N N R N N N 7.391 -1.241 22.086 0.913 -0.366 -0.486 P12 S8E 19 S8E BR1 BR1 BR 0 0 N N N N N N 4.066 1.890 19.724 6.116 0.653 0.081 BR1 S8E 20 S8E H102 H1 H 0 0 N N N N N N 9.182 1.812 22.340 -1.749 -1.599 -0.373 H102 S8E 21 S8E H101 H2 H 0 0 N N N N N N 8.565 0.728 23.632 -1.701 -0.549 -1.810 H101 S8E 22 S8E H152 H3 H 0 0 N N N N N N 4.003 -0.618 20.977 3.423 -0.505 -0.616 H152 S8E 23 S8E H151 H4 H 0 0 N N N N N N 5.503 -0.918 20.035 3.657 -0.736 1.133 H151 S8E 24 S8E H203 H5 H 0 0 N N N N N N 7.932 -2.396 17.455 -1.178 -3.396 0.427 H203 S8E 25 S8E H1 H6 H 0 1 N N N N N N 8.351 -3.720 18.593 0.231 -4.483 0.474 H1 S8E 26 S8E H201 H7 H 0 0 N N N N N N 6.673 -3.081 18.538 -0.548 -3.968 1.990 H201 S8E 27 S8E H012 H8 H 0 0 N N N N N N 12.898 2.137 23.031 -4.845 -2.236 -0.772 H012 S8E 28 S8E H013 H9 H 0 0 N N N N N N 11.432 2.532 22.070 -5.655 -1.105 -1.882 H013 S8E 29 S8E H011 H10 H 0 0 N N N N N N 11.309 2.323 23.850 -3.951 -1.546 -2.149 H011 S8E 30 S8E H041 H11 H 0 0 N N N N N N 9.686 -2.095 22.304 -2.216 1.752 0.945 H041 S8E 31 S8E H161 H12 H 0 0 N N N N N N 6.381 1.237 20.519 3.946 1.906 -0.368 H161 S8E 32 S8E H162 H13 H 0 0 N N N N N N 5.273 1.476 21.912 4.181 1.675 1.381 H162 S8E 33 S8E H191 H14 H 0 0 N N N N N N 9.160 -1.527 19.427 0.149 -1.629 1.553 H191 S8E 34 S8E H192 H15 H 0 0 N N N N N N 7.483 -0.887 19.372 1.557 -2.716 1.600 H192 S8E 35 S8E H141 H16 H 0 0 N N N N N N 5.503 -0.416 22.883 1.684 0.188 1.555 H141 S8E 36 S8E H181 H17 H 0 0 N N N N N N 7.121 -2.999 20.766 1.943 -2.366 -0.557 H181 S8E 37 S8E H081 H18 H 0 0 N N N N N N 13.842 1.143 23.952 -8.015 -0.160 1.121 H081 S8E 38 S8E H091 H19 H 0 0 N N N N N N 15.628 -1.178 22.294 -7.974 2.092 0.034 H091 S8E 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S8E C20 C19 SING N N 1 S8E C19 N18 SING N N 2 S8E BR1 C16 SING N N 3 S8E N18 P12 SING N N 4 S8E C16 C15 SING N N 5 S8E C15 N14 SING N N 6 S8E O11 P12 SING N N 7 S8E O11 C10 SING N N 8 S8E P12 N14 SING N N 9 S8E P12 O13 DOUB N N 10 S8E O09 N07 SING N N 11 S8E C04 N05 SING Y N 12 S8E C04 C03 DOUB Y N 13 S8E N05 C06 DOUB Y N 14 S8E C03 C10 SING N N 15 S8E C03 N02 SING Y N 16 S8E C06 N02 SING Y N 17 S8E C06 N07 SING N N 18 S8E N02 C01 SING N N 19 S8E N07 O08 SING N N 20 S8E C10 H102 SING N N 21 S8E C10 H101 SING N N 22 S8E C15 H152 SING N N 23 S8E C15 H151 SING N N 24 S8E C20 H203 SING N N 25 S8E C20 H1 SING N N 26 S8E C20 H201 SING N N 27 S8E C01 H012 SING N N 28 S8E C01 H013 SING N N 29 S8E C01 H011 SING N N 30 S8E C04 H041 SING N N 31 S8E C16 H161 SING N N 32 S8E C16 H162 SING N N 33 S8E C19 H191 SING N N 34 S8E C19 H192 SING N N 35 S8E N14 H141 SING N N 36 S8E N18 H181 SING N N 37 S8E O08 H081 SING N N 38 S8E O09 H091 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S8E InChI InChI 1.03 "InChI=1S/C9H19BrN5O4P/c1-3-12-20(18,13-5-4-10)19-7-8-6-11-9(14(8)2)15(16)17/h6,16-17H,3-5,7H2,1-2H3,(H2,12,13,18)/t20-/m1/s1" S8E InChIKey InChI 1.03 GTMVCVDSEXJDHD-HXUWFJFHSA-N S8E SMILES_CANONICAL CACTVS 3.385 "CCN[P@](=O)(NCCBr)OCc1cnc(N(O)O)n1C" S8E SMILES CACTVS 3.385 "CCN[P](=O)(NCCBr)OCc1cnc(N(O)O)n1C" S8E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN[P@](=O)(NCCBr)OCc1cnc(n1C)N(O)O" S8E SMILES "OpenEye OEToolkits" 2.0.7 "CCNP(=O)(NCCBr)OCc1cnc(n1C)N(O)O" # _pdbx_chem_comp_identifier.comp_id S8E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[(2-bromoethylamino)-(ethylamino)phosphoryl]oxymethyl]-1-methyl-~{N},~{N}-bis(oxidanyl)imidazol-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S8E "Create component" 2020-11-11 PDBE S8E "Initial release" 2020-12-02 RCSB S8E "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id S8E _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C20 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #