data_S8H # _chem_comp.id S8H _chem_comp.name "(2~{S})-2-azanyl-5-oxidanylidene-5-[[(2~{S})-1-oxidanylidene-1-[(2-oxidanylidene-2-propan-2-yloxy-ethyl)amino]-3-sulfanyl-propan-2-yl]amino]pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H23 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 349.403 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S8H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7AX6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S8H N1 N1 N 0 1 N N N N N N 18.214 -17.436 -3.178 -2.682 -0.092 0.125 N1 S8H 1 S8H N3 N2 N 0 1 N N N N N N 18.154 -11.230 -6.648 6.153 -0.373 1.626 N3 S8H 2 S8H C4 C1 C 0 1 N N N N N N 17.849 -18.577 -1.036 -5.098 -0.255 -0.036 C4 S8H 3 S8H C5 C2 C 0 1 N N N N N N 17.997 -18.710 -2.527 -3.850 -0.876 0.536 C5 S8H 4 S8H C6 C3 C 0 1 N N N N N N 18.483 -17.362 -4.482 -1.448 -0.466 0.516 C6 S8H 5 S8H C7 C4 C 0 1 N N S N N N 18.440 -15.990 -5.144 -0.247 0.340 0.094 C7 S8H 6 S8H C8 C5 C 0 1 N N N N N N 17.010 -15.472 -5.173 -0.384 1.771 0.618 C8 S8H 7 S8H C10 C6 C 0 1 N N N N N N 20.243 -12.904 -5.332 3.404 -0.694 0.602 C10 S8H 8 S8H C13 C7 C 0 1 N N N N N N 18.523 -13.269 -8.014 7.030 -0.680 -0.619 C13 S8H 9 S8H C1 C8 C 0 1 N N N N N N 19.064 -19.340 1.543 -7.729 -0.744 -1.756 C1 S8H 10 S8H C11 C9 C 0 1 N N N N N N 20.433 -12.251 -6.699 4.603 -0.316 -0.269 C11 S8H 11 S8H C12 C10 C 0 1 N N S N N N 19.144 -11.968 -7.483 5.871 -0.950 0.305 C12 S8H 12 S8H C2 C11 C 0 1 N N N N N N 19.039 -17.943 0.963 -7.456 -0.156 -0.371 C2 S8H 13 S8H C3 C12 C 0 1 N N N N N N 20.275 -17.127 1.275 -8.673 -0.381 0.529 C3 S8H 14 S8H C9 C13 C 0 1 N N N N N N 20.311 -14.417 -5.266 2.154 -0.069 0.037 C9 S8H 15 S8H N2 N3 N 0 1 N N N N N N 19.332 -15.002 -4.571 0.967 -0.267 0.644 N2 S8H 16 S8H O1 O1 O 0 1 N N N N N N 18.968 -18.074 -0.493 -6.296 -0.808 0.212 O1 S8H 17 S8H O2 O2 O 0 1 N N N N N N 16.879 -18.891 -0.406 -5.021 0.740 -0.716 O2 S8H 18 S8H O3 O3 O 0 1 N N N N N N 18.718 -18.341 -5.188 -1.304 -1.451 1.209 O3 S8H 19 S8H O4 O4 O 0 1 N N N N N N 21.203 -15.063 -5.815 2.217 0.612 -0.965 O4 S8H 20 S8H O5 O5 O 0 1 N N N N N N 17.335 -13.500 -7.721 7.197 -1.426 -1.722 O5 S8H 21 S8H O6 O6 O 0 1 N N N N N N 19.257 -14.008 -8.705 7.810 0.207 -0.366 O6 S8H 22 S8H S1 S1 S 0 1 N N N N N N 16.443 -14.578 -3.695 0.986 2.780 -0.014 S1 S8H 23 S8H H10 H1 H 0 1 N N N N N N 18.161 -16.595 -2.640 -2.797 0.693 -0.432 H10 S8H 24 S8H H21 H2 H 0 1 N N N N N N 18.568 -10.386 -6.308 6.949 -0.821 2.055 H21 S8H 25 S8H H22 H3 H 0 1 N N N N N N 17.351 -11.008 -7.201 6.290 0.625 1.562 H22 S8H 26 S8H H9 H5 H 0 1 N N N N N N 17.080 -19.162 -2.934 -3.750 -1.897 0.167 H9 S8H 27 S8H H8 H6 H 0 1 N N N N N N 18.855 -19.365 -2.739 -3.915 -0.888 1.624 H8 S8H 28 S8H H11 H7 H 0 1 N N N N N N 18.742 -16.138 -6.191 -0.184 0.356 -0.994 H11 S8H 29 S8H H12 H8 H 0 1 N N N N N N 16.918 -14.791 -6.032 -1.331 2.193 0.281 H12 S8H 30 S8H H13 H9 H 0 1 N N N N N N 16.344 -16.336 -5.317 -0.356 1.764 1.707 H13 S8H 31 S8H H17 H10 H 0 1 N N N N N N 21.025 -12.509 -4.666 3.293 -1.778 0.617 H17 S8H 32 S8H H16 H11 H 0 1 N N N N N N 19.254 -12.601 -4.956 3.563 -0.332 1.618 H16 S8H 33 S8H H2 H12 H 0 1 N N N N N N 19.117 -19.281 2.640 -7.921 -1.814 -1.665 H2 S8H 34 S8H H3 H13 H 0 1 N N N N N N 18.149 -19.875 1.249 -8.599 -0.255 -2.194 H3 S8H 35 S8H H1 H14 H 0 1 N N N N N N 19.943 -19.880 1.162 -6.862 -0.584 -2.397 H1 S8H 36 S8H H18 H15 H 0 1 N N N N N N 21.060 -12.918 -7.309 4.443 -0.678 -1.285 H18 S8H 37 S8H H19 H16 H 0 1 N N N N N N 20.954 -11.294 -6.548 4.714 0.768 -0.284 H19 S8H 38 S8H H20 H17 H 0 1 N N N N N N 19.406 -11.341 -8.348 5.727 -2.026 0.403 H20 S8H 39 S8H H4 H18 H 0 1 N N N N N N 18.151 -17.412 1.335 -7.264 0.914 -0.462 H4 S8H 40 S8H H6 H19 H 0 1 N N N N N N 20.368 -17.003 2.364 -8.865 -1.450 0.619 H6 S8H 41 S8H H7 H20 H 0 1 N N N N N N 21.164 -17.646 0.888 -8.478 0.039 1.515 H7 S8H 42 S8H H5 H21 H 0 1 N N N N N N 20.191 -16.139 0.800 -9.543 0.109 0.091 H5 S8H 43 S8H H15 H22 H 0 1 N N N N N N 19.209 -14.747 -3.612 0.917 -0.812 1.445 H15 S8H 44 S8H H14 H23 H 0 1 N N N N N N 17.069 -14.328 -8.104 7.955 -1.216 -2.284 H14 S8H 45 S8H H24 H24 H 0 1 N N N N N N 15.221 -14.272 -4.016 0.740 3.991 0.518 H24 S8H 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S8H O6 C13 DOUB N N 1 S8H C13 O5 SING N N 2 S8H C13 C12 SING N N 3 S8H C12 C11 SING N N 4 S8H C12 N3 SING N N 5 S8H C11 C10 SING N N 6 S8H O4 C9 DOUB N N 7 S8H C10 C9 SING N N 8 S8H C9 N2 SING N N 9 S8H O3 C6 DOUB N N 10 S8H C8 C7 SING N N 11 S8H C8 S1 SING N N 12 S8H C7 N2 SING N N 13 S8H C7 C6 SING N N 14 S8H C6 N1 SING N N 15 S8H N1 C5 SING N N 16 S8H C5 C4 SING N N 17 S8H C4 O1 SING N N 18 S8H C4 O2 DOUB N N 19 S8H O1 C2 SING N N 20 S8H C2 C3 SING N N 21 S8H C2 C1 SING N N 22 S8H N1 H10 SING N N 23 S8H N3 H21 SING N N 24 S8H N3 H22 SING N N 25 S8H C5 H9 SING N N 26 S8H C5 H8 SING N N 27 S8H C7 H11 SING N N 28 S8H C8 H12 SING N N 29 S8H C8 H13 SING N N 30 S8H C10 H17 SING N N 31 S8H C10 H16 SING N N 32 S8H C1 H2 SING N N 33 S8H C1 H3 SING N N 34 S8H C1 H1 SING N N 35 S8H C11 H18 SING N N 36 S8H C11 H19 SING N N 37 S8H C12 H20 SING N N 38 S8H C2 H4 SING N N 39 S8H C3 H6 SING N N 40 S8H C3 H7 SING N N 41 S8H C3 H5 SING N N 42 S8H N2 H15 SING N N 43 S8H O5 H14 SING N N 44 S8H S1 H24 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S8H InChI InChI 1.03 "InChI=1S/C13H23N3O6S/c1-7(2)22-11(18)5-15-12(19)9(6-23)16-10(17)4-3-8(14)13(20)21/h7-9,23H,3-6,14H2,1-2H3,(H,15,19)(H,16,17)(H,20,21)/t8-,9+/m0/s1" S8H InChIKey InChI 1.03 MVNCPACIPXNJIW-DTWKUNHWSA-N S8H SMILES_CANONICAL CACTVS 3.385 "CC(C)OC(=O)CNC(=O)[C@@H](CS)NC(=O)CC[C@H](N)C(O)=O" S8H SMILES CACTVS 3.385 "CC(C)OC(=O)CNC(=O)[CH](CS)NC(=O)CC[CH](N)C(O)=O" S8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)CNC(=O)[C@@H](CS)NC(=O)CC[C@@H](C(=O)O)N" S8H SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)CNC(=O)C(CS)NC(=O)CCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id S8H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-5-oxidanylidene-5-[[(2~{S})-1-oxidanylidene-1-[(2-oxidanylidene-2-propan-2-yloxy-ethyl)amino]-3-sulfanyl-propan-2-yl]amino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S8H "Create component" 2020-11-11 PDBE S8H "Initial release" 2020-12-02 RCSB S8H "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id S8H _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom S1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #