data_S8M # _chem_comp.id S8M _chem_comp.name "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[[(3~{S})-3-azanyl-3-(1~{H}-1,2,3,4-tetrazol-5-yl)propyl]sulfanylmethyl]oxolane-3,4-diol" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C14 H20 N10 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-10-23 _chem_comp.pdbx_modified_date 2015-12-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 408.439 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S8M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EEG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S8M C01 C1 C 0 1 Y N N -30.817 -26.731 -2.355 6.802 -0.479 0.889 C01 S8M 1 S8M N02 N1 N 0 1 Y N N -30.682 -25.767 -3.265 5.601 0.058 0.836 N02 S8M 2 S8M C03 C2 C 0 1 Y N N -29.587 -24.985 -3.319 4.591 -0.595 0.272 C03 S8M 3 S8M C04 C3 C 0 1 Y N N -28.563 -25.234 -2.387 4.821 -1.872 -0.269 C04 S8M 4 S8M C05 C4 C 0 1 Y N N -28.739 -26.297 -1.421 6.119 -2.403 -0.188 C05 S8M 5 S8M N06 N2 N 0 1 Y N N -29.876 -26.991 -1.450 7.066 -1.675 0.395 N06 S8M 6 S8M N07 N3 N 0 1 N N N -27.723 -26.606 -0.414 6.405 -3.655 -0.703 N07 S8M 7 S8M N08 N4 N 0 1 Y N N -27.566 -24.324 -2.667 3.642 -2.309 -0.775 N08 S8M 8 S8M C09 C5 C 0 1 Y N N -27.937 -23.559 -3.724 2.727 -1.405 -0.583 C09 S8M 9 S8M N10 N5 N 0 1 Y N N -29.170 -23.963 -4.135 3.262 -0.328 0.059 N10 S8M 10 S8M C11 C6 C 0 1 N N R -29.902 -23.417 -5.216 2.550 0.891 0.451 C11 S8M 11 S8M C12 C7 C 0 1 N N R -30.016 -21.915 -5.156 2.716 1.991 -0.628 C12 S8M 12 S8M C13 C8 C 0 1 N N S -30.107 -21.466 -6.565 1.464 2.870 -0.390 C13 S8M 13 S8M C14 C9 C 0 1 N N S -29.648 -22.656 -7.380 0.489 1.943 0.362 C14 S8M 14 S8M O15 O1 O 0 1 N N N -29.160 -23.639 -6.420 1.125 0.659 0.480 O15 S8M 15 S8M C16 C10 C 0 1 N N N -28.622 -22.324 -8.372 -0.814 1.807 -0.428 C16 S8M 16 S8M S17 S1 S 0 1 N N N -29.163 -21.118 -9.573 -2.006 0.836 0.535 S17 S8M 17 S8M C18 C11 C 0 1 N N N -29.823 -21.998 -10.969 -3.461 0.786 -0.548 C18 S8M 18 S8M C19 C12 C 0 1 N N N -31.392 -22.007 -10.766 -4.576 -0.011 0.132 C19 S8M 19 S8M C20 C13 C 0 1 N N S -32.177 -22.768 -11.801 -5.802 -0.054 -0.781 C20 S8M 20 S8M C21 C14 C 0 1 Y N N -31.830 -22.167 -13.150 -6.855 -0.940 -0.167 C21 S8M 21 S8M N22 N6 N 0 1 Y N N -31.472 -22.824 -14.241 -8.130 -0.604 0.103 N22 S8M 22 S8M N23 N7 N 0 1 Y N N -31.262 -21.907 -15.225 -8.695 -1.642 0.620 N23 S8M 23 S8M N24 N8 N 0 1 Y N N -31.492 -20.661 -14.709 -7.833 -2.596 0.682 N24 S8M 24 S8M N25 N9 N 0 1 Y N N -31.830 -20.804 -13.431 -6.709 -2.189 0.202 N25 S8M 25 S8M N26 N10 N 0 1 N N N -31.823 -24.141 -11.802 -6.339 1.304 -0.944 N26 S8M 26 S8M O27 O2 O 0 1 N N N -31.440 -21.126 -6.877 1.795 4.006 0.410 O27 S8M 27 S8M O28 O3 O 0 1 N N N -31.182 -21.547 -4.404 3.913 2.740 -0.413 O28 S8M 28 S8M H1 H1 H 0 1 N N N -31.721 -27.322 -2.352 7.602 0.081 1.351 H1 S8M 29 S8M H2 H2 H 0 1 N N N -28.043 -27.357 0.164 5.706 -4.177 -1.127 H2 S8M 30 S8M H3 H3 H 0 1 N N N -26.874 -26.875 -0.869 7.306 -4.011 -0.641 H3 S8M 31 S8M H4 H4 H 0 1 N N N -27.353 -22.764 -4.165 1.694 -1.494 -0.887 H4 S8M 32 S8M H5 H5 H 0 1 N N N -30.904 -23.865 -5.284 2.904 1.246 1.419 H5 S8M 33 S8M H6 H6 H 0 1 N N N -29.111 -21.498 -4.690 2.704 1.559 -1.629 H6 S8M 34 S8M H7 H7 H 0 1 N N N -29.430 -20.616 -6.736 1.033 3.185 -1.340 H7 S8M 35 S8M H8 H8 H 0 1 N N N -30.523 -23.072 -7.901 0.284 2.348 1.353 H8 S8M 36 S8M H9 H9 H 0 1 N N N -28.340 -23.245 -8.904 -1.225 2.797 -0.623 H9 S8M 37 S8M H10 H10 H 0 1 N N N -27.744 -21.922 -7.845 -0.615 1.303 -1.373 H10 S8M 38 S8M H11 H11 H 0 1 N N N -29.433 -23.026 -10.993 -3.806 1.802 -0.740 H11 S8M 39 S8M H12 H12 H 0 1 N N N -29.560 -21.484 -11.905 -3.195 0.308 -1.491 H12 S8M 40 S8M H13 H13 H 0 1 N N N -31.741 -20.964 -10.776 -4.231 -1.027 0.325 H13 S8M 41 S8M H14 H14 H 0 1 N N N -31.604 -22.455 -9.784 -4.841 0.467 1.075 H14 S8M 42 S8M H15 H15 H 0 1 N N N -33.253 -22.643 -11.612 -5.516 -0.450 -1.755 H15 S8M 43 S8M H16 H16 H 0 1 N N N -31.373 -23.815 -14.327 -8.547 0.257 -0.061 H16 S8M 44 S8M H17 H17 H 0 1 N N N -32.049 -24.545 -10.915 -7.111 1.313 -1.594 H17 S8M 45 S8M H18 H18 H 0 1 N N N -32.329 -24.615 -12.523 -6.611 1.694 -0.054 H18 S8M 46 S8M H20 H20 H 0 1 N N N -31.707 -20.378 -6.355 2.450 4.593 0.007 H20 S8M 47 S8M H21 H21 H 0 1 N N N -31.090 -21.850 -3.508 4.061 3.440 -1.063 H21 S8M 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S8M N23 N24 DOUB Y N 1 S8M N23 N22 SING Y N 2 S8M N24 N25 SING Y N 3 S8M N22 C21 SING Y N 4 S8M N25 C21 DOUB Y N 5 S8M C21 C20 SING N N 6 S8M N26 C20 SING N N 7 S8M C20 C19 SING N N 8 S8M C18 C19 SING N N 9 S8M C18 S17 SING N N 10 S8M S17 C16 SING N N 11 S8M C16 C14 SING N N 12 S8M C14 C13 SING N N 13 S8M C14 O15 SING N N 14 S8M O27 C13 SING N N 15 S8M C13 C12 SING N N 16 S8M O15 C11 SING N N 17 S8M C11 C12 SING N N 18 S8M C11 N10 SING N N 19 S8M C12 O28 SING N N 20 S8M N10 C09 SING Y N 21 S8M N10 C03 SING Y N 22 S8M C09 N08 DOUB Y N 23 S8M C03 N02 DOUB Y N 24 S8M C03 C04 SING Y N 25 S8M N02 C01 SING Y N 26 S8M N08 C04 SING Y N 27 S8M C04 C05 DOUB Y N 28 S8M C01 N06 DOUB Y N 29 S8M N06 C05 SING Y N 30 S8M C05 N07 SING N N 31 S8M C01 H1 SING N N 32 S8M N07 H2 SING N N 33 S8M N07 H3 SING N N 34 S8M C09 H4 SING N N 35 S8M C11 H5 SING N N 36 S8M C12 H6 SING N N 37 S8M C13 H7 SING N N 38 S8M C14 H8 SING N N 39 S8M C16 H9 SING N N 40 S8M C16 H10 SING N N 41 S8M C18 H11 SING N N 42 S8M C18 H12 SING N N 43 S8M C19 H13 SING N N 44 S8M C19 H14 SING N N 45 S8M C20 H15 SING N N 46 S8M N22 H16 SING N N 47 S8M N26 H17 SING N N 48 S8M N26 H18 SING N N 49 S8M O27 H20 SING N N 50 S8M O28 H21 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S8M InChI InChI 1.03 "InChI=1S/C14H20N10O3S/c15-6(12-20-22-23-21-12)1-2-28-3-7-9(25)10(26)14(27-7)24-5-19-8-11(16)17-4-18-13(8)24/h4-7,9-10,14,25-26H,1-3,15H2,(H2,16,17,18)(H,20,21,22,23)/t6-,7+,9+,10+,14+/m0/s1" S8M InChIKey InChI 1.03 PRVMDGXUVZTDPT-XLZJSAHRSA-N S8M SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)c4[nH]nnn4" S8M SMILES CACTVS 3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)c4[nH]nnn4" S8M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](c4[nH]nnn4)N)O)O)N" S8M SMILES "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CSCCC(c4[nH]nnn4)N)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S8M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[[(3~{S})-3-azanyl-3-(1~{H}-1,2,3,4-tetrazol-5-yl)propyl]sulfanylmethyl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S8M "Create component" 2015-10-23 RCSB S8M "Initial release" 2015-12-23 RCSB #