data_S8R # _chem_comp.id S8R _chem_comp.name "N-[4-({[(6R)-2-amino-5-formyl-4-hydroxy-5,6,7,8-tetrahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 N8 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-23 _chem_comp.pdbx_modified_date 2024-08-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 602.553 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S8R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TQF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S8R C C1 C 0 1 N N N N N N 14.787 13.331 9.514 0.889 3.387 0.920 C S8R 1 S8R O O1 O 0 1 N N N N N N 13.700 13.135 9.934 1.153 4.017 1.927 O S8R 2 S8R CB1 C2 C 0 1 N N N N N N 14.963 10.128 9.479 4.207 2.623 -0.463 CB1 S8R 3 S8R CB2 C3 C 0 1 N N N N N N 15.846 5.130 6.411 6.511 -3.035 -0.055 CB2 S8R 4 S8R CG1 C4 C 0 1 N N N N N N 15.883 9.763 8.310 4.126 1.213 0.125 CG1 S8R 5 S8R NG1 N1 N 0 1 N N N N N N 15.846 12.362 9.695 1.860 3.098 0.032 NG1 S8R 6 S8R CG2 C5 C 0 1 N N N N N N 17.172 5.260 5.660 7.293 -2.502 1.147 CG2 S8R 7 S8R NG2 N2 N 0 1 N N N N N N 15.666 7.371 7.364 5.184 -0.990 -0.255 NG2 S8R 8 S8R CD1 C6 C 0 1 N N N N N N 15.243 8.761 7.346 5.084 0.308 -0.605 CD1 S8R 9 S8R CD2 C7 C 0 1 N N N N N N 17.002 5.468 4.152 7.682 -3.649 2.043 CD2 S8R 10 S8R C11 C8 C 0 1 Y N N N N N 15.122 14.584 8.713 -0.494 2.935 0.675 C11 S8R 11 S8R C12 C9 C 0 1 Y N N N N N 16.452 14.916 8.518 -1.501 3.230 1.599 C12 S8R 12 S8R C13 C10 C 0 1 Y N N N N N 16.775 16.037 7.775 -2.790 2.807 1.367 C13 S8R 13 S8R C14 C11 C 0 1 Y N N N N N 15.756 16.805 7.232 -3.092 2.087 0.214 C14 S8R 14 S8R C15 C12 C 0 1 Y N N N N N 14.428 16.469 7.417 -2.091 1.792 -0.707 C15 S8R 15 S8R C16 C13 C 0 1 Y N N N N N 14.109 15.354 8.165 -0.801 2.217 -0.484 C16 S8R 16 S8R C2 C14 C 0 1 Y N N N N N 11.067 20.916 6.205 -5.449 -4.101 0.258 C2 S8R 17 S8R C4 C15 C 0 1 Y N N N N N 13.193 21.090 7.148 -6.170 -2.179 1.319 C4 S8R 18 S8R C4A C16 C 0 1 Y N N N N N 13.759 20.734 5.909 -6.173 -1.526 0.092 C4A S8R 19 S8R C5A C17 C 0 1 N N N N N N 16.218 21.450 6.233 -7.222 0.431 0.988 C5A S8R 20 S8R C6 C18 C 0 1 N N R N N N 15.587 19.655 4.705 -6.205 0.559 -1.239 C6 S8R 21 S8R C7 C19 C 0 1 N N N N N N 14.870 19.850 3.372 -6.522 -0.340 -2.442 C7 S8R 22 S8R C8A C20 C 0 1 Y N N N N N 12.883 20.473 4.841 -5.792 -2.234 -1.047 C8A S8R 23 S8R C9 C21 C 0 1 N N N N N N 15.273 18.211 5.258 -4.714 0.903 -1.229 C9 S8R 24 S8R CA1 C22 C 0 1 N N R N N N 15.626 11.131 10.420 3.234 3.542 0.278 CA1 S8R 25 S8R CA2 C23 C 0 1 N N S N N N 15.051 6.434 6.442 6.116 -1.870 -0.965 CA2 S8R 26 S8R CT1 C24 C 0 1 N N N N N N 16.996 10.607 10.813 3.402 4.955 -0.217 CT1 S8R 27 S8R CT2 C25 C 0 1 N N N N N N 13.615 6.151 6.878 5.454 -2.405 -2.208 CT2 S8R 28 S8R N1 N3 N 0 1 Y N N N N N 11.568 20.574 5.025 -5.440 -3.510 -0.928 N1 S8R 29 S8R N10 N4 N 0 1 N N N N N N 16.071 17.976 6.448 -4.395 1.661 -0.017 N10 S8R 30 S8R N3 N5 N 0 1 Y N N N N N 11.863 21.173 7.249 -5.804 -3.458 1.361 N3 S8R 31 S8R N5 N6 N 0 1 N N N N N N 15.190 20.610 5.642 -6.554 -0.176 -0.012 N5 S8R 32 S8R N8 N7 N 0 1 N N N N N N 13.424 20.070 3.467 -5.784 -1.603 -2.284 N8 S8R 33 S8R NA2 N8 N 0 1 N N N N N N 9.625 21.008 6.353 -5.082 -5.434 0.347 NA2 S8R 34 S8R O11 O2 O 0 1 N N N N N N 18.023 11.277 10.521 2.469 5.533 -0.724 O11 S8R 35 S8R O12 O3 O 0 1 N N N N N N 12.723 5.975 6.008 4.320 -2.085 -2.474 O12 S8R 36 S8R O21 O4 O 0 1 N N N N N N 17.101 9.510 11.418 4.587 5.573 -0.095 O21 S8R 37 S8R O22 O5 O 0 1 N N N N N N 13.318 6.091 8.101 6.124 -3.238 -3.020 O22 S8R 38 S8R O4 O6 O 0 1 N N N N N N 13.990 21.361 8.259 -6.532 -1.526 2.451 O4 S8R 39 S8R O5B O7 O 0 1 N N N N N N 15.964 22.296 7.014 -7.613 1.572 0.852 O5B S8R 40 S8R OEB O8 O 0 1 N N N N N N 14.405 9.110 6.583 5.766 0.747 -1.507 OEB S8R 41 S8R OEC O9 O 0 1 N N N N N N 15.887 5.274 3.597 7.365 -4.778 1.750 OEC S8R 42 S8R OED O10 O 0 1 N N N N N N 17.987 5.837 3.456 8.379 -3.418 3.166 OED S8R 43 S8R HB12 H1 H 0 0 N N N N N N 14.037 10.569 9.081 5.222 3.004 -0.353 HB12 S8R 44 S8R HB11 H2 H 0 0 N N N N N N 14.721 9.215 10.043 3.944 2.591 -1.520 HB11 S8R 45 S8R HB23 H3 H 0 0 N N N N N N 15.237 4.359 5.917 7.133 -3.736 -0.612 HB23 S8R 46 S8R HB22 H4 H 0 0 N N N N N N 16.057 4.823 7.446 5.612 -3.544 0.293 HB22 S8R 47 S8R HG13 H5 H 0 0 N N N N N N 16.126 10.680 7.754 4.389 1.244 1.183 HG13 S8R 48 S8R HG12 H6 H 0 0 N N N N N N 16.807 9.323 8.713 3.111 0.831 0.015 HG12 S8R 49 S8R HG11 H7 H 0 0 N N N N N N 16.750 12.548 9.310 1.649 2.596 -0.771 HG11 S8R 50 S8R HG22 H8 H 0 0 N N N N N N 17.722 6.120 6.070 8.192 -1.993 0.798 HG22 S8R 51 S8R HG23 H9 H 0 0 N N N N N N 17.755 4.341 5.821 6.671 -1.801 1.703 HG23 S8R 52 S8R HG21 H10 H 0 0 N N N N N N 16.371 7.064 8.003 4.639 -1.342 0.466 HG21 S8R 53 S8R H121 H11 H 0 0 N N N N N N 17.233 14.303 8.944 -1.268 3.788 2.494 H121 S8R 54 S8R H131 H12 H 0 0 N N N N N N 17.808 16.311 7.620 -3.569 3.034 2.081 H131 S8R 55 S8R H151 H13 H 0 0 N N N N N N 13.647 17.074 6.980 -2.328 1.233 -1.600 H151 S8R 56 S8R H161 H14 H 0 0 N N N N N N 13.075 15.083 8.322 -0.026 1.991 -1.201 H161 S8R 57 S8R H5A1 H15 H 0 0 N N N N N N 17.248 21.294 5.948 -7.411 -0.098 1.911 H5A1 S8R 58 S8R H61 H16 H 0 1 N N N N N N 16.671 19.720 4.530 -6.793 1.475 -1.299 H61 S8R 59 S8R H71 H17 H 0 1 N N N N N N 15.315 20.722 2.871 -7.592 -0.543 -2.478 H71 S8R 60 S8R H72 H18 H 0 1 N N N N N N 15.038 18.951 2.761 -6.210 0.154 -3.362 H72 S8R 61 S8R H92 H19 H 0 1 N N N N N N 14.205 18.137 5.510 -4.129 -0.017 -1.247 H92 S8R 62 S8R H91 H20 H 0 1 N N N N N N 15.522 17.461 4.493 -4.473 1.503 -2.106 H91 S8R 63 S8R HA11 H21 H 0 0 N N N N N N 15.003 11.291 11.312 3.442 3.504 1.347 HA11 S8R 64 S8R HA21 H22 H 0 0 N N N N N N 15.036 6.863 5.429 7.008 -1.307 -1.242 HA21 S8R 65 S8R H101 H23 H 0 0 N N N N N N 15.967 18.773 7.043 -5.093 1.865 0.625 H101 S8R 66 S8R H81 H24 H 0 1 N N N N N N 13.184 20.795 2.821 -5.300 -1.988 -3.031 H81 S8R 67 S8R HA22 H25 H 0 0 N N N N N N 9.185 20.785 5.483 -4.823 -5.920 -0.452 HA22 S8R 68 S8R HA23 H26 H 0 0 N N N N N N 9.320 20.365 7.055 -5.083 -5.881 1.208 HA23 S8R 69 S8R H1 H27 H 0 1 N N N N N N 18.018 9.326 11.584 4.647 6.479 -0.427 H1 S8R 70 S8R H2 H28 H 0 1 N N N N N N 12.391 5.907 8.193 5.657 -3.555 -3.805 H2 S8R 71 S8R H41 H29 H 0 1 N N N N N N 14.815 21.736 7.974 -7.457 -1.656 2.701 H41 S8R 72 S8R H3 H30 H 0 1 N N N N N N 17.720 5.920 2.548 8.605 -4.186 3.708 H3 S8R 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S8R C O DOUB N N 1 S8R C NG1 SING N N 2 S8R C C11 SING N N 3 S8R CB1 CG1 SING N N 4 S8R CB1 CA1 SING N N 5 S8R CB2 CG2 SING N N 6 S8R CB2 CA2 SING N N 7 S8R CG1 CD1 SING N N 8 S8R NG1 CA1 SING N N 9 S8R CG2 CD2 SING N N 10 S8R NG2 CD1 SING N N 11 S8R NG2 CA2 SING N N 12 S8R CD1 OEB DOUB N N 13 S8R CD2 OEC DOUB N N 14 S8R CD2 OED SING N N 15 S8R C11 C12 DOUB Y N 16 S8R C11 C16 SING Y N 17 S8R C12 C13 SING Y N 18 S8R C13 C14 DOUB Y N 19 S8R C14 C15 SING Y N 20 S8R C14 N10 SING N N 21 S8R C15 C16 DOUB Y N 22 S8R C2 N1 DOUB Y N 23 S8R C2 N3 SING Y N 24 S8R C2 NA2 SING N N 25 S8R C4 C4A SING Y N 26 S8R C4 N3 DOUB Y N 27 S8R C4 O4 SING N N 28 S8R C4A C8A DOUB Y N 29 S8R C4A N5 SING N N 30 S8R C5A N5 SING N N 31 S8R C5A O5B DOUB N N 32 S8R C6 C7 SING N N 33 S8R C6 C9 SING N N 34 S8R C6 N5 SING N N 35 S8R C7 N8 SING N N 36 S8R C8A N1 SING Y N 37 S8R C8A N8 SING N N 38 S8R C9 N10 SING N N 39 S8R CA1 CT1 SING N N 40 S8R CA2 CT2 SING N N 41 S8R CT1 O11 DOUB N N 42 S8R CT1 O21 SING N N 43 S8R CT2 O12 DOUB N N 44 S8R CT2 O22 SING N N 45 S8R CB1 HB12 SING N N 46 S8R CB1 HB11 SING N N 47 S8R CB2 HB23 SING N N 48 S8R CB2 HB22 SING N N 49 S8R CG1 HG13 SING N N 50 S8R CG1 HG12 SING N N 51 S8R NG1 HG11 SING N N 52 S8R CG2 HG22 SING N N 53 S8R CG2 HG23 SING N N 54 S8R NG2 HG21 SING N N 55 S8R C12 H121 SING N N 56 S8R C13 H131 SING N N 57 S8R C15 H151 SING N N 58 S8R C16 H161 SING N N 59 S8R C5A H5A1 SING N N 60 S8R C6 H61 SING N N 61 S8R C7 H71 SING N N 62 S8R C7 H72 SING N N 63 S8R C9 H92 SING N N 64 S8R C9 H91 SING N N 65 S8R CA1 HA11 SING N N 66 S8R CA2 HA21 SING N N 67 S8R N10 H101 SING N N 68 S8R N8 H81 SING N N 69 S8R NA2 HA22 SING N N 70 S8R NA2 HA23 SING N N 71 S8R O21 H1 SING N N 72 S8R O22 H2 SING N N 73 S8R O4 H41 SING N N 74 S8R OED H3 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S8R SMILES ACDLabs 12.01 "O=C(O)C(CCC(=O)O)NC(=O)CCC(NC(=O)c1ccc(cc1)NCC1CNc2nc(N)nc(O)c2N1C=O)C(=O)O" S8R InChI InChI 1.06 "InChI=1S/C25H30N8O10/c26-25-31-20-19(22(39)32-25)33(11-34)14(10-28-20)9-27-13-3-1-12(2-4-13)21(38)30-16(24(42)43)5-7-17(35)29-15(23(40)41)6-8-18(36)37/h1-4,11,14-16,27H,5-10H2,(H,29,35)(H,30,38)(H,36,37)(H,40,41)(H,42,43)(H4,26,28,31,32,39)/t14-,15+,16+/m1/s1" S8R InChIKey InChI 1.06 QZHOZGNCYBQAQZ-PMPSAXMXSA-N S8R SMILES_CANONICAL CACTVS 3.385 "Nc1nc(O)c2N(C=O)[C@H](CNc3ccc(cc3)C(=O)N[C@H](CCC(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O)CNc2n1" S8R SMILES CACTVS 3.385 "Nc1nc(O)c2N(C=O)[CH](CNc3ccc(cc3)C(=O)N[CH](CCC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O)CNc2n1" S8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)O)C(=O)O)C(=O)O)NC[C@H]2CNc3c(c(nc(n3)N)O)N2C=O" S8R SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O)O)C(=O)O)NCC2CNc3c(c(nc(n3)N)O)N2C=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S8R "SYSTEMATIC NAME" ACDLabs 12.01 "N-[4-({[(6R)-2-amino-5-formyl-4-hydroxy-5,6,7,8-tetrahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-glutamic acid" S8R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(4~{S})-4-[[4-[[(6~{S})-2-azanyl-5-methanoyl-4-oxidanyl-7,8-dihydro-6~{H}-pteridin-6-yl]methylamino]phenyl]carbonylamino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S8R "Create component" 2023-08-23 RCSB S8R "Initial release" 2024-08-21 RCSB #