data_S96 # _chem_comp.id S96 _chem_comp.name "(7P)-3-{5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-7-(thiophen-2-yl)-3H-imidazo[4,5-b]pyridine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 N3 O13 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-27 _chem_comp.pdbx_modified_date 2023-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 573.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S96 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DH4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S96 C14 C1 C 0 1 N N N 16.651 34.084 -29.448 0.920 -2.311 -0.981 C14 S96 1 S96 C15 C2 C 0 1 N N R 15.596 34.809 -30.333 -0.200 -2.462 0.049 C15 S96 2 S96 C16 C3 C 0 1 N N S 14.940 33.762 -31.262 -1.149 -3.613 -0.353 C16 S96 3 S96 C17 C4 C 0 1 N N R 16.105 33.518 -32.293 -2.550 -3.104 0.054 C17 S96 4 S96 C18 C5 C 0 1 N N R 16.573 34.699 -32.505 -2.282 -1.706 0.654 C18 S96 5 S96 C20 C6 C 0 1 Y N N 18.886 35.351 -31.832 -3.359 0.081 -0.763 C20 S96 6 S96 C22 C7 C 0 1 Y N N 20.110 34.300 -33.369 -5.257 0.368 0.247 C22 S96 7 S96 C23 C8 C 0 1 Y N N 21.221 33.688 -34.303 -6.539 0.748 0.699 C23 S96 8 S96 C24 C9 C 0 1 Y N N 22.678 33.978 -34.042 -7.319 1.781 -0.008 C24 S96 9 S96 C26 C10 C 0 1 Y N N 25.177 33.806 -34.032 -8.273 3.783 -1.183 C26 S96 10 S96 C27 C11 C 0 1 Y N N 24.804 34.974 -33.281 -9.121 2.759 -1.044 C27 S96 11 S96 C28 C12 C 0 1 Y N N 23.200 35.082 -33.289 -8.605 1.656 -0.399 C28 S96 12 S96 C29 C13 C 0 1 Y N N 20.830 32.825 -35.438 -7.045 0.115 1.837 C29 S96 13 S96 C30 C14 C 0 1 Y N N 19.382 32.540 -35.694 -6.285 -0.848 2.472 C30 S96 14 S96 C32 C15 C 0 1 Y N N 18.766 34.033 -33.610 -4.555 -0.621 0.956 C32 S96 15 S96 N19 N1 N 0 1 Y N N 18.022 34.689 -32.647 -3.358 -0.780 0.292 N19 S96 16 S96 N21 N2 N 0 1 Y N N 20.188 35.105 -32.283 -4.474 0.753 -0.787 N21 S96 17 S96 N31 N3 N 0 1 Y N N 18.348 33.123 -34.807 -5.089 -1.185 2.029 N31 S96 18 S96 O02 O1 O 0 1 N N N 19.664 35.163 -27.372 3.964 -2.112 -1.663 O02 S96 19 S96 O03 O2 O 0 1 N N N 17.537 34.713 -26.133 2.711 -0.212 -2.755 O03 S96 20 S96 O04 O3 O 0 1 N N N 18.606 32.765 -27.592 4.039 0.133 -0.512 O04 S96 21 S96 O06 O4 O 0 1 N N N 16.194 31.948 -27.051 6.450 -0.435 -0.998 O06 S96 22 S96 O07 O5 O 0 1 N N N 17.823 30.314 -27.883 5.624 1.830 -1.746 O07 S96 23 S96 O08 O6 O 0 1 N N N 18.043 31.180 -25.494 6.008 1.283 0.797 O08 S96 24 S96 O10 O7 O 0 1 N N N 18.831 33.318 -24.289 8.446 0.681 1.052 O10 S96 25 S96 O11 O8 O 0 1 N N N 18.003 31.412 -22.928 7.874 3.134 0.883 O11 S96 26 S96 O12 O9 O 0 1 N N N 16.434 32.760 -24.279 7.304 1.740 3.039 O12 S96 27 S96 O13 O10 O 0 1 N N N 17.442 35.000 -28.732 1.850 -1.322 -0.533 O13 S96 28 S96 O33 O11 O 0 1 N N N 16.178 35.619 -31.179 -1.034 -1.283 0.062 O33 S96 29 S96 O34 O12 O 0 1 N N N 15.563 32.913 -33.548 -3.131 -3.966 1.035 O34 S96 30 S96 O35 O13 O 0 1 N N N 13.877 34.283 -31.874 -0.822 -4.805 0.364 O35 S96 31 S96 P01 P1 P 0 1 N N N 18.321 34.436 -27.430 3.159 -0.905 -1.372 P01 S96 32 S96 P05 P2 P 0 1 N N N 17.631 31.539 -27.017 5.550 0.679 -0.623 P05 S96 33 S96 P09 P3 P 0 1 N N N 17.818 32.186 -24.229 7.430 1.688 1.434 P09 S96 34 S96 S25 S1 S 0 1 Y N N 23.884 33.131 -34.541 -6.720 3.370 -0.466 S25 S96 35 S96 H1 H1 H 0 1 N N N 16.129 33.429 -28.735 1.434 -3.265 -1.102 H1 S96 36 S96 H2 H2 H 0 1 N N N 17.303 33.478 -30.094 0.496 -2.004 -1.937 H2 S96 37 S96 H3 H3 H 0 1 N N N 14.835 35.288 -29.700 0.218 -2.644 1.040 H3 S96 38 S96 H4 H4 H 0 1 N N N 14.726 32.836 -30.708 -1.104 -3.787 -1.428 H4 S96 39 S96 H5 H5 H 0 1 N N N 16.841 32.837 -31.840 -3.197 -3.027 -0.820 H5 S96 40 S96 H6 H6 H 0 1 N N N 16.117 35.180 -33.383 -2.186 -1.770 1.738 H6 S96 41 S96 H8 H8 H 0 1 N N N 18.615 35.961 -30.983 -2.552 0.194 -1.472 H8 S96 42 S96 H9 H9 H 0 1 N N N 26.185 33.461 -34.209 -8.506 4.723 -1.661 H9 S96 43 S96 H10 H10 H 0 1 N N N 25.483 35.659 -32.796 -10.136 2.793 -1.412 H10 S96 44 S96 H11 H11 H 0 1 N N N 22.616 35.853 -32.810 -9.184 0.762 -0.220 H11 S96 45 S96 H12 H12 H 0 1 N N N 21.587 32.401 -36.081 -8.022 0.376 2.218 H12 S96 46 S96 H13 H13 H 0 1 N N N 19.092 31.911 -36.523 -6.678 -1.336 3.351 H13 S96 47 S96 H14 H14 H 0 1 N N N 18.050 35.277 -25.567 2.179 0.587 -2.640 H14 S96 48 S96 H15 H15 H 0 1 N N N 16.991 30.063 -28.266 5.058 2.593 -1.564 H15 S96 49 S96 H16 H16 H 0 1 N N N 18.712 31.798 -22.427 7.253 3.844 1.097 H16 S96 50 S96 H17 H17 H 0 1 N N N 16.485 33.707 -24.337 8.125 1.978 3.490 H17 S96 51 S96 H19 H19 H 0 1 N N N 16.273 32.770 -34.163 -3.265 -4.874 0.729 H19 S96 52 S96 H20 H20 H 0 1 N N N 13.485 33.629 -32.441 -1.387 -5.560 0.150 H20 S96 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S96 C14 C15 SING N N 1 S96 C14 O13 SING N N 2 S96 C15 C16 SING N N 3 S96 C15 O33 SING N N 4 S96 C16 C17 SING N N 5 S96 C16 O35 SING N N 6 S96 C17 C18 SING N N 7 S96 C17 O34 SING N N 8 S96 C18 N19 SING N N 9 S96 C20 N19 SING Y N 10 S96 C20 N21 DOUB Y N 11 S96 C22 C23 DOUB Y N 12 S96 C22 C32 SING Y N 13 S96 C22 N21 SING Y N 14 S96 C23 C24 SING N N 15 S96 C23 C29 SING Y N 16 S96 C24 C28 DOUB Y N 17 S96 C24 S25 SING Y N 18 S96 C26 C27 DOUB Y N 19 S96 C26 S25 SING Y N 20 S96 C27 C28 SING Y N 21 S96 C29 C30 DOUB Y N 22 S96 C30 N31 SING Y N 23 S96 C32 N19 SING Y N 24 S96 C32 N31 DOUB Y N 25 S96 O02 P01 DOUB N N 26 S96 O03 P01 SING N N 27 S96 O04 P01 SING N N 28 S96 O04 P05 SING N N 29 S96 O06 P05 DOUB N N 30 S96 O07 P05 SING N N 31 S96 O08 P05 SING N N 32 S96 O08 P09 SING N N 33 S96 O10 P09 DOUB N N 34 S96 O11 P09 SING N N 35 S96 O12 P09 SING N N 36 S96 O13 P01 SING N N 37 S96 C14 H1 SING N N 38 S96 C14 H2 SING N N 39 S96 C15 H3 SING N N 40 S96 C16 H4 SING N N 41 S96 C17 H5 SING N N 42 S96 C18 H6 SING N N 43 S96 C20 H8 SING N N 44 S96 C26 H9 SING N N 45 S96 C27 H10 SING N N 46 S96 C28 H11 SING N N 47 S96 C29 H12 SING N N 48 S96 C30 H13 SING N N 49 S96 O03 H14 SING N N 50 S96 O07 H15 SING N N 51 S96 O11 H16 SING N N 52 S96 O12 H17 SING N N 53 S96 O34 H19 SING N N 54 S96 O35 H20 SING N N 55 S96 C18 O33 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S96 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(C(O)C1O)n1cnc2c(ccnc21)c1cccs1" S96 InChI InChI 1.06 "InChI=1S/C15H18N3O13P3S/c19-12-9(6-28-33(24,25)31-34(26,27)30-32(21,22)23)29-15(13(12)20)18-7-17-11-8(3-4-16-14(11)18)10-2-1-5-35-10/h1-5,7,9,12-13,15,19-20H,6H2,(H,24,25)(H,26,27)(H2,21,22,23)/t9-,12-,13-,15-/m1/s1" S96 InChIKey InChI 1.06 SAOUNFXHOUBCDP-QGMIFYJMSA-N S96 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[C@H]([C@@H]1O)n2cnc3c(ccnc23)c4sccc4" S96 SMILES CACTVS 3.385 "O[CH]1[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]([CH]1O)n2cnc3c(ccnc23)c4sccc4" S96 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)c2ccnc3c2ncn3C4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" S96 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)c2ccnc3c2ncn3C4C(C(C(O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier S96 "SYSTEMATIC NAME" ACDLabs 12.01 "(7P)-3-{5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-7-(thiophen-2-yl)-3H-imidazo[4,5-b]pyridine" S96 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R})-3,4-bis(oxidanyl)-5-(7-thiophen-2-ylimidazo[4,5-b]pyridin-3-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S96 "Create component" 2022-06-27 RCSB S96 "Initial release" 2023-02-01 RCSB #