data_S9E # _chem_comp.id S9E _chem_comp.name "6-(2-bromanylimidazol-1-yl)pyridine-3-carbaldehyde" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H6 Br N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 252.067 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S9E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NM9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S9E C10 C1 C 0 1 Y N N N N N 18.811 21.415 3.000 3.075 0.276 -0.020 C10 S9E 1 S9E C13 C2 C 0 1 N N N N N N 19.808 21.403 4.247 4.427 0.851 -0.028 C13 S9E 2 S9E C02 C3 C 0 1 Y N N N N N 16.165 22.373 -1.234 -1.912 -0.472 0.002 C02 S9E 3 S9E C04 C4 C 0 1 Y N N N N N 14.424 21.092 -1.419 -2.489 -2.554 -0.031 C04 S9E 4 S9E C05 C5 C 0 1 Y N N N N N 15.072 20.765 -0.272 -1.144 -2.531 -0.042 C05 S9E 5 S9E C07 C6 C 0 1 Y N N N N N 17.065 21.500 0.922 0.535 -0.718 -0.024 C07 S9E 6 S9E C09 C7 C 0 1 Y N N N N N 17.678 22.217 3.020 1.951 1.102 -0.118 C09 S9E 7 S9E C11 C8 C 0 1 Y N N N N N 19.084 20.621 1.901 2.892 -1.113 0.079 C11 S9E 8 S9E C12 C9 C 0 1 Y N N N N N 18.179 20.671 0.842 1.603 -1.605 0.076 C12 S9E 9 S9E N03 N1 N 0 1 Y N N N N N 15.106 22.084 -2.004 -2.932 -1.287 -0.004 N03 S9E 10 S9E N06 N2 N 0 1 Y N N N N N 16.132 21.546 -0.163 -0.769 -1.209 -0.021 N06 S9E 11 S9E N08 N3 N 0 1 Y N N N N N 16.842 22.236 1.990 0.740 0.589 -0.111 N08 S9E 12 S9E BR1 BR1 BR 0 0 N N N N N N 17.498 23.756 -1.630 -2.008 1.416 0.030 BR1 S9E 13 S9E H1 H1 H 0 1 N N N N N N 20.818 21.048 4.105 4.559 1.920 -0.109 H1 S9E 14 S9E H4 H4 H 0 1 N N N N N N 13.520 20.634 -1.793 -3.107 -3.440 -0.042 H4 S9E 15 S9E H5 H5 H 0 1 N N N N N N 14.773 20.000 0.429 -0.485 -3.386 -0.062 H5 S9E 16 S9E H6 H6 H 0 1 N N N N N N 17.475 22.832 3.884 2.078 2.172 -0.199 H6 S9E 17 S9E H7 H7 H 0 1 N N N N N N 19.960 19.990 1.865 3.738 -1.779 0.156 H7 S9E 18 S9E H8 H8 H 0 1 N N N N N N 18.342 20.067 -0.039 1.424 -2.668 0.147 H8 S9E 19 S9E O1 O1 O 0 1 N Y N N N N 19.406 21.847 5.546 5.395 0.126 0.057 O1 S9E 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S9E N03 C04 SING Y N 1 S9E N03 C02 DOUB Y N 2 S9E BR1 C02 SING N N 3 S9E C04 C05 DOUB Y N 4 S9E C02 N06 SING Y N 5 S9E C05 N06 SING Y N 6 S9E N06 C07 SING N N 7 S9E C12 C07 DOUB Y N 8 S9E C12 C11 SING Y N 9 S9E C07 N08 SING Y N 10 S9E C11 C10 DOUB Y N 11 S9E N08 C09 DOUB Y N 12 S9E C10 C09 SING Y N 13 S9E C10 C13 SING N N 14 S9E C13 H1 SING N N 15 S9E C04 H4 SING N N 16 S9E C05 H5 SING N N 17 S9E C09 H6 SING N N 18 S9E C11 H7 SING N N 19 S9E C12 H8 SING N N 20 S9E C13 O1 DOUB N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S9E InChI InChI 1.03 "InChI=1S/C9H6BrN3O/c10-9-11-3-4-13(9)8-2-1-7(6-14)5-12-8/h1-6H" S9E InChIKey InChI 1.03 UTJFEWWYRZDGSU-UHFFFAOYSA-N S9E SMILES_CANONICAL CACTVS 3.385 "Brc1nccn1c2ccc(C=O)cn2" S9E SMILES CACTVS 3.385 "Brc1nccn1c2ccc(C=O)cn2" S9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ncc1C=O)n2ccnc2Br" S9E SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ncc1C=O)n2ccnc2Br" # _pdbx_chem_comp_identifier.comp_id S9E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-(2-bromanylimidazol-1-yl)pyridine-3-carbaldehyde" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S9E "Create component" 2020-11-12 PDBE S9E "Initial release" 2021-06-09 RCSB S9E "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id S9E _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C13 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #